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Conserved domains on  [gi|648263820|ref|WP_026044969|]
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MULTISPECIES: YqjD family protein [Burkholderiaceae]

Protein Classification

YqjD family protein( domain architecture ID 10008628)

YqjD family protein is a DUF883 domain-containing protein; similar to Escherichia coli YqjD, a membrane-anchored ribosome-binding protein that inhibits growth in stationary phase

Gene Ontology:  GO:0043022|GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 1-100 1.01e-35

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


:

Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 117.35  E-value: 1.01e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648263820   1 MSEINKEKLMSDIKTVLADAEDLLKQAASSTGDRAAELREKAMSRLKQAKDKAADVQVVVVEKGKKAARATDDYVHEHPW 80
Cdd:COG4575    9 SVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDYVHENPW 88

                         90       100
                 ....*....|....*....|
gi 648263820  81 TSIGVAAGVGVLIGLLINRK 100
Cdd:COG4575   89 QSVGIAAGVGLLLGLLLARR 108
 
Name Accession Description Interval E-value
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 1-100 1.01e-35

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 117.35  E-value: 1.01e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648263820   1 MSEINKEKLMSDIKTVLADAEDLLKQAASSTGDRAAELREKAMSRLKQAKDKAADVQVVVVEKGKKAARATDDYVHEHPW 80
Cdd:COG4575    9 SVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDYVHENPW 88

                         90       100
                 ....*....|....*....|
gi 648263820  81 TSIGVAAGVGVLIGLLINRK 100
Cdd:COG4575   89 QSVGIAAGVGLLLGLLLARR 108
DUF883_C pfam19029
DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed ...
 71-100 7.40e-14

DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed transmembrane helix found in DUF883 proteins. The helix contains a glycine zipper motif suggestive of dimerization.


Pssm-ID: 465949  Cd Length: 30  Bit Score: 59.87  E-value: 7.40e-14
                          10        20        30
                  ....*....|....*....|....*....|
gi 648263820   71 TDDYVHEHPWTSIGVAAGVGVLIGLLINRK 100
Cdd:pfam19029   1 TDDYVHENPWQTIGIAAGVGLLLGLLLARR 30
PRK10404 PRK10404
stress response protein ElaB;
1-100 6.45e-12

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 56.78  E-value: 6.45e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648263820   1 MSEINKEKLMSDIKTVLADA-EDLLKQAASSTGDRAAELREKAMSRLKQAKDKAADVQVVVVEKGKKAARATDDYVHEHP 79
Cdd:PRK10404   1 MSNQFGDTRIDDDLTLLSETlEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80

                         90       100
                 ....*....|....*....|.
gi 648263820  80 WTSIGVAAGVGVLIGLLINRK 100
Cdd:PRK10404  81 WQGIGVGAAVGLVLGLLLARR 101
 
Name Accession Description Interval E-value
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 1-100 1.01e-35

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 117.35  E-value: 1.01e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648263820   1 MSEINKEKLMSDIKTVLADAEDLLKQAASSTGDRAAELREKAMSRLKQAKDKAADVQVVVVEKGKKAARATDDYVHEHPW 80
Cdd:COG4575    9 SVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAADDYVHENPW 88

                         90       100
                 ....*....|....*....|
gi 648263820  81 TSIGVAAGVGVLIGLLINRK 100
Cdd:COG4575   89 QSVGIAAGVGLLLGLLLARR 108
DUF883_C pfam19029
DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed ...
 71-100 7.40e-14

DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed transmembrane helix found in DUF883 proteins. The helix contains a glycine zipper motif suggestive of dimerization.


Pssm-ID: 465949  Cd Length: 30  Bit Score: 59.87  E-value: 7.40e-14
                          10        20        30
                  ....*....|....*....|....*....|
gi 648263820   71 TDDYVHEHPWTSIGVAAGVGVLIGLLINRK 100
Cdd:pfam19029   1 TDDYVHENPWQTIGIAAGVGLLLGLLLARR 30
PRK10404 PRK10404
stress response protein ElaB;
1-100 6.45e-12

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 56.78  E-value: 6.45e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648263820   1 MSEINKEKLMSDIKTVLADA-EDLLKQAASSTGDRAAELREKAMSRLKQAKDKAADVQVVVVEKGKKAARATDDYVHEHP 79
Cdd:PRK10404   1 MSNQFGDTRIDDDLTLLSETlEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80

                         90       100
                 ....*....|....*....|.
gi 648263820  80 WTSIGVAAGVGVLIGLLINRK 100
Cdd:PRK10404  81 WQGIGVGAAVGLVLGLLLARR 101
DUF883 pfam05957
DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of ...
 7-57 2.67e-10

DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of unknown function. The N-terminal domain found in this entry is related to pfam05532.


Pssm-ID: 461786  Cd Length: 53  Bit Score: 50.97  E-value: 2.67e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 648263820    7 EKLMSDIKTVLADAEDLLKQAASSTGDRAAELREKAMSRLKQAKDKAADVQ 57
Cdd:pfam05957   1 EELIDDLKSLLADLEELLKDAADEAGEEADALRERLESRLKRARERLSDAQ 51
PRK10132 PRK10132
hypothetical protein; Provisional
 17-98 2.52e-08

hypothetical protein; Provisional


Pssm-ID: 182259  Cd Length: 108  Bit Score: 47.55  E-value: 2.52e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 648263820  17 LADA-EDLLKQAASSTGDRAAELREKAMSRLKQAKDKAADvQVVVVEKGKKAARATDDYVHEHPWTSIGVAAGVGVLIGL 95
Cdd:PRK10132  24 LADSlESVLKSWGSDAKGEAEAARRKAQALLKETRARMHG-RTRVQQAARDAVGCADTFVRERPWCSVGTAAAVGIFIGA 102


                 ...
gi 648263820  96 LIN 98
Cdd:PRK10132 103 LLS 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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