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Conserved domains on  [gi|645306657|ref|XP_008246239|]
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PREDICTED: subtilisin-like protease SBT5.3, partial [Prunus mume]

Protein Classification

S8/S53 family peptidase( domain architecture ID 1039)

S8/S53 family peptidase such as S8 peptidases (subtilisin and kexin) and S53 peptidases (sedolisin)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidases_S8_S53 super family cl10459
Peptidase domain in the S8 and S53 families; Members of the peptidases S8 (subtilisin and ...
17-91 1.53e-34

Peptidase domain in the S8 and S53 families; Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


The actual alignment was detected with superfamily member cd04852:

Pssm-ID: 415849 [Multi-domain]  Cd Length: 307  Bit Score: 121.17  E-value: 1.53e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 645306657  17 LKPDITAPGVSIIAAYTEAQGPTNqmfDKRRVLFNSVSGTSMSCPHISGICGLLKTLYPHWSPAAIKSAIMTTAT 91
Cdd:cd04852  236 LKPDIAAPGVDILAAWTPEGADPG---DARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307
 
Name Accession Description Interval E-value
Peptidases_S8_3 cd04852
Peptidase S8 family domain, uncharacterized subfamily 3; This family is a member of the ...
17-91 1.53e-34

Peptidase S8 family domain, uncharacterized subfamily 3; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173795 [Multi-domain]  Cd Length: 307  Bit Score: 121.17  E-value: 1.53e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 645306657  17 LKPDITAPGVSIIAAYTEAQGPTNqmfDKRRVLFNSVSGTSMSCPHISGICGLLKTLYPHWSPAAIKSAIMTTAT 91
Cdd:cd04852  236 LKPDIAAPGVDILAAWTPEGADPG---DARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307
Peptidase_S8 pfam00082
Subtilase family; Subtilases are a family of serine proteases. They appear to have ...
1-91 2.08e-18

Subtilase family; Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.


Pssm-ID: 395035 [Multi-domain]  Cd Length: 287  Bit Score: 78.27  E-value: 2.08e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657    1 MAAFSSKGPNIITPdiLKPDITAPGVSIIAAYTEAQGPTNQmFDKRRVLFNSVSGTSMSCPHISGICGLLKTLYPHWSPA 80
Cdd:pfam00082 186 LASFSSYGPTLDGR--LKPDIVAPGGNITGGNISSTLLTTT-SDPPNQGYDSMSGTSMATPHVAGAAALLKQAYPNLTPE 262
                          90
                  ....*....|.
gi 645306657   81 AIKSAIMTTAT 91
Cdd:pfam00082 263 TLKALLVNTAT 273
AprE COG1404
Serine protease, subtilisin family [Posttranslational modification, protein turnover, ...
2-91 9.41e-17

Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441014 [Multi-domain]  Cd Length: 456  Bit Score: 74.75  E-value: 9.41e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   2 AAFSSKGPniitpdilKPDITAPGVSIIAAYteaqgPTNQmfdkrrvlFNSVSGTSMSCPHISGICGLLKTLYPHWSPAA 81
Cdd:COG1404  274 ASFSNYGP--------KVDVAAPGVDILSTY-----PGGG--------YATLSGTSMAAPHVAGAAALLLSANPDLTPAQ 332
                         90
                 ....*....|
gi 645306657  82 IKSAIMTTAT 91
Cdd:COG1404  333 VRAILLNTAT 342
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
5-69 2.28e-09

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 54.01  E-value: 2.28e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 645306657    5 SSKGPNIItpDILKPDITAPGVSIIAAYteaqgPTNQmfdkrrvlFNSVSGTSMSCPHISGICGL 69
Cdd:NF040809  994 SSRGPTIR--NIQKPDIVAPGVNIIAPY-----PGNT--------YATITGTSAAAAHVSGVAAL 1043
T7SS_mycosin TIGR03921
type VII secretion-associated serine protease mycosin; Members of this family are ...
2-123 1.35e-06

type VII secretion-associated serine protease mycosin; Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]


Pssm-ID: 274856 [Multi-domain]  Cd Length: 350  Bit Score: 45.78  E-value: 1.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657    2 AAFSSKGPniitpdilKPDITAPGVSIIAAYTEAQGPTNQmfdkrrvlfnsvSGTSMSCPHISGICGLLKTLYPHWSPAA 81
Cdd:TIGR03921 191 SSFSLPGP--------WVDLAAPGENIVSLSPGGDGLATT------------SGTSFAAPFVSGTAALVRSRFPDLTAAQ 250
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 645306657   82 IKSAImtTATTQDNSREPVLNasfyratpfSYGAGHVNPNSA 123
Cdd:TIGR03921 251 VRRRI--EATADHPARGGRDD---------YVGYGVVDPVAA 281
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
2-70 1.96e-04

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 39.76  E-value: 1.96e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 645306657    2 AAFSSKGPniITPDILKPDITAPGVSIIAaYTEAqGPTNqmfdkrrvlfnSVSGTSMSCPHISGICGLL 70
Cdd:NF040809  419 SVFSGEGD--IENGIYKPDLLAPGENIVS-YLPG-GTTG-----------ALTGTSMATPHVTGVCSLL 472
 
Name Accession Description Interval E-value
Peptidases_S8_3 cd04852
Peptidase S8 family domain, uncharacterized subfamily 3; This family is a member of the ...
17-91 1.53e-34

Peptidase S8 family domain, uncharacterized subfamily 3; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173795 [Multi-domain]  Cd Length: 307  Bit Score: 121.17  E-value: 1.53e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 645306657  17 LKPDITAPGVSIIAAYTEAQGPTNqmfDKRRVLFNSVSGTSMSCPHISGICGLLKTLYPHWSPAAIKSAIMTTAT 91
Cdd:cd04852  236 LKPDIAAPGVDILAAWTPEGADPG---DARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307
Peptidases_S8_subtilisin_Vpr-like cd07474
Peptidase S8 family domain in Vpr-like proteins; The maturation of the peptide antibiotic ...
2-123 3.84e-24

Peptidase S8 family domain in Vpr-like proteins; The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173800 [Multi-domain]  Cd Length: 295  Bit Score: 93.55  E-value: 3.84e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   2 AAFSSKGPnIITPDILKPDITAPGVSIIAAyteAQGPTNQmfdkrrvlFNSVSGTSMSCPHISGICGLLKTLYPHWSPAA 81
Cdd:cd07474  193 GPSSSRGP-PTSDSAIKPDIVAPGVDIMST---APGSGTG--------YARMSGTSMAAPHVAGAAALLKQAHPDWSPAQ 260
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 645306657  82 IKSAIMTTATTQDNSREPVlnasfyrATPFSYGAGHVNPNSA 123
Cdd:cd07474  261 IKAALMNTAKPLYDSDGVV-------YPVSRQGAGRVDALRA 295
Peptidases_S8_1 cd07487
Peptidase S8 family domain, uncharacterized subfamily 1; This family is a member of the ...
1-91 9.64e-19

Peptidase S8 family domain, uncharacterized subfamily 1; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173812 [Multi-domain]  Cd Length: 264  Bit Score: 78.78  E-value: 9.64e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   1 MAAFSSKGPniiTPD-ILKPDITAPGVSIIAAYTEAQGPtNQMFDKRRVlfnSVSGTSMSCPHISGICGLLKTLYPHWSP 79
Cdd:cd07487  180 ISYFSSRGP---TGDgRIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYF---EMSGTSMATPHVSGAIALLLQANPILTP 252
                         90
                 ....*....|..
gi 645306657  80 AAIKSAIMTTAT 91
Cdd:cd07487  253 DEVKCILRDTAT 264
Peptidase_S8 pfam00082
Subtilase family; Subtilases are a family of serine proteases. They appear to have ...
1-91 2.08e-18

Subtilase family; Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.


Pssm-ID: 395035 [Multi-domain]  Cd Length: 287  Bit Score: 78.27  E-value: 2.08e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657    1 MAAFSSKGPNIITPdiLKPDITAPGVSIIAAYTEAQGPTNQmFDKRRVLFNSVSGTSMSCPHISGICGLLKTLYPHWSPA 80
Cdd:pfam00082 186 LASFSSYGPTLDGR--LKPDIVAPGGNITGGNISSTLLTTT-SDPPNQGYDSMSGTSMATPHVAGAAALLKQAYPNLTPE 262
                          90
                  ....*....|.
gi 645306657   81 AIKSAIMTTAT 91
Cdd:pfam00082 263 TLKALLVNTAT 273
AprE COG1404
Serine protease, subtilisin family [Posttranslational modification, protein turnover, ...
2-91 9.41e-17

Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441014 [Multi-domain]  Cd Length: 456  Bit Score: 74.75  E-value: 9.41e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   2 AAFSSKGPniitpdilKPDITAPGVSIIAAYteaqgPTNQmfdkrrvlFNSVSGTSMSCPHISGICGLLKTLYPHWSPAA 81
Cdd:COG1404  274 ASFSNYGP--------KVDVAAPGVDILSTY-----PGGG--------YATLSGTSMAAPHVAGAAALLLSANPDLTPAQ 332
                         90
                 ....*....|
gi 645306657  82 IKSAIMTTAT 91
Cdd:COG1404  333 VRAILLNTAT 342
Peptidases_S8_CspA-like cd07478
Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts ...
1-91 3.25e-15

Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173804 [Multi-domain]  Cd Length: 455  Bit Score: 70.34  E-value: 3.25e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   1 MAAFSSKGPNIitPDILKPDITAPGVSIIAAYteaqgPTNQmfdkrrvlFNSVSGTSMSCPHISGICGLL------KTLY 74
Cdd:cd07478  359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTAS-----PGGG--------YTTRSGTSVAAAIVAGACALLlqwgivRGND 423
                         90
                 ....*....|....*..
gi 645306657  75 PHWSPAAIKSAIMTTAT 91
Cdd:cd07478  424 PYLYGEKIKTYLIRGAR 440
Peptidases_S8_6 cd07490
Peptidase S8 family domain, uncharacterized subfamily 6; This family is a member of the ...
3-90 6.42e-15

Peptidase S8 family domain, uncharacterized subfamily 6; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173815 [Multi-domain]  Cd Length: 254  Bit Score: 68.34  E-value: 6.42e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   3 AFSSKGPNIITPDILKPDITAPGVSIIAAYTEAQGPTNqmfdkrrvlFNSVSGTSMSCPHISGICGLLKTLYPHWSPAAI 82
Cdd:cd07490  175 ASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGDGQ---------YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQI 245

                 ....*...
gi 645306657  83 KSAIMTTA 90
Cdd:cd07490  246 KDALTETA 253
Peptidases_S8_C5a_Peptidase cd07475
Peptidase S8 family domain in Streptococcal C5a peptidases; Streptococcal C5a peptidase (SCP), ...
1-119 1.64e-14

Peptidase S8 family domain in Streptococcal C5a peptidases; Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173801 [Multi-domain]  Cd Length: 346  Bit Score: 68.06  E-value: 1.64e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   1 MAAFSSKGPniiTPDI-LKPDITAPGVSIIAAYteaqgPTNQmfdkrrvlFNSVSGTSMSCPHISGICGL----LKTLYP 75
Cdd:cd07475  234 MSGFSSWGP---TPDLdLKPDITAPGGNIYSTV-----NDNT--------YGYMSGTSMASPHVAGASALvkqrLKEKYP 297
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 645306657  76 HWSPA----AIKSAIMTTATTQDNSREPvlnasfyrATPFS---YGAGHVN 119
Cdd:cd07475  298 KLSGEelvdLVKNLLMNTATPPLDSEDT--------KTYYSprrQGAGLID 340
Peptidases_S8_Kp43_protease cd04842
Peptidase S8 family domain in Kp43 proteases; Kp43 proteases are members of the peptidase S8 ...
1-90 3.87e-14

Peptidase S8 family domain in Kp43 proteases; Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases


Pssm-ID: 173791 [Multi-domain]  Cd Length: 293  Bit Score: 66.58  E-value: 3.87e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   1 MAAFSSKGPniiTPD-ILKPDITAPGVSIIAAYTEAQGPTNQMFDKrrvlFNSVSGTSMSCPHISGICGLL--------- 70
Cdd:cd04842  201 VASFSSRGP---TYDgRIKPDLVAPGTGILSARSGGGGIGDTSDSA----YTSKSGTSMATPLVAGAAALLrqyfvdgyy 273
                         90       100
                 ....*....|....*....|.
gi 645306657  71 -KTLYPhwSPAAIKSAIMTTA 90
Cdd:cd04842  274 pTKFNP--SAALLKALLINSA 292
Peptidases_S8_5 cd07489
Peptidase S8 family domain, uncharacterized subfamily 5; gap in seq This family is a member of ...
4-119 3.13e-13

Peptidase S8 family domain, uncharacterized subfamily 5; gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173814 [Multi-domain]  Cd Length: 312  Bit Score: 64.55  E-value: 3.13e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   4 FSSKGPniiTPD-ILKPDITAPGVSIIAAYTEAQGPtnqmfdkrrvlFNSVSGTSMSCPHISGICGLLKTLYPH-WSPAA 81
Cdd:cd07489  191 FSSWGP---TNElYLKPDVAAPGGNILSTYPLAGGG-----------YAVLSGTSMATPYVAGAAALLIQARHGkLSPAE 256
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 645306657  82 IKSAIMTTATTQDNSREPvlNASFYRATPFSYGAGHVN 119
Cdd:cd07489  257 LRDLLASTAKPLPWSDGT--SALPDLAPVAQQGAGLVN 292
Peptidases_S8_Subtilisin_like cd07473
Peptidase S8 family domain in Subtilisin-like proteins; This family is a member of the ...
1-91 6.17e-13

Peptidase S8 family domain in Subtilisin-like proteins; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173799 [Multi-domain]  Cd Length: 259  Bit Score: 62.98  E-value: 6.17e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   1 MAAFSSKGPNIItpdilkpDITAPGVSIIAAYteaqgPTNQmfdkrrvlFNSVSGTSMSCPHISGICGLLKTLYPHWSPA 80
Cdd:cd07473  189 LASFSNYGKKTV-------DLAAPGVDILSTS-----PGGG--------YGYMSGTSMATPHVAGAAALLLSLNPNLTAA 248
                         90
                 ....*....|.
gi 645306657  81 AIKSAIMTTAT 91
Cdd:cd07473  249 QIKDAILSSAD 259
Peptidases_S8_PCSK9_ProteinaseK_like cd04077
Peptidase S8 family domain in ProteinaseK-like proteins; The peptidase S8 or Subtilase clan of ...
1-91 1.11e-12

Peptidase S8 family domain in ProteinaseK-like proteins; The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K.


Pssm-ID: 173790 [Multi-domain]  Cd Length: 255  Bit Score: 62.53  E-value: 1.11e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   1 MAAFSSKGPNIitpdilkpDITAPGVSIIAAYteAQGPTNqmfdkrrvlFNSVSGTSMSCPHISGICGLLKTLYPHWSPA 80
Cdd:cd04077  183 RASFSNYGSCV--------DIFAPGVDILSAW--IGSDTA---------TATLSGTSMAAPHVAGLAAYLLSLGPDLSPA 243
                         90
                 ....*....|.
gi 645306657  81 AIKSAIMTTAT 91
Cdd:cd04077  244 EVKARLLNLAT 254
Peptidases_S8_S53 cd00306
Peptidase domain in the S8 and S53 families; Members of the peptidases S8 (subtilisin and ...
18-89 2.65e-12

Peptidase domain in the S8 and S53 families; Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173787 [Multi-domain]  Cd Length: 241  Bit Score: 61.45  E-value: 2.65e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 645306657  18 KPDITAPGVSIIAAYTEAQGPTNQMfdkrrvlfnsvSGTSMSCPHISGICGLLKTLYPHWSPAAIKSAIMTT 89
Cdd:cd00306  181 GVDIAAPGGDILSSPTTGGGGYATL-----------SGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241
Peptidases_S8_Subtilisin_subset cd07477
Peptidase S8 family domain in Subtilisin proteins; This group is composed of many different ...
2-89 3.31e-11

Peptidase S8 family domain in Subtilisin proteins; This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173803 [Multi-domain]  Cd Length: 229  Bit Score: 57.93  E-value: 3.31e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   2 AAFSSKGPNIitpdilkpDITAPGVSIIAAYteaqgPTNQmfdkrrvlFNSVSGTSMSCPHISGICGLLKTLYPHWSPAA 81
Cdd:cd07477  163 ASFSSTGPEV--------ELAAPGVDILSTY-----PNND--------YAYLSGTSMATPHVAGVAALVWSKRPELTNAQ 221

                 ....*...
gi 645306657  82 IKSAIMTT 89
Cdd:cd07477  222 VRQALNKT 229
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
5-69 2.28e-09

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 54.01  E-value: 2.28e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 645306657    5 SSKGPNIItpDILKPDITAPGVSIIAAYteaqgPTNQmfdkrrvlFNSVSGTSMSCPHISGICGL 69
Cdd:NF040809  994 SSRGPTIR--NIQKPDIVAPGVNIIAPY-----PGNT--------YATITGTSAAAAHVSGVAAL 1043
Peptidases_S8_BacillopeptidaseF-like cd07481
Peptidase S8 family domain in BacillopeptidaseF-like proteins; Bacillus subtilis produces and ...
1-75 3.59e-09

Peptidase S8 family domain in BacillopeptidaseF-like proteins; Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.


Pssm-ID: 173807 [Multi-domain]  Cd Length: 264  Bit Score: 52.76  E-value: 3.59e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 645306657   1 MAAFSSKGPniITPDILKPDITAPGVSIIAAYTEaqgptnqmfdkrrVLFNSVSGTSMSCPHISGICGLLKTLYP 75
Cdd:cd07481  187 LADFSSRGP--STYGRIKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANP 246
Peptidases_S8_9 cd07493
Peptidase S8 family domain, uncharacterized subfamily 9; This family is a member of the ...
1-90 1.11e-08

Peptidase S8 family domain, uncharacterized subfamily 9; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173818 [Multi-domain]  Cd Length: 261  Bit Score: 51.54  E-value: 1.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   1 MAAFSSKGPniiTPD-ILKPDITAPGVSIIAayteaqgptnqmfDKRRVLFNSVSGTSMSCPHISGICGLLKTLYPHWSP 79
Cdd:cd07493  186 KASFSSIGP---TADgRLKPDVMALGTGIYV-------------INGDGNITYANGTSFSCPLIAGLIACLWQAHPNWTN 249
                         90
                 ....*....|.
gi 645306657  80 AAIKSAIMTTA 90
Cdd:cd07493  250 LQIKEAILKSA 260
Peptidases_S8_Thermitase_like cd07484
Peptidase S8 family domain in Thermitase-like proteins; Thermitase is a non-specific, ...
2-92 1.32e-08

Peptidase S8 family domain in Thermitase-like proteins; Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173810 [Multi-domain]  Cd Length: 260  Bit Score: 51.11  E-value: 1.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   2 AAFSSKGPNIitpdilkpDITAPGVSIIAAYteaqgPTNQmfdkrrvlFNSVSGTSMSCPHISGICGLLKTLYPhWSPAA 81
Cdd:cd07484  190 ASFSNYGKWV--------DVSAPGGGILSTT-----PDGD--------YAYMSGTSMATPHVAGVAALLYSQGP-LSASE 247
                         90
                 ....*....|.
gi 645306657  82 IKSAIMTTATT 92
Cdd:cd07484  248 VRDALKKTADD 258
Peptidases_S53_like cd05562
Peptidase domain in the S53 family; Members of the peptidase S53 (sedolisin) family include ...
13-123 1.17e-07

Peptidase domain in the S53 family; Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase.


Pssm-ID: 173798 [Multi-domain]  Cd Length: 275  Bit Score: 48.44  E-value: 1.17e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657  13 TPDIL-KPDITAP-GVSIIAAyTEAQGPTNqmfdkrrvlFnsvSGTSMSCPHISGICGLLKTLYPHWSPAAIKSAIMTTA 90
Cdd:cd05562  184 TPEVRqKPDVTAPdGVNGTVD-GDGDGPPN---------F---FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTA 250
                         90       100       110
                 ....*....|....*....|....*....|...
gi 645306657  91 TTQDNSrepvlnasfyrATPFSYGAGHVNPNSA 123
Cdd:cd05562  251 LDMGEP-----------GYDNASGSGLVDADRA 272
Peptidases_S8_Subtilisin_Novo-like cd07483
Peptidase S8 family domain in Subtilisin_Novo-like proteins; Subtilisins are a group of ...
1-91 8.86e-07

Peptidase S8 family domain in Subtilisin_Novo-like proteins; Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173809 [Multi-domain]  Cd Length: 291  Bit Score: 46.20  E-value: 8.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   1 MAAFSSKGPNIItpdilkpDITAPGVSIIAAYteaqgPTNQmfdkrrvlFNSVSGTSMSCPHISGICGLLKTLYPHWSPA 80
Cdd:cd07483  221 VANFSNYGKKNV-------DVFAPGERIYSTT-----PDNE--------YETDSGTSMAAPVVSGVAALIWSYYPNLTAK 280
                         90
                 ....*....|.
gi 645306657  81 AIKSAIMTTAT 91
Cdd:cd07483  281 EVKQIILESGV 291
T7SS_mycosin TIGR03921
type VII secretion-associated serine protease mycosin; Members of this family are ...
2-123 1.35e-06

type VII secretion-associated serine protease mycosin; Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]


Pssm-ID: 274856 [Multi-domain]  Cd Length: 350  Bit Score: 45.78  E-value: 1.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657    2 AAFSSKGPniitpdilKPDITAPGVSIIAAYTEAQGPTNQmfdkrrvlfnsvSGTSMSCPHISGICGLLKTLYPHWSPAA 81
Cdd:TIGR03921 191 SSFSLPGP--------WVDLAAPGENIVSLSPGGDGLATT------------SGTSFAAPFVSGTAALVRSRFPDLTAAQ 250
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 645306657   82 IKSAImtTATTQDNSREPVLNasfyratpfSYGAGHVNPNSA 123
Cdd:TIGR03921 251 VRRRI--EATADHPARGGRDD---------YVGYGVVDPVAA 281
Peptidases_S8_Fervidolysin_like cd07485
Peptidase S8 family domain in Fervidolysin; Fervidolysin found in Fervidobacterium pennivorans ...
20-89 4.94e-06

Peptidase S8 family domain in Fervidolysin; Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173811 [Multi-domain]  Cd Length: 273  Bit Score: 44.01  E-value: 4.94e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 645306657  20 DITAPGV-SIIAAYTEAQGPTNQMFDKrrvlfnsVSGTSMSCPHISGICGLLKTLYP-HWSPAAIKSAIMTT 89
Cdd:cd07485  209 DIAAPGVgTILSTVPKLDGDGGGNYEY-------LSGTSMAAPHVSGVAALVLSKFPdVFTPEQIRKLLEES 273
Peptidases_S8_12 cd07480
Peptidase S8 family domain, uncharacterized subfamily 12; This family is a member of the ...
5-69 7.33e-06

Peptidase S8 family domain, uncharacterized subfamily 12; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173806 [Multi-domain]  Cd Length: 297  Bit Score: 43.52  E-value: 7.33e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 645306657   5 SSKGPNIITPDILKPDITAPGVSIIAAyteaqgptnqmfdKRRVLFNSVSGTSMSCPHISGICGL 69
Cdd:cd07480  199 TGNFSAVANFSNGEVDIAAPGVDIVSA-------------APGGGYRSMSGTSMATPHVAGVAAL 250
Peptidases_S8_15 cd07498
Peptidase S8 family domain, uncharacterized subfamily 15; This family is a member of the ...
2-89 1.36e-05

Peptidase S8 family domain, uncharacterized subfamily 15; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173822 [Multi-domain]  Cd Length: 242  Bit Score: 42.71  E-value: 1.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   2 AAFSSKGPNIitpdilkpDITAPGVSIiaaYTEAQGPTNQmFDKRRVLFNSVSGTSMSCPHISGICGLLKTLYPHWSPAA 81
Cdd:cd07498  167 ASYSNYGNYV--------DLVAPGVGI---WTTGTGRGSA-GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAE 234

                 ....*...
gi 645306657  82 IKSAIMTT 89
Cdd:cd07498  235 VEDILTST 242
Peptidases_S8_13 cd07496
Peptidase S8 family domain, uncharacterized subfamily 13; This family is a member of the ...
2-89 1.13e-04

Peptidase S8 family domain, uncharacterized subfamily 13; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173820 [Multi-domain]  Cd Length: 285  Bit Score: 39.97  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   2 AAFSSKGPNIitpdilkpDITAPGVSIiaAYTEAQGPTNQMFDKRRVL----FNSVSGTSMSCPHISGICGLLKTLYPHW 77
Cdd:cd07496  204 ASYSNYGPAV--------DVSAPGGDC--ASDVNGDGYPDSNTGTTSPggstYGFLQGTSMAAPHVAGVAALMKSVNPSL 273
                         90
                 ....*....|..
gi 645306657  78 SPAAIKSAIMTT 89
Cdd:cd07496  274 TPAQIESLLQST 285
Peptidases_S8_10 cd07494
Peptidase S8 family domain, uncharacterized subfamily 10; This family is a member of the ...
54-90 1.35e-04

Peptidase S8 family domain, uncharacterized subfamily 10; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173819 [Multi-domain]  Cd Length: 298  Bit Score: 39.77  E-value: 1.35e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 645306657  54 SGTSMSCPHISGICGLLKTLYPHWSPAAIKSAIMTTA 90
Cdd:cd07494  246 SGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTA 282
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
2-70 1.96e-04

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 39.76  E-value: 1.96e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 645306657    2 AAFSSKGPniITPDILKPDITAPGVSIIAaYTEAqGPTNqmfdkrrvlfnSVSGTSMSCPHISGICGLL 70
Cdd:NF040809  419 SVFSGEGD--IENGIYKPDLLAPGENIVS-YLPG-GTTG-----------ALTGTSMATPHVTGVCSLL 472
Peptidases_S8_Tripeptidyl_Aminopeptidase_II cd04857
Peptidase S8 family domain in Tripeptidyl aminopeptidases_II; Tripeptidyl aminopeptidases II ...
5-91 3.76e-04

Peptidase S8 family domain in Tripeptidyl aminopeptidases_II; Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.


Pssm-ID: 173796 [Multi-domain]  Cd Length: 412  Bit Score: 38.80  E-value: 3.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 645306657   5 SSKGPniiTPD-ILKPDITAPGVSIIAAYTEAQGPTNQMfdkrrvlfnsvSGTSMSCPHISGICGL----LKTLYPHWSP 79
Cdd:cd04857  333 SSRGP---TADgALGVSISAPGGAIASVPNWTLQGSQLM-----------NGTSMSSPNACGGIALllsgLKAEGIPYTP 398
                         90
                 ....*....|..
gi 645306657  80 AAIKSAIMTTAT 91
Cdd:cd04857  399 YSVRRALENTAK 410
Peptidases_S8_Autotransporter_serine_protease_like cd04848
Peptidase S8 family domain in Autotransporter serine proteases; Autotransporter serine ...
21-91 4.81e-04

Peptidase S8 family domain in Autotransporter serine proteases; Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.


Pssm-ID: 173794 [Multi-domain]  Cd Length: 267  Bit Score: 38.07  E-value: 4.81e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 645306657  21 ITAPGVSIIAAYTEAQGptnqmfdkrrvLFNSVSGTSMSCPHISGICGLLKTLYPHWSPAAIKSAIMTTAT 91
Cdd:cd04848  208 LAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267
Peptidases_S8_8 cd07492
Peptidase S8 family domain, uncharacterized subfamily 8; This family is a member of the ...
21-91 3.89e-03

Peptidase S8 family domain, uncharacterized subfamily 8; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173817 [Multi-domain]  Cd Length: 222  Bit Score: 35.39  E-value: 3.89e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 645306657  21 ITAPGVSIIAayteaqgPTNQMFDKRrvlfnsVSGTSMSCPHISGICGLLKTLYPHWSPAAIKSAIMTTAT 91
Cdd:cd07492  165 FSADGVDIIA-------PAPHGRYLT------VSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222
Peptidases_S8_2 cd07488
Peptidase S8 family domain, uncharacterized subfamily 2; This family is a member of the ...
53-90 7.43e-03

Peptidase S8 family domain, uncharacterized subfamily 2; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173813  Cd Length: 247  Bit Score: 34.75  E-value: 7.43e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 645306657  53 VSGTSMSCPHISGICGLLKTLY------PHWSPAAIKSAIMTTA 90
Cdd:cd07488  204 VSGTSFSAPLVTGIIALLLEFYdrqykkGNNNLIALRALVSSSV 247
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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