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Conserved domains on  [gi|649912639|gb|AIC66312|]
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cytochrome b, partial (mitochondrion) [Xipholena punicea]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 2-354 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 702.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00119  28 ISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGS 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00119 108 YLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLP 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00119 188 FLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPP 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00119 268 HIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 347

                        330       340       350
                 ....*....|....*....|....*....|...
gi 649912639 322 FIIIGQLASITYFTTILILLPTIGALENKILKL 354
Cdd:MTH00119 348 FIIIGQLASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 2-354 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 702.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00119  28 ISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGS 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00119 108 YLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLP 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00119 188 FLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPP 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00119 268 HIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 347

                        330       340       350
                 ....*....|....*....|....*....|...
gi 649912639 322 FIIIGQLASITYFTTILILLPTIGALENKILKL 354
Cdd:MTH00119 348 FIIIGQLASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-348 8.08e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 364.11  E-value: 8.08e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   5 WWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYly 84
Cdd:COG1290   39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY-- 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  85 KE----TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FL 159
Cdd:COG1290  117 KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLL 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 160 LPFIIAGLTFIHLTFLHETGSNNPLGI----PSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNllGDPENFTPAN 235
Cdd:COG1290  197 LPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPAN 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 236 PLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWI 313
Cdd:COG1290  275 PLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTIL 354

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 649912639 314 GSQPVehPFIIIGQLASITYFTTILILLPTIGALE 348
Cdd:COG1290  355 GANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-181 5.36e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 265.77  E-value: 5.36e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:cd00284   19 ISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGS 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 Y--LYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFL 159
Cdd:cd00284   99 YkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFL 178

                        170       180
                 ....*....|....*....|..
gi 649912639 160 LPFIIAGLTFIHLTFLHETGSN 181
Cdd:cd00284  179 LPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-179 1.97e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 233.43  E-value: 1.97e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639    2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG- 80
Cdd:pfam00033  10 LSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGg 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   81 -SYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFL 159
Cdd:pfam00033  90 fSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFL 169

                         170       180
                  ....*....|....*....|
gi 649912639  160 LPFIIAGLTFIHLTFLHETG 179
Cdd:pfam00033 170 LPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 233-305 2.70e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.27  E-value: 2.70e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 649912639  233 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFL-HMSKQRTMTFRPLSQ--LLFWTLVA 305
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATtvFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 2-354 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 702.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00119  28 ISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGS 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00119 108 YLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLP 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00119 188 FLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPP 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00119 268 HIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 347

                        330       340       350
                 ....*....|....*....|....*....|...
gi 649912639 322 FIIIGQLASITYFTTILILLPTIGALENKILKL 354
Cdd:MTH00119 348 FIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 2-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 646.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00131  27 ISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGS 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00131 107 YLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFP 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00131 187 FVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00131 267 HIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHP 346

                        330       340       350
                 ....*....|....*....|....*....|..
gi 649912639 322 FIIIGQLASITYFTTILILLPTIGALENKILK 353
Cdd:MTH00131 347 FIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 2-353 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 640.53  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00100  27 ISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGS 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00100 107 YLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILP 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00100 187 FIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00100 267 HIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHP 346

                        330       340       350
                 ....*....|....*....|....*....|..
gi 649912639 322 FIIIGQLASITYFTTILILLPTIGALENKILK 353
Cdd:MTH00100 347 FIIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00074
cytochrome b; Provisional
 2-354 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 615.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00074  28 LSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGS 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00074 108 YMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLP 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00074 188 FLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPP 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00074 268 HIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDP 347

                        330       340       350
                 ....*....|....*....|....*....|...
gi 649912639 322 FIIIGQLASITYFTTILILLPTIGALENKILKL 354
Cdd:MTH00074 348 FIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 2-342 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 593.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00191  24 ISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGS 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00191 104 YLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLP 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00191 184 FLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPV 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00191 264 HIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDP 343

                        330       340
                 ....*....|....*....|.
gi 649912639 322 FIIIGQLASITYFTTILILLP 342
Cdd:MTH00191 344 FILLGQISSFLYFFLFLLLFP 364
CYTB MTH00156
cytochrome b; Provisional
 2-340 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 585.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00156  17 ISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGS 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00156  97 YKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLP 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00156 177 FIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPV 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00156 257 HIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEP 336

                        330
                 ....*....|....*....
gi 649912639 322 FIIIGQLASITYFTTILIL 340
Cdd:MTH00156 337 YILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 2-352 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 565.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00145  28 LSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGS 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00145 108 YLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLP 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00145 188 FVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPV 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00145 268 HIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEP 347

                        330       340       350
                 ....*....|....*....|....*....|.
gi 649912639 322 FIIIGQLASITYFtTILILLPTIGALENKIL 352
Cdd:MTH00145 348 YETIGQVFTVLYF-LFFLILPLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 2-352 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 558.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00034  27 LSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGS 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00034 107 YVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFP 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00034 187 FIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00034 267 HIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYP 346

                        330       340       350
                 ....*....|....*....|....*....|.
gi 649912639 322 FIIIGQLASITYFTTILILLPTIGALENKIL 352
Cdd:MTH00034 347 FILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
 2-353 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 525.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00016  28 LSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGS 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00016 108 YFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLP 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00016 188 FVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPT 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00016 268 HIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPP 347

                        330       340       350
                 ....*....|....*....|....*....|..
gi 649912639 322 FIIIGQLASITYFtTILILLPTIGALENKILK 353
Cdd:MTH00016 348 YEFLGQIFTVFYF-FYFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 2-354 1.82e-175

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 492.30  E-value: 1.82e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00053  28 ISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGS 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00053 108 YTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLP 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00053 188 FILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPV 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00053 268 HIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEP 347

                        330       340       350
                 ....*....|....*....|....*....|...
gi 649912639 322 FIIIGQLASITYFTTILILLPTIGALENKILKL 354
Cdd:MTH00053 348 YILIGQIASIFYFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 2-353 1.59e-172

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 484.59  E-value: 1.59e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00022  26 ISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGG 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00022 106 YLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFP 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00022 186 FILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPV 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00022 266 HIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEP 345

                        330       340       350
                 ....*....|....*....|....*....|..
gi 649912639 322 FIIIGQLASITYFTTILILLPTIGALENKILK 353
Cdd:MTH00022 346 FILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 2-353 5.93e-160

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 452.84  E-value: 5.93e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00224  28 ISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGS 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00224 108 FNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLP 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00224 188 FAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPI 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00224 268 HIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDP 347

                        330       340       350
                 ....*....|....*....|....*....|..
gi 649912639 322 FIIIGQLASITYFtTILILLPTIGALENKILK 353
Cdd:MTH00224 348 FEGIGQVFTILYF-SYFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 2-349 7.49e-131

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 379.28  E-value: 7.49e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00033  24 ISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGG 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00033 104 YSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLP 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFS--PNLLGDPENFTPANPLVT 239
Cdd:MTH00033 184 FVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVT 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 240 PPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPV- 318
Cdd:MTH00033 264 PVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAg 343

                        330       340       350
                 ....*....|....*....|....*....|.
gi 649912639 319 EHPFIIIGQLASITYFTTILILLPTIGALEN 349
Cdd:MTH00033 344 ADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-348 8.08e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 364.11  E-value: 8.08e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   5 WWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYly 84
Cdd:COG1290   39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY-- 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  85 KE----TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FL 159
Cdd:COG1290  117 KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLL 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 160 LPFIIAGLTFIHLTFLHETGSNNPLGI----PSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNllGDPENFTPAN 235
Cdd:COG1290  197 LPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPAN 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 236 PLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTWI 313
Cdd:COG1290  275 PLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTIL 354

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 649912639 314 GSQPVehPFIIIGQLASITYFTTILILLPTIGALE 348
Cdd:COG1290  355 GANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 2-341 6.62e-116

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 339.99  E-value: 6.62e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00086  16 LSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMS 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00086  96 YRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLP 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDiLGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPP 241
Cdd:MTH00086 176 WGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPV 254

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 242 HIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLhmsKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEHP 321
Cdd:MTH00086 255 HIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYP 331

                        330       340
                 ....*....|....*....|
gi 649912639 322 FIIIGQLASITYFTTILILL 341
Cdd:MTH00086 332 FLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-181 5.36e-89

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 265.77  E-value: 5.36e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:cd00284   19 ISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGS 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 Y--LYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFL 159
Cdd:cd00284   99 YkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFL 178

                        170       180
                 ....*....|....*....|..
gi 649912639 160 LPFIIAGLTFIHLTFLHETGSN 181
Cdd:cd00284  179 LPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 2-331 5.52e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 266.08  E-value: 5.52e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGS 81
Cdd:MTH00046  18 LNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  82 YLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 161
Cdd:MTH00046  98 YSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 162 FIIAGLTFIHLTFLHETGSNNPLGIPSD-CDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTP 240
Cdd:MTH00046 178 FVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTP 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 241 PHIKPEWYFLFAYAILRSIPNKLGGvLALAFSVLVLLLIPflhmSKQRTMTFRPLSQLLFWTLVANLLILTWIGSQPVEH 320
Cdd:MTH00046 258 VSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEY 332

                        330
                 ....*....|.
gi 649912639 321 PFIIIGQLASI 331
Cdd:MTH00046 333 PYLLISQLFSV 343
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-179 1.97e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 233.43  E-value: 1.97e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639    2 ISAWWNFGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG- 80
Cdd:pfam00033  10 LSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGg 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   81 -SYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFL 159
Cdd:pfam00033  90 fSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFL 169

                         170       180
                  ....*....|....*....|
gi 649912639  160 LPFIIAGLTFIHLTFLHETG 179
Cdd:pfam00033 170 LPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 182-329 8.35e-53

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 171.29  E-value: 8.35e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 182 NPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 261
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 649912639 262 KLGGVLALAFSVLVLLLIPFLHMSKQRTmTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLA 329
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
233-333 7.76e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 156.87  E-value: 7.76e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  233 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFLHMSKQRTMTFRPLSQLLFWTLVANLLILTW 312
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 649912639  313 IGSQPVEHPFIIIGQLASITY 333
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
63-228 2.49e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 139.68  E-value: 2.49e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   63 SFFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 140
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  141 GGFSVDNPTLTRFFALHF-LLPFIIAGLTFIHLTFLHETGSNNPLGIPSDCDKIPFHPYFSMKDILGLMFLLFFLMLLAM 219
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 649912639  220 FSPNLLGDP 228
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 8-184 2.54e-34

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 125.98  E-value: 2.54e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   8 FGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE- 86
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  87 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFII 164
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 649912639 165 AGLTFIHLTFLHETGSNNPL 184
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 8-184 4.59e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 117.13  E-value: 4.59e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639   8 FGSLLGICLMTQIITGLLLAMHYTADTSLAFTSVTHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE- 86
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639  87 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFII 164
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195

                        170       180
                 ....*....|....*....|
gi 649912639 165 AGLTFIHLTFLHETGSNNPL 184
Cdd:CHL00070 196 AVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 233-305 7.46e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 62.71  E-value: 7.46e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 649912639 233 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFL-HMSKQRTMTFRPLSQL--LFWTLVA 305
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTvfLIGTAVA 140
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 233-314 7.18e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.19  E-value: 7.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 649912639 233 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFL-HMSKQRTMTFRPLSQLLFwtLVANLLILt 311
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPVATAVF--LFGTLVTL- 142


                 ...
gi 649912639 312 WIG 314
Cdd:COG5679  143 WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 233-305 2.70e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 58.27  E-value: 2.70e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 649912639  233 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAFSVLVLLLIPFL-HMSKQRTMTFRPLSQ--LLFWTLVA 305
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATtvFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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