|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
258-517 |
1.00e-38 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 141.68 E-value: 1.00e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 258 DADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVR 337
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 338 SHIGDTQGAIEDYNQAIKLNPDyittqkdrqisryllddqqksqpvinidfdDAIGYKNRGYDRFELGDYEGAIADYTQA 417
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPD------------------------------DAEALYNLGLALLELGRYDEAIEAYERA 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 418 IQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLEIADKQGAVADFHKAADLYWQEGKLAE 497
Cdd:COG0457 137 LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
250 260
....*....|....*....|
gi 653152028 498 YQDIKARIIELEIEASLDIL 517
Cdd:COG0457 217 AALAELLLLALALLLALRLA 236
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
286-517 |
2.23e-38 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 140.53 E-value: 2.23e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 286 INININHLQAYHQIGLTHYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDyittqk 365
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 366 drqisryllddqqksqpvinidfdDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAI 445
Cdd:COG0457 75 ------------------------DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAI 130
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 653152028 446 TDYTQVVKMNSHYINAYYNRGNALLEIADKQGAVADFHKAADLYWQEGKLAEYQDIKARIIELEIEASLDIL 517
Cdd:COG0457 131 EAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
221-509 |
3.30e-32 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 124.46 E-value: 3.30e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 221 PVDLTIFYLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIG 300
Cdd:COG2956 4 PVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 301 LTHYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPdyittqkdrqisryllddqqks 380
Cdd:COG2956 84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP---------------------- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 381 qpvinidfDDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYIN 460
Cdd:COG2956 142 --------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 653152028 461 AYYNRGNALLEIADKQGAVADFHKAADLYWQEGKLAEYQDIKARIIELE 509
Cdd:COG2956 214 ALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLE 262
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
223-492 |
5.39e-32 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 123.19 E-value: 5.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 223 DLTIFYLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLT 302
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 303 HYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPdyittqkdrqisryllddqqksqp 382
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP------------------------ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 383 vinidfDDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAY 462
Cdd:COG0457 142 ------DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
|
250 260 270
....*....|....*....|....*....|
gi 653152028 463 YNRGNALLEIADKQGAVADFHKAADLYWQE 492
Cdd:COG0457 216 LAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
230-488 |
5.12e-27 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 115.09 E-value: 5.12e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 230 DLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHL---------QAYHQIG 300
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAaaaallllaALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 301 LTHYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYittqkdrqisryllddqqks 380
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF-------------------- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 381 qpvinidfddAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYIN 460
Cdd:COG3914 146 ----------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
|
250 260
....*....|....*....|....*...
gi 653152028 461 AYYNRGNALLEIADKQGAVADFHKAADL 488
Cdd:COG3914 216 AHSNLLFALRQACDWEVYDRFEELLAAL 243
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
323-488 |
5.48e-27 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 108.46 E-value: 5.48e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 323 NPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYITTQKDRQISRYLLDDQQKSQPVINIDF---DDAIGYKNRGY 399
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALalpDLAQLYYERGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 400 DRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLEIADKQGAV 479
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161
|
....*....
gi 653152028 480 ADFHKAADL 488
Cdd:COG4785 162 ADLEKALEL 170
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
228-485 |
6.52e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 107.12 E-value: 6.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 228 YLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIG 307
Cdd:COG2956 45 HLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEG 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 308 NYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYIttqkdrqisRYLLddqqksqpvinid 387
Cdd:COG2956 125 DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA---------RALL------------- 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 388 fddaigykNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNsHYINAYYNRGN 467
Cdd:COG2956 183 --------LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD-PSDDLLLALAD 253
|
250
....*....|....*...
gi 653152028 468 ALLEIADKQGAVADFHKA 485
Cdd:COG2956 254 LLERKEGLEAALALLERQ 271
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
285-504 |
5.10e-25 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 103.07 E-value: 5.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 285 AINININHLQAYHQIGLTHYQIGNYQIAIEAYTQAIIiNPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYittq 364
Cdd:COG4785 32 AAVLALAIALADLALALAAAALAAAALAAERIDRALA-LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL---- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 365 kdrqisryllddqqksqpvinidfddAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAA 444
Cdd:COG4785 107 --------------------------AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 445 ITDYTQVVKMNSHYINAYYNRGNALLEIaDKQGAVADFHKAadlyWQEGKLAEYQDIKAR 504
Cdd:COG4785 161 IADLEKALELDPNDPERALWLYLAERKL-DPEKALALLLED----WATAYLLQGDTEEAR 215
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
228-455 |
8.91e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.18 E-value: 8.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 228 YLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIG 307
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 308 NYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYIttqkdrQISRYLLDDQQKsqpvinid 387
Cdd:COG2956 159 DYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL------PALPRLAELYEK-------- 224
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 653152028 388 fddaigyknrgydrfeLGDYEGAIADYTQAIQINPDDiDAYYCRGNAHFDLGKYAAAITDYTQVVKMN 455
Cdd:COG2956 225 ----------------LGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
227-361 |
2.14e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 97.76 E-value: 2.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 227 FYLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQI 306
Cdd:COG3914 80 LLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 653152028 307 GNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYI 361
Cdd:COG3914 160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNA 214
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
228-419 |
2.89e-20 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 89.59 E-value: 2.89e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 228 YLDLGDEYFQKGEYAAAINSYNQALlFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIG 307
Cdd:COG4785 43 DLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 308 NYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDyittQKDRQISRYLLDDQQKSQPVInid 387
Cdd:COG4785 122 DYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN----DPERALWLYLAERKLDPEKAL--- 194
|
170 180 190
....*....|....*....|....*....|..
gi 653152028 388 fddAIGYKNRGYDRFELGDYEGAIADYTQAIQ 419
Cdd:COG4785 195 ---ALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
228-360 |
9.13e-20 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 85.63 E-value: 9.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 228 YLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIG 307
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 653152028 308 NYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDY 360
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
229-429 |
1.43e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.98 E-value: 1.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 229 LDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGN 308
Cdd:COG3914 48 LAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGR 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 309 YQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYITTqkdrqisryllddqqksqpvinidf 388
Cdd:COG3914 128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA------------------------- 182
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 653152028 389 ddaigYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYY 429
Cdd:COG3914 183 -----LNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
333-489 |
1.51e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 84.86 E-value: 1.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 333 RADVRSHIGDTQGAIEDYNQAIKLNPDyittqkdrqisryllddqqksqpvinidfdDAIGYKNRGYDRFELGDYEGAIA 412
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPD------------------------------NPEAFALLGEILLQLGDLDEAIV 59
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 653152028 413 DYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLEIADKQGAVADFHKAADLY 489
Cdd:COG4783 60 LLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
223-355 |
8.99e-19 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 85.35 E-value: 8.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 223 DLTIFYLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLT 302
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 653152028 303 HYQIGNYQIAIEAYTQAIIINPHIAINYKNR--------------------ADVRSHIGDTQGAIEDYNQAIK 355
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPNDPERALWLylaerkldpekalallledwATAYLLQGDTEEARELFKLALA 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
223-362 |
1.58e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 82.73 E-value: 1.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 223 DLTIFYLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLT 302
Cdd:COG3914 110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 653152028 303 HYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGA--IEDYNQAIKLNPDYIT 362
Cdd:COG3914 190 LQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYdrFEELLAALARGPSELS 251
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
293-458 |
1.93e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 76.00 E-value: 1.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 293 LQAYHQIGLTHYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDyittqkdrqisry 372
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD------------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 373 llddqqksqpvinidfdDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVV 452
Cdd:COG4783 71 -----------------EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
....*.
gi 653152028 453 KMNSHY 458
Cdd:COG4783 134 ELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
278-428 |
4.29e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.66 E-value: 4.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 278 AITNYSQAINININHLQAYHQIGLTHYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLN 357
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 653152028 358 PDYITtqkdrqiSRYLLddqqksqpvinidfddaigyknrGYDRFELGDYEGAIADYTQAIQINPDDIDAY 428
Cdd:COG4235 82 PDNPE-------ALYLL-----------------------GLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
389-508 |
1.13e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 73.50 E-value: 1.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 389 DDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNA 468
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 653152028 469 LLEIADKQGAVADFHKAADLywqEGKLAEYQDIKARIIEL 508
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLAL---LPADAPARLLEASIAEA 131
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
397-509 |
2.61e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.92 E-value: 2.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 397 RGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLEIADKQ 476
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 653152028 477 GAVADFHKA--------------ADLYWQEGKLAEYQDIKARIIELE 509
Cdd:COG4783 90 EALALLEKAlkldpehpeaylrlARAYRALGRPDEAIAALEKALELD 136
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
227-324 |
3.36e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.53 E-value: 3.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 227 FYLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQI 306
Cdd:COG4783 40 AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
|
90
....*....|....*...
gi 653152028 307 GNYQIAIEAYTQAIIINP 324
Cdd:COG4783 120 GRPDEAIAALEKALELDP 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
228-324 |
8.75e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.19 E-value: 8.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 228 YLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIG 307
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90
....*....|....*..
gi 653152028 308 NYQIAIEAYTQAIIINP 324
Cdd:COG4235 100 DYAEAIAAWQKLLALLP 116
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
243-359 |
1.24e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.81 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 243 AAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNYQIAIEAYTQAIII 322
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 653152028 323 NPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPD 359
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
402-488 |
2.11e-14 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 68.66 E-value: 2.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 402 FELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAItDYTQVVKMNSHYINAYYNRGNALLEIADKQGAVAD 481
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
....*..
gi 653152028 482 FHKAADL 488
Cdd:COG3063 82 LERALEL 88
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
257-424 |
2.72e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.84 E-value: 2.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 257 SDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNYQIAIEAYTQAIIINPHIAINYKNRADV 336
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 337 RSHIGDTQGAIEDYNQAIKLNPdyittqkdrqisryllddqqksqpvinidfDDAIGYKNRGYDRFELGDYEGAIADYTQ 416
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDP------------------------------EHPEAYLRLARAYRALGRPDEAIAALEK 131
|
....*...
gi 653152028 417 AIQINPDD 424
Cdd:COG4783 132 ALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
373-488 |
3.84e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 69.99 E-value: 3.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 373 LLDDQQKSQPVINIDFDDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVV 452
Cdd:COG5010 36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115
|
90 100 110
....*....|....*....|....*....|....*.
gi 653152028 453 KMNSHYINAYYNRGNALLEIADKQGAVADFHKAADL 488
Cdd:COG5010 116 ALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
240-358 |
1.63e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 68.06 E-value: 1.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 240 EYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNYQIAIEAYTQA 319
Cdd:COG5010 35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114
|
90 100 110
....*....|....*....|....*....|....*....
gi 653152028 320 IIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNP 358
Cdd:COG5010 115 LALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
235-324 |
2.37e-13 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 65.96 E-value: 2.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 235 YFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAItNYSQAINININHLQAYHQIGLTHYQIGNYQIAIE 314
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 653152028 315 AYTQAIIINP 324
Cdd:COG3063 81 YLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
312-455 |
5.07e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.18 E-value: 5.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 312 AIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDyittqkdrqisryllddqqksqpvinidfdDA 391
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------------------------------NA 51
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 653152028 392 IGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMN 455
Cdd:COG4235 52 DALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
235-324 |
8.63e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.14 E-value: 8.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 235 YFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNYQIAIE 314
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 653152028 315 AYTQAIIINP 324
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
231-461 |
1.39e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.50 E-value: 1.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 231 LGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNYQ 310
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 311 IAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYITTQKDRQISRYLLDDQQKS----QPVINI 386
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAiatlSPALGL 358
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 653152028 387 DFDDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINA 461
Cdd:TIGR02917 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
270-359 |
2.87e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.88 E-value: 2.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 270 YQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNYQIAIeAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIED 349
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
90
....*....|
gi 653152028 350 YNQAIKLNPD 359
Cdd:COG3063 82 LERALELDPS 91
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
232-273 |
3.91e-11 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 57.87 E-value: 3.91e-11
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 653152028 232 GDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLG 273
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
410-488 |
6.67e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.02 E-value: 6.67e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 653152028 410 AIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLEIADKQGAVADFHKAADL 488
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
336-455 |
9.21e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.26 E-value: 9.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 336 VRSHIGDTQGAIEDYNQAIKLNPDYITTqkdrqisryllddqqksqpvinidfddaigYKNRGYDRFELGDYEGAIAdYT 415
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADA------------------------------LNNLGLLLLEQGRYDEAIA-LE 49
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 653152028 416 QAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMN 455
Cdd:COG3063 50 KALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
399-489 |
1.31e-10 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 58.46 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 399 YDRFELGDYEGAIADYTQAIQINPDDI---DAYYCRGNAHFDLGKYAAAITDYTQVVKM---NSHYINAYYNRGNALLEI 472
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLEL 80
|
90
....*....|....*..
gi 653152028 473 ADKQGAVADFHKAADLY 489
Cdd:COG1729 81 GDYDKARATLEELIKKY 97
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
398-439 |
2.96e-10 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 55.17 E-value: 2.96e-10
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 653152028 398 GYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLG 439
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
309-488 |
6.82e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 61.54 E-value: 6.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 309 YQIAIEAYTQAIIIN---PHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYITTQKDRQISRYLLDDQQKSQPvin 385
Cdd:TIGR00990 310 YEEAARAFEKALDLGklgEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE--- 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 386 iDFDDAIG--------YKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSH 457
Cdd:TIGR00990 387 -DFDKALKlnsedpdiYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465
|
170 180 190
....*....|....*....|....*....|.
gi 653152028 458 YINAYYNRGNALLEIADKQGAVADFHKAADL 488
Cdd:TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
233-320 |
7.16e-10 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 56.54 E-value: 7.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 233 DEYFQKGEYAAAINSYNQAL-LFNNSD--ADIYYKLGLVNYQLGEYHTAITNYSQAINININH---LQAYHQIGLTHYQI 306
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLkRYPNSPlaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80
|
90
....*....|....
gi 653152028 307 GNYQIAIEAYTQAI 320
Cdd:COG1729 81 GDYDKARATLEELI 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
293-455 |
8.20e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.66 E-value: 8.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 293 LQAYHQIGLTHYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDyittqkdrqisry 372
Cdd:COG5010 20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN------------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 373 llddqqksqpvinidfdDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVV 452
Cdd:COG5010 87 -----------------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
|
...
gi 653152028 453 KMN 455
Cdd:COG5010 150 GTS 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
240-422 |
8.61e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.66 E-value: 8.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 240 EYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNYQIAIEAYTQA 319
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 320 IIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPdyittqkdrqisryllddqqksqpvinidfDDAIGYKNRGY 399
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP------------------------------DNPNAYSNLAA 130
|
170 180
....*....|....*....|...
gi 653152028 400 DRFELGDYEGAIADYTQAIQINP 422
Cdd:COG5010 131 LLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
229-489 |
1.74e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.48 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 229 LDLGDEYFQKGEYAAAINSYNQALLFNNsdADIYYKLGLVNYQL--GEYHTAITNYSQAINININHLQAYHQIGLTHYQI 306
Cdd:TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNP--QEIEPALALAQYYLgkGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 307 GNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYITTQKdRQISRYLLDDQQKSQPVINI 386
Cdd:TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI-GLAQLLLAAKRTESAKKIAK 693
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 387 DFD-----DAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCrGNAHFDLGKYAAAITDYTQVVKMNSHYINA 461
Cdd:TIGR02917 694 SLQkqhpkAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHPNDAVL 772
|
250 260
....*....|....*....|....*...
gi 653152028 462 YYNRGNALLEIADKQGAVADFHKAADLY 489
Cdd:TIGR02917 773 RTALAELYLAQKDYDKAIKHYQTVVKKA 800
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
190-356 |
2.23e-09 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 60.00 E-value: 2.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 190 GLFSYLEQFPISANSypsNLSQSQIIKPQstpvdLTIFYLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVN 269
Cdd:TIGR00990 338 GTFKCLKGKHLEALA---DLSKSIELDPR-----VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 270 YQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIED 349
Cdd:TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489
|
....*..
gi 653152028 350 YNQAIKL 356
Cdd:TIGR00990 490 FDTAIEL 496
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
228-480 |
2.46e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.10 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 228 YLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIG 307
Cdd:TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 308 NYQIAIEAYT-QAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYITTQkdRQISRYLLDDQQKSQPV--- 383
Cdd:TIGR02917 105 KFQQVLDELPgKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAK--LGLAQLALAENRFDEARali 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 384 -----INIDFDDAIGYKnrGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVK-MNSH 457
Cdd:TIGR02917 183 devltADPGNVDALLLK--GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKkAPNS 260
|
250 260
....*....|....*....|...
gi 653152028 458 YINAYYnrgNALLEIADKQGAVA 480
Cdd:TIGR02917 261 PLAHYL---KALVDFQKKNYEDA 280
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
406-496 |
3.39e-09 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 58.64 E-value: 3.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 406 DYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLEIADKQGAVADFHKA 485
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96
|
90
....*....|.
gi 653152028 486 ADLYWQEGKLA 496
Cdd:PLN03088 97 ASLAPGDSRFT 107
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
218-463 |
4.79e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.94 E-value: 4.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 218 QSTPVDLTIFYLdLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAItNYSQAINININHLQA-- 295
Cdd:TIGR02917 50 QKDPNDAEARFL-LGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVL-DELPGKTLLDDEGAAel 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 296 YHQIGLTHYQIGNYQIAIEAYTQAIIINP----------HIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYITTQK 365
Cdd:TIGR02917 128 LALRGLAYLGLGQLELAQKSYEQALAIDPrslyaklglaQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 366 DRQISrylLDDQQKsqpVINIDFDDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAI 445
Cdd:TIGR02917 208 NIELA---LAAYRK---AIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281
|
250
....*....|....*...
gi 653152028 446 TDYTQVVKMNSHYINAYY 463
Cdd:TIGR02917 282 ETLQDALKSAPEYLPALL 299
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
219-488 |
8.33e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.17 E-value: 8.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 219 STPVDLTIFYLdLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQ 298
Cdd:TIGR02917 358 LDPDDPAALSL-LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 299 IGLTHYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDYITTqkdrqiSRYLLD-DQ 377
Cdd:TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA------AANLARiDI 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 378 QKSQPVINID-FDDAIGY--KN----RGYDRFEL--GDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDY 448
Cdd:TIGR02917 511 QEGNPDDAIQrFEKVLTIdpKNlraiLALAGLYLrtGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 653152028 449 TQVVKMNSHYINAYYNRGNALLEIADKQGAVADFHKAADL 488
Cdd:TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
230-488 |
2.24e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 56.53 E-value: 2.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 230 DLGDEYFQKGEYAAAINSYNQALLFNnSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNY 309
Cdd:TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECK-PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 310 QIAIEAYTQAIIIN--------PHIAINYKNRADVRS-HIGDTQGA-------IEDYNQAIKLNPDYITTQKDRQISRYL 373
Cdd:TIGR00990 211 ADALLDLTASCIIDgfrneqsaQAVERLLKKFAESKAkEILETKPEnlpsvtfVGNYLQSFRPKPRPAGLEDSNELDEET 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 374 LDDQQ---KSQPVINID---------FDD-----------AIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYC 430
Cdd:TIGR00990 291 GNGQLqlgLKSPESKADesyeeaaraFEKaldlgklgekeAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIK 370
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 653152028 431 RGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLEIADKQGAVADFHKAADL 488
Cdd:TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
303-423 |
3.17e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.32 E-value: 3.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 303 HYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEdYNQAIKLNPDyittqkdrqisryllddqqksqp 382
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN----------------------- 57
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 653152028 383 vinidfdDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPD 423
Cdd:COG3063 58 -------NAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
394-489 |
7.00e-08 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 50.74 E-value: 7.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 394 YKNRGYDRFELGDYEGAIADYTQAIQINPDDI---DAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYI---NAYYNRGN 467
Cdd:TIGR02795 3 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTyapNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkapDALLKLGM 82
|
90 100
....*....|....*....|..
gi 653152028 468 ALLEIADKQGAVADFHKAADLY 489
Cdd:TIGR02795 83 SLQELGDKEKAKATLQQVIKRY 104
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
258-481 |
9.40e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.09 E-value: 9.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 258 DADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGNYQIAIEAYTQAIIINPhiainykNRADV- 336
Cdd:TIGR02917 21 SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-------PKNQVl 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 337 ----RSHIGdtQGAiedYNQAIKLNPDYiTTQKDRQISRYL---------LDDQQKSQPVIN--IDFDDAIGYKNRGYDR 401
Cdd:TIGR02917 94 pllaRAYLL--QGK---FQQVLDELPGK-TLLDDEGAAELLalrglaylgLGQLELAQKSYEqaLAIDPRSLYAKLGLAQ 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 402 FEL--GDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLEIADKQGAV 479
Cdd:TIGR02917 168 LALaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAE 247
|
..
gi 653152028 480 AD 481
Cdd:TIGR02917 248 KH 249
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
341-453 |
2.50e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.22 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 341 GDTQGAIEDYNQAIKLNPDyittqkdrqiSRYLlddqqksqpvinidfDDAIGYknRGYDRFELGDYEGAIADYTQAIQI 420
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPN----------SPLA---------------PDALYW--LGEAYYALGDYDEAAEAFEKLLKR 59
|
90 100 110
....*....|....*....|....*....|....*.
gi 653152028 421 NPDDI---DAYYCRGNAHFDLGKYAAAITDYTQVVK 453
Cdd:COG1729 60 YPDSPkapDALLKLGLSYLELGDYDKARATLEELIK 95
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
259-320 |
3.43e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.77 E-value: 3.43e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 259 ADIYYKLGLVNYQLGEYHTAITNYSQAININI--------NHLQAYHQIGLTHYQIGNYQIAIEAYTQAI 320
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
239-332 |
5.09e-07 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 49.67 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 239 GEYAAAINSYNQALLFNNSDAD---IYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGN------- 308
Cdd:PRK02603 49 GEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEkaeeagd 128
|
90 100 110
....*....|....*....|....*....|.
gi 653152028 309 -------YQIAIEAYTQAIIINPHIAINYKN 332
Cdd:PRK02603 129 qdeaealFDKAAEYWKQAIRLAPNNYIEAQN 159
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
386-509 |
6.70e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 6.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 386 IDFDDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNR 465
Cdd:COG5010 15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 653152028 466 GNALLEIADKQGAVADFHKA--------------ADLYWQEGKLAEYQDIKARIIELE 509
Cdd:COG5010 95 ALLYSRSGDKDEAKEYYEKAlalspdnpnaysnlAALLLSLGQDDEAKAALQRALGTS 152
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
262-364 |
9.50e-07 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 48.85 E-value: 9.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 262 YYKLGLVNYQLGEYHTAITNYSQAINININ-HLQAY--HQIGLTHYQIGNYQIAIEAYTQAIIINP-------HIAINYK 331
Cdd:CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDpYDRSYilYNIGLIHTSNGEHTKALEYYFQALERNPflpqalnNMAVICH 117
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 653152028 332 NRADVRSHIGDTQ-------GAIEDYNQAIKLNPD-YITTQ 364
Cdd:CHL00033 118 YRGEQAIEQGDSEiaeawfdQAAEYWKQAIALAPGnYIEAQ 158
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
227-289 |
3.56e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 3.56e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 653152028 227 FYLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAININ 289
Cdd:COG5010 90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
424-489 |
7.32e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.57 E-value: 7.32e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 653152028 424 DIDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLEIADKQGAVADFHKAADLY 489
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD 68
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
432-471 |
7.33e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.84 E-value: 7.33e-06
10 20 30 40
....*....|....*....|....*....|....*....|
gi 653152028 432 GNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLE 471
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
391-424 |
1.43e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 42.02 E-value: 1.43e-05
10 20 30
....*....|....*....|....*....|....
gi 653152028 391 AIGYKNRGYDRFELGDYEGAIADYTQAIQINPDD 424
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
308-358 |
1.54e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 47.09 E-value: 1.54e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 653152028 308 NYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNP 358
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
228-294 |
1.70e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.62 E-value: 1.70e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 653152028 228 YLDLGDEYFQKGEYAAAInSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQ 294
Cdd:COG3063 29 LNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
217-287 |
2.91e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.44 E-value: 2.91e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 653152028 217 PQSTPVDLTIFYLdlGDEYFQKGEYAAAINSYNQAL-LFNNSD--ADIYYKLGLVNYQLGEYHTAITNYSQAIN 287
Cdd:COG1729 24 PNSPLAPDALYWL--GEAYYALGDYDEAAEAFEKLLkRYPDSPkaPDALLKLGLSYLELGDYDKARATLEELIK 95
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
258-364 |
5.82e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 43.89 E-value: 5.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 258 DADIYYKLGLVNYQLGEYHTAITNYSQAININ---INHLQAYHQIGLTHYQIGNYQIAIEAYTQAIIINP-------HIA 327
Cdd:PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEedpNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPkqpsalnNIA 113
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 653152028 328 INYKNRADVRSHIGDTQG-------AIEDYNQAIKLNPD-YITTQ 364
Cdd:PRK02603 114 VIYHKRGEKAEEAGDQDEaealfdkAAEYWKQAIRLAPNnYIEAQ 158
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
391-482 |
6.03e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 45.75 E-value: 6.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 391 AIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIdaYYC-RGNAHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNAL 469
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV--YYSnRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204
|
90
....*....|...
gi 653152028 470 LEIADKQGAVADF 482
Cdd:TIGR00990 205 DGLGKYADALLDL 217
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
434-512 |
6.03e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 6.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 434 AHFDLGKYAAAITDYTQVVKMNSHYINAYYNRGNALLEIADKQGAVAdFHKA--------------ADLYWQEGKLAEYQ 499
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKAlkldpnnaeallnlAELLLELGDYDEAL 79
|
90
....*....|...
gi 653152028 500 DIKARIIELEIEA 512
Cdd:COG3063 80 AYLERALELDPSA 92
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
396-454 |
7.20e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 40.78 E-value: 7.20e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 653152028 396 NRGYDRFELGDYEGAIADYTQAIQIN---PDDIDAYYCRGNAHFDLGKYAAAITDYTQVVKM 454
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
293-359 |
8.02e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.22 E-value: 8.02e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 653152028 293 LQAYHQIGLTHYQIGNYQIAIEAYTQAIII--------NPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPD 359
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
228-453 |
8.35e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.46 E-value: 8.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 228 YLDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAyhQIGLTHYQIG 307
Cdd:TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA--QIGLAQLLLA 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 308 NYQI--AIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPdyiTTQKDRQISRYLLDDQQKSQpvin 385
Cdd:TIGR02917 682 AKRTesAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP---SSQNAIKLHRALLASGNTAE---- 754
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 653152028 386 idfddaigyknrgydrfelgdyegAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAITDYTQVVK 453
Cdd:TIGR02917 755 ------------------------AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVK 798
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
270-356 |
9.12e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.90 E-value: 9.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 270 YQLGEYHTAITNYSQAINININHL---QAYHQIGLTHYQIGNYQIAIEAYTQAIIINPhiaiNYKNRADVRSHIGDTQGA 346
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYP----DSPKAPDALLKLGLSYLE 79
|
90
....*....|
gi 653152028 347 IEDYNQAIKL 356
Cdd:COG1729 80 LGDYDKARAT 89
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
425-458 |
1.02e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.33 E-value: 1.02e-04
10 20 30
....*....|....*....|....*....|....
gi 653152028 425 IDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHY 458
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
238-319 |
1.38e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 42.69 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 238 KGEYAAAINSYNQALLFNNSDAD---IYYKLGLVNYQLGEYHTAITNYSQAINININHLQA-------YHQIGLTHYQIG 307
Cdd:CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAlnnmaviCHYRGEQAIEQG 127
|
90
....*....|..
gi 653152028 308 NYQIAIEAYTQA 319
Cdd:CHL00033 128 DSEIAEAWFDQA 139
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
425-458 |
1.54e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.97 E-value: 1.54e-04
10 20 30
....*....|....*....|....*....|....
gi 653152028 425 IDAYYCRGNAHFDLGKYAAAITDYTQVVKMNSHY 458
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
266-307 |
2.07e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.99 E-value: 2.07e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 653152028 266 GLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIG 307
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
431-492 |
2.14e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.63 E-value: 2.14e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 653152028 431 RGNAHFDLGKYAAAITDYTQVVKMNS---HYINAYYNRGNALLEIADKQGAVADFHKAADLYWQE 492
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALARFPespDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
294-325 |
2.49e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.56 E-value: 2.49e-04
10 20 30
....*....|....*....|....*....|..
gi 653152028 294 QAYHQIGLTHYQIGNYQIAIEAYTQAIIINPH 325
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
391-424 |
2.91e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 2.91e-04
10 20 30
....*....|....*....|....*....|....
gi 653152028 391 AIGYKNRGYDRFELGDYEGAIADYTQAIQINPDD 424
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
227-356 |
3.71e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 43.31 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 227 FYLDLGDEYFQKGEYAAAINSYNQAL------LFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIG 300
Cdd:COG3899 707 LLLRAARRALARGAYAEALRYLERALellppdPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHG 786
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 653152028 301 LTH-----------YQIGNYQIAIEAYTQAIII------NPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKL 356
Cdd:COG3899 787 NPPasarayanlglLLLGDYEEAYEFGELALALaerlgdRRLEARALFNLGFILHWLGPLREALELLREALEA 859
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
229-286 |
5.90e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 5.90e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 653152028 229 LDLGDEYFQKGEYAAAINSYNQALLFNNS---DADIYYKLGLVNYQLGEYHTAITNYSQAI 286
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAAL 61
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
391-423 |
5.90e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.12 E-value: 5.90e-04
10 20 30
....*....|....*....|....*....|...
gi 653152028 391 AIGYKNRGYDRFELGDYEGAIADYTQAIQINPD 423
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
405-504 |
6.86e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 40.38 E-value: 6.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 405 GDYEGAIADYTQAIQINPDDIDAYYCRGN---AHFDLGKYAAAITDYTQVVKMNSHYINA-------YYNRGNALLEIAD 474
Cdd:CHL00033 49 GEYAEALQNYYEAMRLEIDPYDRSYILYNiglIHTSNGEHTKALEYYFQALERNPFLPQAlnnmaviCHYRGEQAIEQGD 128
|
90 100 110
....*....|....*....|....*....|.
gi 653152028 475 KQGAVADFHKAADlYWQEG-KLAEYQDIKAR 504
Cdd:CHL00033 129 SEIAEAWFDQAAE-YWKQAiALAPGNYIEAQ 158
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
294-325 |
7.64e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 7.64e-04
10 20 30
....*....|....*....|....*....|..
gi 653152028 294 QAYHQIGLTHYQIGNYQIAIEAYTQAIIINPH 325
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
405-446 |
8.01e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 8.01e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 653152028 405 GDYEGAIADYTQAIQINPDDIDAYYCRGNAHFDLGKYAAAIT 446
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEA 43
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
386-427 |
1.04e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 37.58 E-value: 1.04e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 653152028 386 IDFDDAIGYKNRGYDRFELGDYEGAIADYTQAIQINPDDIDA 427
Cdd:pfam13371 24 LAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
330-360 |
1.42e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 1.42e-03
10 20 30
....*....|....*....|....*....|.
gi 653152028 330 YKNRADVRSHIGDTQGAIEDYNQAIKLNPDY 360
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
414-445 |
1.51e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 36.37 E-value: 1.51e-03
10 20 30
....*....|....*....|....*....|..
gi 653152028 414 YTQAIQINPDDIDAYYCRGNAHFDLGKYAAAI 445
Cdd:pfam13431 2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
295-325 |
1.62e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.96 E-value: 1.62e-03
10 20 30
....*....|....*....|....*....|.
gi 653152028 295 AYHQIGLTHYQIGNYQIAIEAYTQAIIINPH 325
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
259-292 |
1.66e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 1.66e-03
10 20 30
....*....|....*....|....*....|....
gi 653152028 259 ADIYYKLGLVNYQLGEYHTAITNYSQAINININH 292
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| ANAPC3 |
pfam12895 |
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ... |
237-316 |
1.70e-03 |
|
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.
Pssm-ID: 463743 [Multi-domain] Cd Length: 82 Bit Score: 37.62 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 237 QKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAItNYSQAINININHLQAYHQIGLTHYQIGNYQIAIEAY 316
Cdd:pfam12895 1 DQHQYKNAIFLAERLLAAEPESPEDAYLLAQCLFLNGQYKRAY-ELLRKAKLNGSSLGCRYLFAQCLLKLKKYDEALDAL 79
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
229-287 |
1.76e-03 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 40.23 E-value: 1.76e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 229 LDLGDEYFQKGEYAAAINSYNQALLF--NNSDAD-IYYKLGLVNYQL--------GEYHTAITNYSQAIN 287
Cdd:TIGR03302 74 LDLAYAYYKSGDYAEAIAAADRFIRLhpNHPDADyAYYLRGLSNYNQidrvdrdqTAAREAFEAFQELIR 143
|
|
| TPR_9 |
pfam13371 |
Tetratricopeptide repeat; |
303-359 |
1.84e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463860 [Multi-domain] Cd Length: 73 Bit Score: 37.20 E-value: 1.84e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 653152028 303 HYQIGNYQIAIEAYTQAIIINPHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPD 359
Cdd:pfam13371 5 YLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPD 61
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
298-360 |
2.04e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 2.04e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 653152028 298 QIGLTHYQIGNYQIAIEAYTQAIIIN---PHIAINYKNRADVRSHIGDTQGAIEDYNQAIKLNPDY 360
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
426-455 |
3.02e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 3.02e-03
10 20 30
....*....|....*....|....*....|
gi 653152028 426 DAYYCRGNAHFDLGKYAAAITDYTQVVKMN 455
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELD 31
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
232-476 |
3.10e-03 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 39.48 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 232 GDEYFQKGEYAAAINSYNQAL-LFNNSD--ADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQ---AYHQIGLTHYQ 305
Cdd:COG4105 39 AKEALEKGDYEKAIKLFEELEpRYPGSPyaEQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSPNadyAYYLRGLSYYE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 306 ignyQIAIEAYTQaiiinphiainyknradvrshiGDTQGAIEDYNQAIKLNPDyittqkdrqiSRYLLDDQQKsqpvin 385
Cdd:COG4105 119 ----QSPDSDRDQ----------------------TSTRKAIEAFQELINRYPD----------SEYAEDAKKR------ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 386 IDF-DDAIGYKN----RGYdrFELGDYEGAIADYTQAIQINPDDI---DAYYCRGNAHFDLGKYAAAItDYTQVVKMNsh 457
Cdd:COG4105 157 IDElRDKLARKElevaRYY--LKRGAYVAAINRFQNVLEDYPDTPaveEALYLLVEAYYALGRYDEAQ-DAAAVLGKN-- 231
|
250 260
....*....|....*....|
gi 653152028 458 YINA-YYNRGNALLEIADKQ 476
Cdd:COG4105 232 YPDSpYLKDAEKLLKKIGKE 251
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
229-312 |
3.68e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 39.77 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653152028 229 LDLGDEYFQKGEYAAAINSYNQALLFNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINININHLQAYHQIGLTHYQIGN 308
Cdd:PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85
|
....
gi 653152028 309 YQIA 312
Cdd:PLN03088 86 YQTA 89
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
228-279 |
3.78e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.09 E-value: 3.78e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 653152028 228 YLDLGDEYFQKGEYAAAINSYNQAL--LFNNsDADIYYKLGLVNYQLGEYHTAI 279
Cdd:COG4700 92 RVRLADALLELGRYDEAIELYEEALtgIFAD-DPHILLGLAQALFELGRYAEAL 144
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
259-289 |
5.57e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.70 E-value: 5.57e-03
10 20 30
....*....|....*....|....*....|.
gi 653152028 259 ADIYYKLGLVNYQLGEYHTAITNYSQAININ 289
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
228-288 |
6.38e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.83 E-value: 6.38e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 653152028 228 YLDLGDEYFQKGEYAAAINSYNQALL--------FNNSDADIYYKLGLVNYQLGEYHTAITNYSQAINI 288
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| |
