|
Name |
Accession |
Description |
Interval |
E-value |
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
10-239 |
7.12e-93 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 272.32 E-value: 7.12e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSH 89
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYGLprKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 644489132 168 GLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDADGFEDTYFRCME 239
Cdd:COG1131 161 GLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARLLEDVFLELTG 232
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
10-236 |
1.05e-76 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 231.67 E-value: 1.05e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSH 89
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGVAD--PAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:COG4555 82 ERGLYDRLTVRENIRYFAELYGLFDeeLKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTN 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644489132 168 GLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDA----DGFEDTYFR 236
Cdd:COG4555 162 GLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREeigeENLEDAFVA 234
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
8-196 |
4.02e-71 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 216.19 E-value: 4.02e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLV 87
Cdd:COG4133 1 MMLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 SHQSFLYDDLTARENLEFYAGLYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:COG4133 81 GHADGLKPELTVRENLRFWAALYGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFT 160
|
170 180
....*....|....*....|....*....
gi 644489132 168 GLDEHAASVLRERLRALHDRRRTIVMVTH 196
Cdd:COG4133 161 ALDAAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
10-216 |
3.95e-70 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 212.64 E-value: 3.95e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSH 89
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFyaglygvadpagraeellrqvdlydrrdspvgafSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:cd03230 81 EPSLYENLTVRENLKL----------------------------------SGGMKQRLALAQALLHDPELLILDEPTSGL 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 644489132 170 DEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
12-217 |
2.42e-65 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 202.21 E-value: 2.42e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSHQS 91
Cdd:cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 92 FLYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:cd03265 83 SVDDELTGWENLYIHARLYGVpgAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGL 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 644489132 170 DEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03265 163 DPQTRAHVWEYIEKLKEEFGmTILLTTHYMEEAEQLCDRVAIIDHGRII 211
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
17-217 |
1.08e-64 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 203.01 E-value: 1.08e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 17 KAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSHQSFLYDD 96
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 97 LTARENLEFYAGLYGVADPAG--RAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAA 174
Cdd:TIGR01188 81 LTGRENLEMMGRLYGLPKDEAeeRAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 644489132 175 SVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:TIGR01188 161 RAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
10-218 |
3.52e-62 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 193.74 E-value: 3.52e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAF----GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLG 85
Cdd:cd03266 2 ITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 LVSHQSFLYDDLTARENLEFYAGLYGVADPA--GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDEltARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 164 EPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
7-217 |
5.29e-61 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 191.02 E-value: 5.29e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFG----GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRA 82
Cdd:COG1136 2 SPLLELRNLTKSYGtgegEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERELA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 83 RL-----GLVsHQSF-LYDDLTARENLEF---YAGLyGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARAL 153
Cdd:COG1136 82 RLrrrhiGFV-FQFFnLLPELTALENVALpllLAGV-SRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 154 VNDPDLLLLDEPyTG-LDEHAASVLRERLRALHDRR-RTIVMVTHNLRRgIESATRLGILARGRLV 217
Cdd:COG1136 160 VNRPKLILADEP-TGnLDSKTGEEVLELLRELNRELgTTIVMVTHDPEL-AARADRVIRLRDGRIV 223
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
10-199 |
2.60e-60 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 189.24 E-value: 2.60e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGG----VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARL- 84
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 ----GLVsHQSF-LYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDP 157
Cdd:cd03255 81 rrhiGFV-FQSFnLLPDLTALENVELPLLLAGVpkKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 644489132 158 DLLLLDEPyTG-LDEHAASVLRERLRAL-HDRRRTIVMVTHNLR 199
Cdd:cd03255 160 KIILADEP-TGnLDSETGKEVMELLRELnKEAGTTIVVVTHDPE 202
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
10-219 |
4.82e-59 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 185.79 E-value: 4.82e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVE--ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLV 87
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 SHQSFLYDDLTARENLEFYAGLYGVADPAGRA--EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEP 165
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEevELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 166 YTGLDEHA-----ASVLRERlralhdRRRTIVMVTHNLRRGIESATRLGILARGRLVFL 219
Cdd:cd03263 161 TSGLDPASrraiwDLILEVR------KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
10-218 |
1.83e-58 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 183.96 E-value: 1.83e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRaRLG-LVS 88
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALR-RIGaLIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 89 HQSFlYDDLTARENLEFYAGLYGVadPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTG 168
Cdd:cd03268 80 APGF-YPNLTARENLRLLARLLGI--RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 169 LDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
5-234 |
5.25e-58 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 184.14 E-value: 5.25e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 5 AGEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDpeafRARL 84
Cdd:COG1121 2 MMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRA----RRRI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVShQSFLYDD---LTARE----NLEFYAGLYGVADPAGR--AEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVN 155
Cdd:COG1121 78 GYVP-QRAEVDWdfpITVRDvvlmGRYGRRGLFRRPSRADReaVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 156 DPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDADGFEDTY 234
Cdd:COG1121 157 DPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGLVAHGPPEEVLTPENLSRAY 235
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
10-218 |
2.48e-57 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 181.24 E-value: 2.48e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGeFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSH 89
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGVADPA--GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEvkARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 644489132 168 GLDehaaSVLRERLRALHDR---RRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:cd03264 160 GLD----PEERIRFRNLLSElgeDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
10-217 |
2.13e-56 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 179.56 E-value: 2.13e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVsh 89
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSF----LYDDLTARENLE------------FYAGLYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARAL 153
Cdd:cd03219 79 RTFqiprLFPELTVLENVMvaaqartgsgllLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 154 VNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
4-222 |
1.07e-55 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 178.74 E-value: 1.07e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 4 SAGEPFLTVEGLRKAF----GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleDDPEA 79
Cdd:COG1116 2 SAAAPALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDG----KPVTG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 80 FRARLGLVsHQSF-LYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVND 156
Cdd:COG1116 78 PGPDRGVV-FQEPaLLPWLTVLDNVALGLELRGVpkAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALAND 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 157 PDLLLLDEPYTGLDEHAASVLRERLRALH-DRRRTIVMVTHNlrrgIESATRLGilarGRLVFLAGR 222
Cdd:COG1116 157 PEVLLMDEPFGALDALTRERLQDELLRLWqETGKTVLFVTHD----VDEAVFLA----DRVVVLSAR 215
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
10-228 |
7.64e-55 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 175.60 E-value: 7.64e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAF-GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-EDDPEAFRARLGLV 87
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDItKKNLRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 ----SHQSFlydDLTARENLEFyaGL--YGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDL 159
Cdd:COG1122 81 fqnpDDQLF---APTVEEDVAF--GPenLGLprEEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEV 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 160 LLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:COG1122 156 LVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSD 224
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
10-225 |
1.37e-54 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 177.22 E-value: 1.37e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPeafRARLGLVSH 89
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPED---RRRIGYLPE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:COG4152 79 ERGLYPKMKVGEQLVYLARLKGLskAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 644489132 168 GLDEHAASVLRERLRALHDRRRTIVMVTHNLrrgiESATRL----GILARGRLVFLAGRDEV 225
Cdd:COG4152 159 GLDPVNVELLKDVIRELAAKGTTVIFSSHQM----ELVEELcdriVIINKGRKVLSGSVDEI 216
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
10-217 |
4.72e-54 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 173.09 E-value: 4.72e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRaRLGLVSH 89
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR-NIGMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFyaGLYGVADPAG----RAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEP 165
Cdd:cd03259 80 DYALFPHLTVAENIAF--GLKLRGVPKAeiraRVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 644489132 166 YTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03259 158 LSALDAKLREELREELKELQRELGiTTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
5-227 |
1.20e-53 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 172.86 E-value: 1.20e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 5 AGEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL----EDDPEAF 80
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDItglsEKELYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 81 RARLGLVSHQSFLYDDLTARENLEFYAGLYGVADPA---GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDP 157
Cdd:COG1127 81 RRRIGMLFQGGALFDSLTVFENVAFPLREHTDLSEAeirELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644489132 158 DLLLLDEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDA 227
Cdd:COG1127 161 EILLYDEPTAGLDPITSAVIDELIRELRDELGlTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
12-215 |
3.46e-53 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 170.73 E-value: 3.46e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVE--ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-EDDPEAFRARLGLV- 87
Cdd:cd03225 2 LKNLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLtKLSLKELRRKVGLVf 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 ---SHQSFLyddLTARENLEFYAGLYGVADP--AGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLL 162
Cdd:cd03225 82 qnpDDQFFG---PTVEEEVAFGLENLGLPEEeiEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 644489132 163 DEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGR 215
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
10-228 |
3.64e-53 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 171.08 E-value: 3.64e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLV-- 87
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGyv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 --SHQSFlyDDLTARENLEFYAGLYGVADPAGRAEELLRQV-DLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDE 164
Cdd:cd03224 81 peGRRIF--PELTVEENLLLGAYARRRAKRKARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 165 PYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
10-217 |
3.68e-53 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 170.73 E-value: 3.68e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGG----VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleDDPEAFRARLG 85
Cdd:cd03293 1 LEVRNVSKTYGGgggaVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG----EPVTGPGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 LVSHQSFLYDDLTARENLEFYAGLYGVADP--AGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAeaRERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 164 EPYTGLDEHAASVLRERL-RALHDRRRTIVMVTHNLRRGIESATRLGILAR--GRLV 217
Cdd:cd03293 157 EPFSALDALTREQLQEELlDIWRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIV 213
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
6-217 |
4.44e-53 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 171.76 E-value: 4.44e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 6 GEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLG 85
Cdd:COG0411 1 SDPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 LVshQSF----LYDDLTARENLE----------FYAGLYGVADPAG-------RAEELLRQVDLYDRRDSPVGAFSRGMQ 144
Cdd:COG0411 81 IA--RTFqnprLFPELTVLENVLvaaharlgrgLLAALLRLPRARReereareRAEELLERVGLADRADEPAGNLSYGQQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 145 QRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRR-RTIVMVTHNLR--RGIesATRLGILARGRLV 217
Cdd:COG0411 159 RRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERgITILLIEHDMDlvMGL--ADRIVVLDFGRVI 232
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
12-198 |
5.98e-53 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 170.02 E-value: 5.98e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDpeafRARLGLVShQS 91
Cdd:cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE----RKRIGYVP-QR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 92 FLYD---DLTARE----NLEFYAGLYGVADPAGR--AEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLL 162
Cdd:cd03235 77 RSIDrdfPISVRDvvlmGLYGHKGLFRRLSKADKakVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLL 156
|
170 180 190
....*....|....*....|....*....|....*.
gi 644489132 163 DEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:cd03235 157 DEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL 192
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
10-217 |
6.58e-52 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 167.46 E-value: 6.58e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPeafRARLGLVSH 89
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA---RNRIGYLPE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLkkEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 168 GLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03269 158 GLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
20-217 |
3.74e-51 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 166.00 E-value: 3.74e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL----EDDPEAFRARLGLVsHQSF-LY 94
Cdd:COG2884 13 GGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLsrlkRREIPYLRRRIGVV-FQDFrLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 95 DDLTARENLEF---YAGlYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPyTG-LD 170
Cdd:COG2884 92 PDRTVYENVALplrVTG-KSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLADEP-TGnLD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 644489132 171 EHAASVLRERLRALHDRRRTIVMVTHNL-------RRGIEsatrlgiLARGRLV 217
Cdd:COG2884 170 PETSWEIMELLEEINRRGTTVLIATHDLelvdrmpKRVLE-------LEDGRLV 216
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
8-217 |
7.41e-51 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 169.12 E-value: 7.41e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPeAFRARLGLV 87
Cdd:COG3842 4 PALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLP-PEKRNVGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 ShQSF-LYDDLTARENLEFyaGL----YGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLL 162
Cdd:COG3842 83 F-QDYaLFPHLTVAENVAF--GLrmrgVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 163 DEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:COG3842 160 DEPLSALDAKLREEMREELRRLQRELGiTFIYVTHDQEEALALADRIAVMNDGRIE 215
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
7-228 |
9.65e-51 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 165.16 E-value: 9.65e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGL 86
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 V----SHQSFlyDDLTARENLEfyAGLYGVADPAGRAEELLRQVD----LYDRRDSPVGAFSRGMQQRLTIARALVNDPD 158
Cdd:COG0410 81 GyvpeGRRIF--PSLTVEENLL--LGAYARRDRAEVRADLERVYElfprLKERRRQRAGTLSGGEQQMLAIGRALMSRPK 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644489132 159 LLLLDEPYTGLdehAASV---LRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:COG0410 157 LLLLDEPSLGL---APLIveeIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLAD 226
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
10-234 |
2.21e-50 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 164.83 E-value: 2.21e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRAR-LGLVS 88
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARrIAYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 89 HQSFLYDDLTARENLEF----YAGLYGVADPAGR--AEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLL 162
Cdd:COG1120 82 QEPPAPFGLTVRELVALgrypHLGLFGRPSAEDReaVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 163 DEPYTGLD-EHAASVLrERLRAL-HDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV-DADGFEDTY 234
Cdd:COG1120 162 DEPTSHLDlAHQLEVL-ELLRRLaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVlTPELLEEVY 235
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
7-225 |
2.31e-50 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 164.87 E-value: 2.31e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSG-TVRIRGFDL-EDDPEAFRARL 84
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRgGEDVWELRKRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVShqSFLYDDLTARENLE------FYA--GLYGVADPA--GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALV 154
Cdd:COG1119 81 GLVS--PALQLRFPRDETVLdvvlsgFFDsiGLYREPTDEqrERARELLELLGLAHLADRPFGTLSQGEQRRVLIARALV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 644489132 155 NDPDLLLLDEPYTGLDEHAASVLRERLRAL-HDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:COG1119 159 KDPELLILDEPTAGLDLGARELLLALLDKLaAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEV 230
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
2-225 |
7.05e-50 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 170.08 E-value: 7.05e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLRKAF-----GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL--- 73
Cdd:COG1123 253 AAAAAEPLLEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLtkl 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 74 -EDDPEAFRARLGLVsHQ---SFLYDDLTARENLEFYAGLYGVADPAG---RAEELLRQVDL-YDRRDSPVGAFSRGMQQ 145
Cdd:COG1123 333 sRRSLRELRRRVQMV-FQdpySSLNPRMTVGDIIAEPLRLHGLLSRAErreRVAELLERVGLpPDLADRYPHELSGGQRQ 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 146 RLTIARALVNDPDLLLLDEPYTGLDE-HAASVLrERLRALHDRR-RTIVMVTHNLR--RGIesATRLGILARGRLVFLAG 221
Cdd:COG1123 412 RVAIARALALEPKLLILDEPTSALDVsVQAQIL-NLLRDLQRELgLTYLFISHDLAvvRYI--ADRVAVMYDGRIVEDGP 488
|
....
gi 644489132 222 RDEV 225
Cdd:COG1123 489 TEEV 492
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
10-217 |
2.37e-49 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 161.58 E-value: 2.37e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLL-----RPTSGTVRIRG---FDLEDDPEAFR 81
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNdlipgAPDEGEVLLDGkdiYDLDVDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ARLGLVSHQSFLYDdLTARENLEFYAGLYGVAD---PAGRAEELLRQVDLYDR--RDSPVGAFSRGMQQRLTIARALVND 156
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLkeeLDERVEEALRKAALWDEvkDRLHALGLSGGQQQRLCLARALANE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644489132 157 PDLLLLDEPYTGLDEHAASVLRERLRALHdRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELK-KEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
10-216 |
1.52e-48 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 158.83 E-value: 1.52e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVS 88
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAmPPPEWRRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 89 HQSFLYDDlTARENLEFYAGLYGVADPAGRAEELLRQVDL-YDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:COG4619 81 QEPALWGG-TVRDNLPFPFQLRERKFDRERALELLERLGLpPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 644489132 168 GLDEHAASVLRERLRAL-HDRRRTIVMVTHN---LRRgieSATRLGILARGRL 216
Cdd:COG4619 160 ALDPENTRRVEELLREYlAEEGRAVLWVSHDpeqIER---VADRVLTLEAGRL 209
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
10-217 |
1.86e-47 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 160.24 E-value: 1.86e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRaRLGLVsH 89
Cdd:COG3839 4 LELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKDR-NIAMV-F 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSF-LYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:COG3839 82 QSYaLYPHMTVYENIAFPLKLRKVpkAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLLDEPL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 167 TGLDEHAASVLRERLRALHDRRR-TIVMVTHNLrrgIES---ATRLGILARGRLV 217
Cdd:COG3839 162 SNLDAKLRVEMRAEIKRLHRRLGtTTIYVTHDQ---VEAmtlADRIAVMNDGRIQ 213
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
12-227 |
4.04e-47 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 155.74 E-value: 4.04e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL----EDDPEAFRARLGLV 87
Cdd:cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIsglsEAELYRLRRRMGML 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 SHQSFLYDDLTARENLEFYAGLYGVADPA---GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDE 164
Cdd:cd03261 83 FQSGALFDSLTVFENVAFPLREHTRLSEEeirEIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 165 PYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDA 227
Cdd:cd03261 163 PTAGLDPIASGVIDDLIRSLKKELGlTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
8-234 |
8.81e-47 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 155.60 E-value: 8.81e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAF-GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE----AFRA 82
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGralrRLRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 83 RLGLVsHQSF-LYDDLTAREN-----------LEFYAGLYGVADPAgRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIA 150
Cdd:COG3638 81 RIGMI-FQQFnLVPRLSVLTNvlagrlgrtstWRSLLGLFPPEDRE-RALEALERVGLADKAYQRADQLSGGQQQRVAIA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 151 RALVNDPDLLLLDEPYTGLDEHAASVLRERLRALH-DRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDADG 229
Cdd:COG3638 159 RALVQEPKLILADEPVASLDPKTARQVMDLLRRIArEDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAELTDAV 238
|
....*
gi 644489132 230 FEDTY 234
Cdd:COG3638 239 LREIY 243
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
22-218 |
9.56e-47 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 155.18 E-value: 9.56e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 22 VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSHQ-SFLYDDLTAR 100
Cdd:cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQkTQLWWDLPVI 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLEFYAGLYGVaDPA---GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVL 177
Cdd:cd03267 114 DSFYLLAAIYDL-PPArfkKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 644489132 178 RERLRALH-DRRRTIVMVTHNLrRGIES-ATRLGILARGRLVF 218
Cdd:cd03267 193 RNFLKEYNrERGTTVLLTSHYM-KDIEAlARRVLVIDKGRLLY 234
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
11-215 |
6.13e-46 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 150.47 E-value: 6.13e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 11 TVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-EDDPEAFRARLGLVsH 89
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIaKLPLEELRRRIGYV-P 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QsflyddltarenlefyaglygvadpagraeellrqvdlydrrdspvgaFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:cd00267 80 Q------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGL 111
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 644489132 170 DEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGR 215
Cdd:cd00267 112 DPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
25-165 |
8.68e-46 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 149.72 E-value: 8.68e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-EDDPEAFRARLGLVSHQSFLYDDLTARENL 103
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLtDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 104 EFYAGLYGVADPA--GRAEELLRQVDLYDRRDSPVGA----FSRGMQQRLTIARALVNDPDLLLLDEP 165
Cdd:pfam00005 81 RLGLLLKGLSKREkdARAEEALEKLGLGDLADRPVGErpgtLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
10-215 |
2.01e-45 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 149.64 E-value: 2.01e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL---EDDPEAFRARLGL 86
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtdlEDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VSHQSFLYDDLTARENLEFyaGLYGvadpagraeellrqvdlydrrdspvgafsrGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:cd03229 81 VFQDFALFPHLTVLENIAL--GLSG------------------------------GQQQRVALARALAMDPDVLLLDEPT 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 167 TGLDEHAASVLRERLRALHDRR-RTIVMVTHNLRRGIESATRLGILARGR 215
Cdd:cd03229 129 SALDPITRREVRALLKSLQAQLgITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
10-196 |
3.93e-45 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 150.91 E-value: 3.93e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED---DPEAFRARLGL 86
Cdd:COG1126 2 IEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDskkDINKLRRKVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VsHQSF-LYDDLTARENLEFyaGLYGV-----ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLL 160
Cdd:COG1126 82 V-FQQFnLFPHLTVLENVTL--APIKVkkmskAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKVM 158
|
170 180 190
....*....|....*....|....*....|....*..
gi 644489132 161 LLDEPYTGLD-EHAASVLrERLRALHDRRRTIVMVTH 196
Cdd:COG1126 159 LFDEPTSALDpELVGEVL-DVMRDLAKEGMTMVVVTH 194
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
10-217 |
4.79e-45 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 150.42 E-value: 4.79e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGG----VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEA----FR 81
Cdd:cd03258 2 IELKNVSKVFGDtggkVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKelrkAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ARLGLVSHQSFLYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDL 159
Cdd:cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVpkAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 644489132 160 LLLDEPYTGLD-EHAASVLrERLRALHDRRR-TIVMVTHNLR--RGIesATRLGILARGRLV 217
Cdd:cd03258 162 LLCDEATSALDpETTQSIL-ALLRDINRELGlTIVLITHEMEvvKRI--CDRVAVMEKGEVV 220
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
10-225 |
5.79e-45 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 150.53 E-value: 5.79e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVE-ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFD-LEDDPEAFRARLGLV 87
Cdd:cd03295 1 IEFENVTKRYGGGKkAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDiREQDPVELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 SHQSFLYDDLTARENLEFYAGLYGVADP--AGRAEELLRQVDLYDR--RDSPVGAFSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEkiRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644489132 164 EPYTGLDEHAASVLRERLRALHDR-RRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:cd03295 161 EPFGALDPITRDQLQEEFKRLQQElGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
20-215 |
8.19e-45 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 149.32 E-value: 8.19e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE----AFRARLGLVSHQSFLYD 95
Cdd:TIGR02673 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGrqlpLLRRRIGVVFQDFRLLP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 96 DLTARENLEFYAGLYGVADPA--GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD-EH 172
Cdd:TIGR02673 93 DRTVYENVALPLEVRGKKEREiqRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDpDL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 644489132 173 AASVLReRLRALHDRRRTIVMVTHNLRRGIESATRLGILARGR 215
Cdd:TIGR02673 173 SERILD-LLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
7-198 |
1.23e-44 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 155.95 E-value: 1.23e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLE-DDP-EAFRARL 84
Cdd:COG1129 2 EPLLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRfRSPrDAQAAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVsHQSF-LYDDLTARENLefYAGLY----GVADPAG---RAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVND 156
Cdd:COG1129 82 AII-HQELnLVPNLSVAENI--FLGREprrgGLIDWRAmrrRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRD 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 644489132 157 PDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:COG1129 159 ARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRL 200
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-196 |
2.67e-44 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 148.74 E-value: 2.67e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 1 MAASAgEPFLTVEGLRKAFGG----VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL--- 73
Cdd:COG4181 1 MSSSS-APIIELRGLTKTVGTgageLTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLfal 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 74 -EDDPEAFRAR-LGLVsHQSF-LYDDLTAREN----LEfyagLYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQR 146
Cdd:COG4181 80 dEDARARLRARhVGFV-FQSFqLLPTLTALENvmlpLE----LAGRRDARARARALLERVGLGHRLDHYPAQLSGGEQQR 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 147 LTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTH 196
Cdd:COG4181 155 VALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGtTLVLVTH 205
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
11-217 |
6.50e-44 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 146.04 E-value: 6.50e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 11 TVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRAR-LGLVSh 89
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARkIAYVP- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 qsflyddltarenlefyaglygvadpagraeELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:cd03214 80 -------------------------------QALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHL 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 170 D-EHAASVLrERLRAL-HDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03214 129 DiAHQIELL-ELLRRLaRERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
5-228 |
6.76e-44 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 154.03 E-value: 6.76e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 5 AGEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLE-DDP-EAFRA 82
Cdd:COG3845 1 MMPPALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRiRSPrDAIAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 83 RLGLVsHQSF-LYDDLTARENL-----EFYAGLYGVADPAGRAEELLRQ----VDLydrrDSPVGAFSRGMQQRLTIARA 152
Cdd:COG3845 81 GIGMV-HQHFmLVPNLTVAENIvlglePTKGGRLDRKAARARIRELSERygldVDP----DAKVEDLSVGEQQRVEILKA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 153 LVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:COG3845 156 LYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETSEE 231
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
8-217 |
1.85e-42 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 147.11 E-value: 1.85e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRArLGLV 87
Cdd:TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD-YGIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 sHQSF-LYDDLTARENLEFyaGLYGV----ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLL 162
Cdd:TIGR03265 82 -FQSYaLFPNLTVADNIAY--GLKNRgmgrAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 163 DEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGvTTIMVTHDQEEALSMADRIVVMNHGVIE 214
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
14-215 |
2.40e-42 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 146.51 E-value: 2.40e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 14 GLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSHQSFL 93
Cdd:PRK13536 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 94 YDDLTARENLEFYAGLYGVADPAGRA--EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDE 171
Cdd:PRK13536 126 DLEFTVRENLLVFGRYFGMSTREIEAviPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 644489132 172 HAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGR 215
Cdd:PRK13536 206 HARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGR 249
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
7-215 |
3.63e-42 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 145.33 E-value: 3.63e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGL 86
Cdd:PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VSHQSFLYDDLTARENLEFYAGLYGVADPAGRA--EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDE 164
Cdd:PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAlvPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 165 PYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGR 215
Cdd:PRK13537 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
10-234 |
5.44e-42 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 143.09 E-value: 5.44e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFG-GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE----AFRARL 84
Cdd:cd03256 1 IEVENLSKTYPnGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGkalrQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVsHQSF-LYDDLTAREN--------LEFYAGLYGVADPAG--RAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARAL 153
Cdd:cd03256 81 GMI-FQQFnLIERLSVLENvlsgrlgrRSTWRSLFGLFPKEEkqRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 154 VNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRR-RTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDADGFED 232
Cdd:cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEgITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVLDE 239
|
..
gi 644489132 233 TY 234
Cdd:cd03256 240 IY 241
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
10-216 |
8.71e-42 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 141.51 E-value: 8.71e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAF---RARLGL 86
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNInelRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VsHQSF-LYDDLTARENLEFyaGLYGV-----ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLL 160
Cdd:cd03262 81 V-FQQFnLFPHLTVLENITL--APIKVkgmskAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVM 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 161 LLDEPYTGLD-EHAASVLrERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:cd03262 158 LFDEPTSALDpELVGEVL-DVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
20-215 |
2.13e-41 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 139.06 E-value: 2.13e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlT 98
Cdd:cd03228 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNIAYVPQDPFLFSG-T 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLefyaglygvadpagraeellrqvdlydrrdspvgaFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLR 178
Cdd:cd03228 92 IRENI-----------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL 136
|
170 180 190
....*....|....*....|....*....|....*..
gi 644489132 179 ERLRALHdRRRTIVMVTHNLRRgIESATRLGILARGR 215
Cdd:cd03228 137 EALRALA-KGKTVIVIAHRLST-IRDADRIIVLDDGR 171
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
10-236 |
3.31e-41 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 141.09 E-value: 3.31e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFG----GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARL 84
Cdd:COG1124 2 LEVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRrRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVSHQSflYDDL----TARENLEFYAGLYGVADPAGRAEELLRQVDLYDR-RDSPVGAFSRGMQQRLTIARALVNDPDL 159
Cdd:COG1124 82 QMVFQDP--YASLhprhTVDRILAEPLRIHGLPDREERIAELLEQVGLPPSfLDRYPHQLSGGQRQRVAIARALILEPEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 160 LLLDEPYTGLDehaASVLRERLRALHDRRR----TIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVdADGFEDTYF 235
Cdd:COG1124 160 LLLDEPTSALD---VSVQAEILNLLKDLREerglTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADL-LAGPKHPYT 235
|
.
gi 644489132 236 R 236
Cdd:COG1124 236 R 236
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
10-217 |
4.75e-41 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 137.95 E-value: 4.75e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRG--FDLEDDPEAFRARLGLV 87
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGkeVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 sHQsflyddltarenlefyaglygvadpagraeellrqvdlydrrdspvgaFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:cd03216 81 -YQ------------------------------------------------LSVGERQMVEIARALARNARLLILDEPTA 111
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 168 GLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03216 112 ALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
10-217 |
6.06e-41 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 139.95 E-value: 6.06e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAF----GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLG 85
Cdd:cd03257 2 LEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 lvSHQSFLYDD----LTAR--------ENLEFYAGLYGVADPAGRAEELLRQVDLYDRR-DSPVGAFSRGMQQRLTIARA 152
Cdd:cd03257 82 --KEIQMVFQDpmssLNPRmtigeqiaEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVlNRYPHELSGGQRQRVAIARA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 153 LVNDPDLLLLDEPYTGLDEH-AASVLRErLRALHDRR-RTIVMVTHNLR--RGIesATRLGILARGRLV 217
Cdd:cd03257 160 LALNPKLLIADEPTSALDVSvQAQILDL-LKKLQEELgLTLLFITHDLGvvAKI--ADRVAVMYAGKIV 225
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
7-228 |
9.01e-41 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 145.82 E-value: 9.01e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAF--GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPT---SGTVRIRGFDLEDDPEAFR 81
Cdd:COG1123 2 TPLLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 AR-LGLVShQSFLY--DDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVND 156
Cdd:COG1123 82 GRrIGMVF-QDPMTqlNPVTVGDQIAEALENLGLsrAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644489132 157 PDLLLLDEPYTGLDEHAASVLRERLRALHDRR-RTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:COG1123 161 PDLLIADEPTTALDVTTQAEILDLLRELQRERgTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAA 233
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
10-217 |
1.39e-40 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 138.91 E-value: 1.39e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPeAFRARLGLVSH 89
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRPVNTVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:cd03300 80 NYALFPHLTVFENIAFGLRLKKLpkAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 168 GLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03300 160 ALDLKLRKDMQLELKRLQKELGiTFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
10-217 |
2.87e-40 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 141.44 E-value: 2.87e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSh 89
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLPPRERRVGFVF- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSF-LYDDLTARENLEFyaGL----YGVADPAGRAEELLRQVDL---YDRRDSpvgAFSRGMQQRLTIARALVNDPDLLL 161
Cdd:COG1118 82 QHYaLFPHMTVAENIAF--GLrvrpPSKAEIRARVEELLELVQLeglADRYPS---QLSGGQRQRVALARALAVEPEVLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 162 LDEPYTGLDEHAASVLRERLRALHDR-RRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:COG1118 157 LDEPFGALDAKVRKELRRWLRRLHDElGGTTVFVTHDQEEALELADRVVVMNQGRIE 213
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
20-216 |
2.90e-40 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 137.54 E-value: 2.90e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEA----FRARLGLVSHQSFLYD 95
Cdd:cd03292 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRaipyLRRKIGVVFQDFRLLP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 96 DLTARENLEFYAGLYGVA--DPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD-EH 172
Cdd:cd03292 92 DRNVYENVAFALEVTGVPprEIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDpDT 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 644489132 173 AASVLReRLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:cd03292 172 TWEIMN-LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
26-207 |
3.65e-40 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 137.24 E-value: 3.65e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 26 RGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSHQSFLYDDLTARENLEF 105
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 106 YAGLYGVADPAgRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALH 185
Cdd:PRK13538 98 YQRLHGPGDDE-ALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176
|
170 180
....*....|....*....|..
gi 644489132 186 DRRRTIVMVTHNLRRGIESATR 207
Cdd:PRK13538 177 EQGGMVILTTHQDLPVASDKVR 198
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
10-217 |
5.49e-40 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 137.00 E-value: 5.49e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRaRLGLVSH 89
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR-DIAMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGVADPA-----GRAEELLRQVDLYDRRDSpvgAFSRGMQQRLTIARALVNDPDLLLLDE 164
Cdd:cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEidervREVAELLQIEHLLDRKPK---QLSGGQRQRVALGRAIVREPKVFLMDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 644489132 165 PYTGLDEHAASVLRERLRALHDR-RRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03301 157 PLSNLDAKLRVQMRAELKRLQQRlGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
15-217 |
5.78e-40 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 138.55 E-value: 5.78e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 15 LRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-----EDDPEAFRARLGLVsH 89
Cdd:cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIaamsrKELRELRRKKISMV-F 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSF-LYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:cd03294 109 QSFaLLPHRTVLENVAFGLEVQGVprAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAF 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 644489132 167 TGLDEHAASVLRERLRALHD-RRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03294 189 SALDPLIRREMQDELLRLQAeLQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
20-225 |
7.61e-40 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 145.36 E-value: 7.61e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlT 98
Cdd:COG2274 486 DSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQiDPASLRRQIGVVLQDVFLFSG-T 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLEFYAGLygvADPAgRAEELLRQVDLYD--RR-----DSPVG----AFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:COG2274 565 IRENITLGDPD---ATDE-EIIEAARLAGLHDfiEAlpmgyDTVVGeggsNLSGGQRQRLAIARALLRNPRILILDEATS 640
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 168 GLDEHAASVLRERLRALhDRRRTIVMVTHNLRRgIESATRLGILARGRLVFLAGRDEV 225
Cdd:COG2274 641 ALDAETEAIILENLRRL-LKGRTVIIIAHRLST-IRLADRIIVLDKGRIVEDGTHEEL 696
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
10-228 |
3.66e-39 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 135.36 E-value: 3.66e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGL--V 87
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIgyL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 SHQSFLYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEP 165
Cdd:cd03218 81 PQEASIFRKLTVEENILAVLEIRGLskKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644489132 166 YTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
13-218 |
4.61e-39 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 137.53 E-value: 4.61e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 13 EGLRKAFGG--------VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARL 84
Cdd:COG4586 18 PGLKGALKGlfrreyreVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPFKRRKEFARRI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVSHQ-SFLYDDLTARENLEFYAGLYGVADPAGRA--EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLL 161
Cdd:COG4586 98 GVVFGQrSQLWWDLPAIDSFRLLKAIYRIPDAEYKKrlDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILF 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 162 LDEPYTGLDEHAASVLRERLRALHDRRRTIVMVT-HNLrRGIES-ATRLGILARGRLVF 218
Cdd:COG4586 178 LDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTsHDM-DDIEAlCDRVIVIDHGRIIY 235
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
20-218 |
5.36e-39 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 134.58 E-value: 5.36e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleddpeAFRARLGLvshQSFLYDDLTA 99
Cdd:cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG--------RVSSLLGL---GGGFNPELTG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVL 177
Cdd:cd03220 102 RENIYLNGRLLGLsrKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 644489132 178 RERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:cd03220 182 QRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
16-225 |
9.58e-39 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 134.44 E-value: 9.58e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 16 RKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleddpeafraRLG-LVSHQSFLY 94
Cdd:COG1134 33 RTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNG------------RVSaLLELGAGFH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 95 DDLTARENLEFYAGLYGVAdpagRAE--ELLRQV----DLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEpytg 168
Cdd:COG1134 101 PELTGRENIYLNGRLLGLS----RKEidEKFDEIvefaELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVDE---- 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 169 ldehaasVL-----------RERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:COG1134 173 -------VLavgdaafqkkcLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEV 233
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
10-196 |
9.77e-39 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 133.25 E-value: 9.77e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSH 89
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGVADPAgrAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRT--IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTAL 158
|
170 180
....*....|....*....|....*..
gi 644489132 170 DEHAASVLRERLRALHDRRRTIVMVTH 196
Cdd:TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
20-217 |
4.68e-38 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 139.12 E-value: 4.68e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlT 98
Cdd:COG4988 348 GGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDlDPASWRRQIAWVPQNPYLFAG-T 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLEFYAglyGVADPAgRAEELLRQVDLYD--RR-----DSPVGA----FSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:COG4988 427 IRENLRLGR---PDASDE-ELEAALEAAGLDEfvAAlpdglDTPLGEggrgLSGGQAQRLALARALLRDAPLLLLDEPTA 502
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 168 GLDEHAASVLRERLRALHdRRRTIVMVTHNLRRgIESATRLGILARGRLV 217
Cdd:COG4988 503 HLDAETEAEILQALRRLA-KGRTVILITHRLAL-LAQADRILVLDDGRIV 550
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-217 |
6.73e-38 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 138.75 E-value: 6.73e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLRKAF--GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPE 78
Cdd:COG4987 326 APAPGGPSLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDlDED 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 79 AFRARLGLVSHQSFLYDDlTARENLEfyaglygVADPAGRAEEL---LRQVDLYD--RR-----DSPVG----AFSRGMQ 144
Cdd:COG4987 406 DLRRRIAVVPQRPHLFDT-TLRENLR-------LARPDATDEELwaaLERVGLGDwlAAlpdglDTWLGeggrRLSGGER 477
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644489132 145 QRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRAlHDRRRTIVMVTHNLrRGIESATRLGILARGRLV 217
Cdd:COG4987 478 RRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLE-ALAGRTVLLITHRL-AGLERMDRILVLEDGRIV 548
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
10-217 |
1.20e-37 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 134.05 E-value: 1.20e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAF----GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE----AFR 81
Cdd:COG1135 2 IELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSErelrAAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ARLGLVsHQSF-LYDDLTARENLEF---YAGlYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDP 157
Cdd:COG1135 82 RKIGMI-FQHFnLLSSRTVAENVALpleIAG-VPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 158 DLLLLDEPYTGLD-EHAASVLrERLRALHDRRR-TIVMVTHNLR--RGIesATRLGILARGRLV 217
Cdd:COG1135 160 KVLLCDEATSALDpETTRSIL-DLLKDINRELGlTIVLITHEMDvvRRI--CDRVAVLENGRIV 220
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
10-234 |
1.59e-37 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 131.65 E-value: 1.59e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFG-GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL----EDDPEAFRARL 84
Cdd:TIGR02315 2 LEVENLSKVYPnGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDItklrGKKLRKLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVSHQSFLYDDLTARENL--------EFYAGLYGVADPAG--RAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALV 154
Cdd:TIGR02315 82 GMIFQHYNLIERLTVLENVlhgrlgykPTWRSLLGRFSEEDkeRALSALERVGLADKAYQRADQLSGGQQQRVAIARALA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 155 NDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVT-HNLRRGIESATRLGILARGRLVFLAGRDEVDADGFEDT 233
Cdd:TIGR02315 162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINlHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLRHI 241
|
.
gi 644489132 234 Y 234
Cdd:TIGR02315 242 Y 242
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
10-208 |
1.79e-37 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 130.38 E-value: 1.79e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDpeAFRARLGLVSH 89
Cdd:PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP--DVAEACHYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGvaDPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:PRK13539 81 RNAMKPALTVAENLEFWAAFLG--GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158
|
170 180 190
....*....|....*....|....*....|....*....
gi 644489132 170 DEHAASVLRERLRALHDRRRTIVMVTHNlRRGIESATRL 208
Cdd:PRK13539 159 DAAAVALFAELIRAHLAQGGIVIAATHI-PLGLPGAREL 196
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
10-229 |
6.72e-37 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 129.57 E-value: 6.72e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGL--V 87
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIayV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 SHQSFLYDDLTARENLEFyaglygVADPAGRAEellRQV--DLYDR-------RDSPVGAFSRGMQQRLTIARALVNDPD 158
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLT------GLAALPRRS---RKIpdEIYELfpvlkemLGRRGGDLSGGQQQQLAIARALVTRPK 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 159 LLLLDEPYTGLDehaASVLRE---RLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDADG 229
Cdd:TIGR03410 152 LLLLDEPTEGIQ---PSIIKDigrVIRRLRAEGGmAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDEDK 223
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
10-225 |
7.31e-37 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 129.77 E-value: 7.31e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRaRLGLVSH 89
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQER-NVGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFyaGL--------YGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLL 161
Cdd:cd03296 82 HYALFRHMTVFDNVAF--GLrvkprserPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 162 LDEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:cd03296 160 LDEPFGALDAKVRKELRRWLRRLHDELHvTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
8-196 |
1.40e-36 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 129.54 E-value: 1.40e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLE-----------DD 76
Cdd:COG4598 7 PALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRlkpdrdgelvpAD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 77 P---EAFRARLGLVsHQSF-LYDDLTARENL-EFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTI 149
Cdd:COG4598 87 RrqlQRIRTRLGMV-FQSFnLWSHMTVLENViEAPVHVLGRpkAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQRAAI 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 644489132 150 ARALVNDPDLLLLDEPYTGLD-EHAASVLRErLRALHDRRRTIVMVTH 196
Cdd:COG4598 166 ARALAMEPEVMLFDEPTSALDpELVGEVLKV-MRDLAEEGRTMLVVTH 212
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
10-223 |
2.06e-36 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 129.21 E-value: 2.06e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGG----VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDdPEAFRarlG 85
Cdd:COG4525 4 LTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG-PGADR---G 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 LVSHQSFLYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:COG4525 80 VVFQKDALLPWLNVLDNVAFGLRLRGVpkAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMD 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 164 EPYTGLDehaaSVLRERLRAL-----HDRRRTIVMVTHNLRRGIESATRLGILAR--GRLV----------FLAGRD 223
Cdd:COG4525 160 EPFGALD----ALTREQMQELlldvwQRTGKGVFLITHSVEEALFLATRLVVMSPgpGRIVerleldfsrrFLAGED 232
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
12-217 |
2.48e-36 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 128.21 E-value: 2.48e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRG--FDLEDDPEAFRARL----- 84
Cdd:COG4161 5 LKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGhqFDFSQKPSEKAIRLlrqkv 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVSHQSFLYDDLTARENL-EFYAGLYGVADPA--GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLL 161
Cdd:COG4161 85 GMVFQQYNLWPHLTVMENLiEAPCKVLGLSKEQarEKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQVLL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 162 LDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:COG4161 165 FDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRII 220
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
10-199 |
7.56e-36 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 127.07 E-value: 7.56e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLvsh 89
Cdd:COG1137 4 LEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGI--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 qSFL------YDDLTAREN----LEFyAGLyGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDL 159
Cdd:COG1137 81 -GYLpqeasiFRKLTVEDNilavLEL-RKL-SKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKF 157
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 644489132 160 LLLDEPYTGLDEHAASVLRERLRALhdRRRTI-VMVT-HNLR 199
Cdd:COG1137 158 ILLDEPFAGVDPIAVADIQKIIRHL--KERGIgVLITdHNVR 197
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
25-218 |
1.09e-35 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 125.36 E-value: 1.09e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRP--TSGTVRIRGFDLedDPEAFRARLGLVSHQSFLYDDLTAREN 102
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGlgVSGEVLINGRPL--DKRSFRKIIGYVPQDDILHPTLTVRET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 103 LEFYAGLYGVadpagraeellrqvdlydrrdspvgafSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLR 182
Cdd:cd03213 103 LMFAAKLRGL---------------------------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLR 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 644489132 183 ALHDRRRTIVMVTHNLRRGI-ESATRLGILARGRLVF 218
Cdd:cd03213 156 RLADTGRTIICSIHQPSSEIfELFDKLLLLSQGRVIY 192
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-198 |
1.80e-35 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 126.30 E-value: 1.80e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATL--LRP---TSGTVRIRGFDLED- 75
Cdd:COG1117 4 PASTLEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMndLIPgarVEGEILLDGEDIYDp 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 76 --DPEAFRARLGLVshqsF---------LYDdltareNLEFYAGLYGVADPA---GRAEELLRQVDLY----DRRDSPVG 137
Cdd:COG1117 84 dvDVVELRRRVGMV----FqkpnpfpksIYD------NVAYGLRLHGIKSKSeldEIVEESLRKAALWdevkDRLKKSAL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644489132 138 AFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDrRRTIVMVTHNL 198
Cdd:COG1117 154 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKK-DYTIVIVTHNM 213
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
10-217 |
2.70e-35 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 125.53 E-value: 2.70e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEaLRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRaRLGLVSH 89
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR-DISYVPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFyaGLYGVADPAGRAEELLRQV-------DLYDRRdspVGAFSRGMQQRLTIARALVNDPDLLLL 162
Cdd:cd03299 79 NYALFPHMTVYKNIAY--GLKKRKVDKKEIERKVLEIaemlgidHLLNRK---PETLSGGEQQRVAIARALVVNPKILLL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 163 DEPYTGLDEHAASVLRERLRALHDRRRTIVM-VTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03299 154 DEPFSALDVRTKEKLREELKKIRKEFGVTVLhVTHDFEEAWALADKVAIMLNGKLI 209
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
13-217 |
4.98e-35 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 126.74 E-value: 4.98e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 13 EGLRKAF-GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQ 90
Cdd:COG1125 5 ENVTKRYpDGTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDlDPVELRRRIGYVIQQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 91 SFLYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLydrrdsPVGAF--------SRGMQQRLTIARALVNDPDLL 160
Cdd:COG1125 85 IGLFPHMTVAENIATVPRLLGWdkERIRARVDELLELVGL------DPEEYrdryphelSGGQQQRVGVARALAADPPIL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 161 LLDEPYTGLDEhaasVLRERL----RALHDR-RRTIVMVTHNlrrgIESATRLG----ILARGRLV 217
Cdd:COG1125 159 LMDEPFGALDP----ITREQLqdelLRLQRElGKTIVFVTHD----IDEALKLGdriaVMREGRIV 216
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
20-198 |
6.93e-35 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 123.52 E-value: 6.93e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdlEDDPEAFRAR-LGLVS----HQsfLY 94
Cdd:cd03226 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG---KPIKAKERRKsIGYVMqdvdYQ--LF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 95 DDlTAREnlEFYAGLYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAA 174
Cdd:cd03226 86 TD-SVRE--ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM 162
|
170 180
....*....|....*....|....
gi 644489132 175 SVLRERLRALHDRRRTIVMVTHNL 198
Cdd:cd03226 163 ERVGELIRELAAQGKAVIVITHDY 186
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
20-217 |
3.01e-34 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 128.74 E-value: 3.01e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlT 98
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDlTLESLRRQIGVVPQDTFLFSG-T 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLefyagLYGVADpAGRAE--ELLRQVDLYD--RR-----DSPVG----AFSRGMQQRLTIARALVNDPDLLLLDEP 165
Cdd:COG1132 430 IRENI-----RYGRPD-ATDEEveEAAKAAQAHEfiEAlpdgyDTVVGergvNLSGGQRQRIAIARALLKDPPILILDEA 503
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 644489132 166 YTGLDEHAASVLRERLRALHdRRRTIVMVTHNLrRGIESATRLGILARGRLV 217
Cdd:COG1132 504 TSALDTETEALIQEALERLM-KGRTTIVIAHRL-STIRNADRILVLDDGRIV 553
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
12-198 |
3.18e-34 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 121.95 E-value: 3.18e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEA-----FRARLGL 86
Cdd:TIGR03608 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKkaskfRREKLGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VsHQSF-LYDDLTARENLEFyaGLYGVADPAGRAEEL----LRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLL 161
Cdd:TIGR03608 81 L-FQNFaLIENETVEENLDL--GLKYKKLSKKEKREKkkeaLEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLIL 157
|
170 180 190
....*....|....*....|....*....|....*..
gi 644489132 162 LDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
18-198 |
3.47e-34 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 121.19 E-value: 3.47e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 18 AFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleddpeafRARLGLVSHQSFLYDDL 97
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG----------GARVAYVPQRSEVPDSL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 98 --TARENLEF----YAGLYGVADPAGRA--EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:NF040873 71 plTVRDLVAMgrwaRRGLWRRLTRDDRAavDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGL 150
|
170 180
....*....|....*....|....*....
gi 644489132 170 DEHAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:NF040873 151 DAESRERIIALLAEEHARGATVVVVTHDL 179
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
12-231 |
1.11e-33 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 121.27 E-value: 1.11e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRG--FDLEDDPEA-----FRARL 84
Cdd:PRK11124 5 LNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGnhFDFSKTPSDkaireLRRNV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVSHQSFLYDDLTARENL-EFYAGLYGVADPAG--RAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLL 161
Cdd:PRK11124 85 GMVFQQYNLWPHLTVQQNLiEAPCRVLGLSKDQAlaRAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLL 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 162 LDEPYTGLD-EHAA---SVLRErlraLHDRRRTIVMVTHNLRRGIESATRLGILARGRLVflagrDEVDADGFE 231
Cdd:PRK11124 165 FDEPTAALDpEITAqivSIIRE----LAETGITQVIVTHEVEVARKTASRVVYMENGHIV-----EQGDASCFT 229
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
10-196 |
1.18e-33 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 120.29 E-value: 1.18e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSH 89
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGVAdpagRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:cd03231 81 APGIKTTLSVLENLRFWHADHSDE----QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156
|
170 180
....*....|....*....|....*..
gi 644489132 170 DEHAASVLRERLRALHDRRRTIVMVTH 196
Cdd:cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
22-217 |
1.25e-33 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 120.77 E-value: 1.25e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 22 VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTAR 100
Cdd:cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYVPQDVTLFYG-TLR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLEFyaglygvADPAGRAEELLRQVDL-------------YDRRDSPVGAF-SRGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:cd03245 96 DNITL-------GAPLADDERILRAAELagvtdfvnkhpngLDLQIGERGRGlSGGQRQAVALARALLNDPPILLLDEPT 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 167 TGLDEHAASVLRERLRALHdRRRTIVMVTHNLRRgIESATRLGILARGRLV 217
Cdd:cd03245 169 SAMDMNSEERLKERLRQLL-GDKTLIIITHRPSL-LDLVDRIIVMDSGRIV 217
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
10-216 |
1.61e-33 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 118.86 E-value: 1.61e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEA--LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGL 86
Cdd:cd03246 1 LEVENVSFRYPGAEPpvLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VSHQSFLYDDlTARENLefyaglygvadpagraeellrqvdlydrrdspvgaFSRGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:cd03246 81 LPQDDELFSG-SIAENI-----------------------------------LSGGQRQRLGLARALYGNPRILVLDEPN 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 167 TGLDEHAASVLRERLRALHDRRRTIVMVTHNlRRGIESATRLGILARGRL 216
Cdd:cd03246 125 SHLDVEGERALNQAIAALKAAGATRIVIAHR-PETLASADRILVLEDGRV 173
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
29-218 |
2.49e-33 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 119.71 E-value: 2.49e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 29 SFTLD-----EGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDD-------PEafRARLGLVSHQSFLYDD 96
Cdd:cd03297 12 DFTLKidfdlNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSrkkinlpPQ--QRKIGLVFQQYALFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 97 LTARENLEFyaGLYGVADPAGR--AEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAA 174
Cdd:cd03297 90 LNVRENLAF--GLKRKRNREDRisVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALR 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 644489132 175 SVLRERLRALHDR-RRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:cd03297 168 LQLLPELKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
4-228 |
9.45e-33 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 124.01 E-value: 9.45e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 4 SAGEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRAR 83
Cdd:PRK15439 6 TTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 84 LG--LVSHQSFLYDDLTARENLEFyaGLYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLL 161
Cdd:PRK15439 86 LGiyLVPQEPLLFPNLSVKENILF--GLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 162 LDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:PRK15439 164 LDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230
|
|
| 3a0107s01c2 |
TIGR00972 |
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ... |
10-217 |
1.55e-32 |
|
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]
Pssm-ID: 273372 [Multi-domain] Cd Length: 247 Bit Score: 118.55 E-value: 1.55e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATL--LRP---TSGTVRIRGFDLED---DPEAFR 81
Cdd:TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMndLVPgvrIEGKVLFDGQDIYDkkiDVVELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ARLGLVSHQSFLYDdLTARENLEFYAGLYGVADPA---GRAEELLRQVDLYDR-----RDSPVGaFSRGMQQRLTIARAL 153
Cdd:TIGR00972 82 RRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKeldEIVEESLKKAALWDEvkdrlHDSALG-LSGGQQQRLCIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 154 VNDPDLLLLDEPYTGLDEHAASVLRERLRALHDrRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELV 222
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
17-216 |
2.29e-32 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 117.89 E-value: 2.29e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 17 KAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED---DPEAFRARLGLVSHQSFL 93
Cdd:PRK09493 9 KHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDpkvDERLIRQEAGMVFQQFYL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 94 YDDLTARENLEFyaGLYGV-----ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTG 168
Cdd:PRK09493 89 FPHLTALENVMF--GPLRVrgaskEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSA 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 644489132 169 LD-EHAASVLRErLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:PRK09493 167 LDpELRHEVLKV-MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
12-196 |
2.77e-32 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 122.87 E-value: 2.77e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleddpeafRARLGLVSHQS 91
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK----------GLRIGYLPQEP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 92 FLYDDLTARE----------------------------NLEFYAGLYGVADPAG------RAEELLRQVDLYDR-RDSPV 136
Cdd:COG0488 71 PLDDDLTVLDtvldgdaelraleaeleeleaklaepdeDLERLAELQEEFEALGgweaeaRAEEILSGLGFPEEdLDRPV 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 137 GAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRalhDRRRTIVMVTH 196
Cdd:COG0488 151 SELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIEWLEEFLK---NYPGTVLVVSH 207
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
7-177 |
3.39e-32 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 117.78 E-value: 3.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGL 86
Cdd:PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VshQSF----LYDDLTARENL----------EFYAGLYgvADPA---------GRAEELLRQVDLYDRRDSPVGAFSRGM 143
Cdd:PRK11300 83 V--RTFqhvrLFREMTVIENLlvaqhqqlktGLFSGLL--KTPAfrraesealDRAATWLERVGLLEHANRQAGNLAYGQ 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 144 QQRLTIARALVNDPDLLLLDEPYTGL----------------DEHAASVL 177
Cdd:PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLnpketkeldeliaelrNEHNVTVL 208
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
8-216 |
4.05e-32 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 123.97 E-value: 4.05e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAF--GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLG 85
Cdd:TIGR01257 927 PGVCVKNLVKIFepSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 LVSHQSFLYDDLTARENLEFYAGLYGVADPAGR--AEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQleMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 644489132 164 EPYTGLDEHAASVLRERLRAlHDRRRTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:TIGR01257 1087 EPTSGVDPYSRRSIWDLLLK-YRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
7-217 |
4.27e-32 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 117.72 E-value: 4.27e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRG-----FDLEDDPEAFR 81
Cdd:PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdgqlRDLYALSEAER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ARL-----GLVsHQSflyddltARENL--EFYAG------LYGV-----ADPAGRAEELLRQVDL-YDRRDSPVGAFSRG 142
Cdd:PRK11701 84 RRLlrtewGFV-HQH-------PRDGLrmQVSAGgnigerLMAVgarhyGDIRATAGDWLERVEIdAARIDDLPTTFSGG 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 143 MQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRAL-HDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLvRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV 231
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
10-225 |
4.66e-32 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 122.55 E-value: 4.66e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEA--LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGL 86
Cdd:COG4618 331 LSVENLTVVPPGSKRpiLRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQwDREELGRHIGY 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VSHQSFLYDDlTARENLefyAGLyGVADP---------AGRAEELLRQVDLYDRRDSPVGAF-SRGMQQRLTIARALVND 156
Cdd:COG4618 411 LPQDVELFDG-TIAENI---ARF-GDADPekvvaaaklAGVHEMILRLPDGYDTRIGEGGARlSGGQRQRIGLARALYGD 485
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 157 PDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNlRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:COG4618 486 PRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHR-PSLLAAVDKLLVLRDGRVQAFGPRDEV 553
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
10-225 |
5.13e-32 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 119.00 E-value: 5.13e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAF----GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRP---TSGTVRIRGFDLED-DPEAFR 81
Cdd:COG0444 2 LEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKlSEKELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 A----RLGLVsHQsflyDDLTA-----------RENLEfYAGLYGVADPAGRAEELLRQVDL---YDRRDSPVGAFSRGM 143
Cdd:COG0444 82 KirgrEIQMI-FQ----DPMTSlnpvmtvgdqiAEPLR-IHGGLSKAEARERAIELLERVGLpdpERRLDRYPHELSGGM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 144 QQRLTIARALVNDPDLLLLDEPYTGLDehaASVLRERLRALHDRRR----TIVMVTHNLrrGI--ESATRLGILARGRLV 217
Cdd:COG0444 156 RQRVMIARALALEPKLLIADEPTTALD---VTIQAQILNLLKDLQRelglAILFITHDL--GVvaEIADRVAVMYAGRIV 230
|
....*...
gi 644489132 218 FLAGRDEV 225
Cdd:COG0444 231 EEGPVEEL 238
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
10-198 |
7.59e-32 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 116.38 E-value: 7.59e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAF-----GGVE--ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIR----GFDLEDDPE 78
Cdd:COG4778 5 LEVENLSKTFtlhlqGGKRlpVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdggWVDLAQASP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 79 ----AFRAR-LGLVSHqsFLY-------DDLTARENLEFyaglyGVADPA--GRAEELLRQVDLYDRR-DSPVGAFSRGM 143
Cdd:COG4778 85 reilALRRRtIGYVSQ--FLRviprvsaLDVVAEPLLER-----GVDREEarARARELLARLNLPERLwDLPPATFSGGE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 144 QQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:COG4778 158 QQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDE 212
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
8-197 |
1.73e-31 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 121.37 E-value: 1.73e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAF----GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAF-- 80
Cdd:PRK10535 3 ALLELKDIRRSYpsgeEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATlDADALaq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 81 --RARLGLVSHQSFLYDDLTARENLEF---YAGLyGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVN 155
Cdd:PRK10535 83 lrREHFGFIFQRYHLLSHLTAAQNVEVpavYAGL-ERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 644489132 156 DPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHN 197
Cdd:PRK10535 162 GGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
10-218 |
5.94e-31 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 114.80 E-value: 5.94e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAF--GGVE---ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARL 84
Cdd:COG1101 2 LELKNLSKTFnpGTVNekrALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 -GLVsHQsflyD-------DLTARENLEFYA------GL-YGVaDPAGRAE--ELLRQVD--LYDRRDSPVGAFSRGMQQ 145
Cdd:COG1101 82 iGRV-FQ----DpmmgtapSMTIEENLALAYrrgkrrGLrRGL-TKKRRELfrELLATLGlgLENRLDTKVGLLSGGQRQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 146 RLTIARALVNDPDLLLLDEPYTGLDEH-AASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:COG1101 156 ALSLLMATLTKPKLLLLDEHTAALDPKtAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIIL 229
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
2-225 |
6.30e-31 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 117.24 E-value: 6.30e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFR 81
Cdd:PRK11607 12 TRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ArLGLVSHQSFLYDDLTARENLEFyaGL----YGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDP 157
Cdd:PRK11607 92 P-INMMFQSYALFPHMTVEQNIAF--GLkqdkLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644489132 158 DLLLLDEPYTGLDEHaasvLRERLR-----ALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:PRK11607 169 KLLLLDEPMGALDKK----LRDRMQlevvdILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-196 |
6.87e-31 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 116.97 E-value: 6.87e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 1 MAASAGEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPeAF 80
Cdd:PRK09452 6 KQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 81 RARLGLVSHQSFLYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPD 158
Cdd:PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTpaAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 644489132 159 LLLLDEPYTGLDEHAASVLRERLRALHdrRR---TIVMVTH 196
Cdd:PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQ--RKlgiTFVFVTH 203
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
8-234 |
8.04e-31 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 117.64 E-value: 8.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGL 86
Cdd:PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAlSARAASRRVAS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VSHQSFLYDDLTARENLEF----YAGLYGVADPAGRA--EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLL 160
Cdd:PRK09536 82 VPQDTSLSFEFDVRQVVEMgrtpHRSRFDTWTETDRAavERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 161 LLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRlVFLAGRDE--VDADGFEDTY 234
Cdd:PRK09536 162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGR-VRAAGPPAdvLTADTLRAAF 236
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
10-231 |
1.11e-30 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 113.62 E-value: 1.11e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILA--TLLRPTSGTVRIRGFD-LEDDPEAfRARLGL 86
Cdd:COG0396 1 LEIKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMghPKYEVTSGSILLDGEDiLELSPDE-RARAGI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 ------------VSHQSFLYDDLTARENLEFYAglygvADPAGRAEELLRQVDL---YDRRDSPVGaFSRGMQQRLTIAR 151
Cdd:COG0396 80 flafqypveipgVSVSNFLRTALNARRGEELSA-----REFLKLLKEKMKELGLdedFLDRYVNEG-FSGGEKKRNEILQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 152 ALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLR--RGIEsATRLGILARGRLVFLAGR---DEVD 226
Cdd:COG0396 154 MLLLEPKLAILDETDSGLDIDALRIVAEGVNKLRSPDRGILIITHYQRilDYIK-PDFVHVLVDGRIVKSGGKelaLELE 232
|
....*
gi 644489132 227 ADGFE 231
Cdd:COG0396 233 EEGYD 237
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
10-198 |
1.37e-30 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 118.16 E-value: 1.37e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGV-EALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLV 87
Cdd:TIGR02857 322 LEFSGVSVAYPGRrPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADaDADSWRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 SHQSFLYDDlTARENLEFY------AGLYGVADPAGrAEELLRqvDLYDRRDSPVG----AFSRGMQQRLTIARALVNDP 157
Cdd:TIGR02857 402 PQHPFLFAG-TIAENIRLArpdasdAEIREALERAG-LDEFVA--ALPQGLDTPIGeggaGLSGGQAQRLALARAFLRDA 477
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 644489132 158 DLLLLDEPYTGLDEHAASVLRERLRALHdRRRTIVMVTHNL 198
Cdd:TIGR02857 478 PLLLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTHRL 517
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
10-217 |
2.10e-30 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 113.29 E-value: 2.10e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVS 88
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAwSPWELARRRAVLP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 89 HQSFLYDDLTARENLEFyaGLYGVADPAGRAEELLRQ----VDLYDRRDSPVGAFSRGMQQRLTIARALV-------NDP 157
Cdd:COG4559 82 QHSSLAFPFTVEEVVAL--GRAPHGSSAAQDRQIVREalalVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlwepvdGGP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644489132 158 DLLLLDEPYTGLD-EHAASVLReRLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:COG4559 160 RWLFLDEPTSALDlAHQHAVLR-LARQLARRGGGVVAVLHDLNLAAQYADRILLLHQGRLV 219
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
40-217 |
7.73e-30 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 113.36 E-value: 7.73e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 40 LFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPeAFRARLGLVSHQSFLYDDLTARENLEFYAGLYGV--ADPAG 117
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVprAEIKP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 118 RAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTH 196
Cdd:TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGiTFVFVTH 159
|
170 180
....*....|....*....|.
gi 644489132 197 NLRRGIESATRLGILARGRLV 217
Cdd:TIGR01187 160 DQEEAMTMSDRIAIMRKGKIA 180
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
25-214 |
1.16e-29 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 110.63 E-value: 1.16e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLeDDPEAFRarlgLVSHQSF-LYDDLTAREN- 102
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI-TEPGPDR----MVVFQNYsLLPWLTVRENi 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 103 -LEFYAGLYGVADPAGRA--EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRE 179
Cdd:TIGR01184 76 aLAVDRVLPDLSKSERRAivEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155
|
170 180 190
....*....|....*....|....*....|....*.
gi 644489132 180 RL-RALHDRRRTIVMVTHNLRRGIESATRLGILARG 214
Cdd:TIGR01184 156 ELmQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
10-217 |
1.18e-29 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 111.00 E-value: 1.18e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLeDDPEAFRARLGLVSH 89
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI-DTARSLSQQKGLIRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 ---------QSF-LYDDLTAREN-LEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVND 156
Cdd:PRK11264 83 lrqhvgfvfQNFnLFPHRTVLENiIEGPVIVKGEpkEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644489132 157 PDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV 223
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
24-218 |
1.42e-29 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 108.94 E-value: 1.42e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSHQSFLYDDlTARENL 103
Cdd:cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDT-TLRNNL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 efyaglygvadpaGRAeellrqvdlydrrdspvgaFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD-EHAASVLRERLR 182
Cdd:cd03247 96 -------------GRR-------------------FSGGERQRLALARILLQDAPIVLLDEPTVGLDpITERQLLSLIFE 143
|
170 180 190
....*....|....*....|....*....|....*.
gi 644489132 183 ALHDrrRTIVMVTHNLrRGIESATRLGILARGRLVF 218
Cdd:cd03247 144 VLKD--KTLIWITHHL-TGIEHMDKILFLENGKIIM 176
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
7-217 |
1.56e-29 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 111.08 E-value: 1.56e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRG-----FDLEDDPEAFR 81
Cdd:TIGR02323 1 KPLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMrsgaeLELYQLSEAER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ARL-----GLVsHQS---FLYDDLTAREN-----LEFYAGLYGvaDPAGRAEELLRQVDL-YDRRDSPVGAFSRGMQQRL 147
Cdd:TIGR02323 81 RRLmrtewGFV-HQNprdGLRMRVSAGANigerlMAIGARHYG--NIRATAQDWLEEVEIdPTRIDDLPRAFSGGMQQRL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644489132 148 TIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRAL-HDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLvRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
20-197 |
3.03e-29 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 108.28 E-value: 3.03e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE---AFRARLGLV---SHQSFL 93
Cdd:TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKgllERRQRVGLVfqdPDDQLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 94 YDDLTarENLEF---YAGLYGvADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD 170
Cdd:TIGR01166 83 AADVD--QDVAFgplNLGLSE-AEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159
|
170 180
....*....|....*....|....*..
gi 644489132 171 EHAASVLRERLRALHDRRRTIVMVTHN 197
Cdd:TIGR01166 160 PAGREQMLAILRRLRAEGMTVVISTHD 186
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
21-217 |
3.74e-29 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 109.63 E-value: 3.74e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTA 99
Cdd:cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvTLDSLRRAIGVVPQDTVLFND-TI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLEfYAGL-------YGVADPAGRAEELLRQVDLYdrrDSPVGA----FSRGMQQRLTIARALVNDPDLLLLDEPYTG 168
Cdd:cd03253 92 GYNIR-YGRPdatdeevIEAAKAAQIHDKIMRFPDGY---DTIVGErglkLSGGEKQRVAIARAILKNPPILLLDEATSA 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 644489132 169 LDEHAASVLRERLRALHdRRRTIVMVTHNLRRgIESATRLGILARGRLV 217
Cdd:cd03253 168 LDTHTEREIQAALRDVS-KGRTTIVIAHRLST-IVNADKIIVLKDGRIV 214
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
21-231 |
4.06e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 110.21 E-value: 4.06e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAF-RARLGLV----SHQSF--- 92
Cdd:PRK13647 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWvRSKVGLVfqdpDDQVFsst 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 93 LYDDLT-ARENLEFyaglyGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDE 171
Cdd:PRK13647 97 VWDDVAfGPVNMGL-----DKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 172 HAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV------FLAGRDEVDADGFE 231
Cdd:PRK13647 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLaegdksLLTDEDIVEQAGLR 237
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-170 |
5.22e-29 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 114.45 E-value: 5.22e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLRKAFGGVEALRGVSFTLDEGE---FLclfGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE 78
Cdd:NF033858 259 ADDDDEPAIEARGLTMRFGDFTAVDHVSFRIRRGEifgFL---GSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDI 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 79 AFRARLGLVShQSF-LYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVN 155
Cdd:NF033858 336 ATRRRVGYMS-QAFsLYGELTVRQNLELHARLFHLpaAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIH 414
|
170
....*....|....*
gi 644489132 156 DPDLLLLDEPYTGLD 170
Cdd:NF033858 415 KPELLILDEPTSGVD 429
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
10-225 |
5.27e-29 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 109.72 E-value: 5.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVS 88
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMlSSRQLARRLALLP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 89 HQSFLYDDLTARENLEF----YAGLYG---VADPA--GRAEELLRQVDLYDRRdspVGAFSRGMQQRLTIARALVNDPDL 159
Cdd:PRK11231 83 QHHLTPEGITVRELVAYgrspWLSLWGrlsAEDNArvNQAMEQTRINHLADRR---LTDLSGGQRQRAFLAMVLAQDTPV 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 160 LLLDEPYTGLD-EHAASVLReRLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:PRK11231 160 VLLDEPTTYLDiNHQVELMR-LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
8-217 |
5.56e-29 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 109.48 E-value: 5.56e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGL 86
Cdd:PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADwSPAELARRRAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VSHQSFLYDDLTARENLEFyaGLYGVADPAGRAEEL----LRQVDLYDRRDSPVGAFSRGMQQRLTIARALV------ND 156
Cdd:PRK13548 81 LPQHSSLSFPFTVEEVVAM--GRAPHGLSRAEDDALvaaaLAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwepdGP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644489132 157 PDLLLLDEPYTGLD-EHAASVLReRLRAL-HDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK13548 159 PRWLLLDEPTSALDlAHQHHVLR-LARQLaHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
22-219 |
7.95e-29 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 108.51 E-value: 7.95e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 22 VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRP---TSGTVRIRGfdLEDDPEAFRARLGLVSHQSFLYDDLT 98
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNG--QPRKPDQFQKCVAYVRQDDILLPGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLEFYAGLYGVADPAGR------AEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEH 172
Cdd:cd03234 98 VRETLTYTAILRLPRKSSDAirkkrvEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 644489132 173 AASVLRERLRALHDRRRTIVMVTHNLRRGI-ESATRLGILARGRLVFL 219
Cdd:cd03234 178 TALNLVSTLSQLARRNRIVILTIHQPRSDLfRLFDRILLLSSGEIVYS 225
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
7-217 |
8.98e-29 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 112.96 E-value: 8.98e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRG--FDLEDDPEAFRARL 84
Cdd:PRK09700 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNinYNKLDHKLAAQLGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVSHQSFLYDDLTARENLefYAG------LYGV-----ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARAL 153
Cdd:PRK09700 83 GIIYQELSVIDELTVLENL--YIGrhltkkVCGVniidwREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 154 VNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
10-214 |
1.07e-28 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 108.63 E-value: 1.07e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEdDPEAFRarlGLVSH 89
Cdd:PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE-GPGAER---GVVFQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFYAGLYGVADPA--GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQrlEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 644489132 168 GLDEHAASVLRE-RLRALHDRRRTIVMVTHNLRRGIESATRLGILARG 214
Cdd:PRK11248 158 ALDAFTREQMQTlLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
11-196 |
3.28e-28 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 107.48 E-value: 3.28e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 11 TVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARlglvsHQ 90
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAK-----RL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 91 SFLYDD------LTARENLEFyaGLY----GVADPAGRA--EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPD 158
Cdd:COG4604 78 AILRQEnhinsrLTVRELVAF--GRFpyskGRLTAEDREiiDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTD 155
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 644489132 159 LLLLDEPYTGLD-EHAASVLReRLRAL-HDRRRTIVMVTH 196
Cdd:COG4604 156 YVLLDEPLNNLDmKHSVQMMK-LLRRLaDELGKTVVIVLH 194
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
21-217 |
4.74e-28 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 106.47 E-value: 4.74e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYdDLTA 99
Cdd:cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlNLRWLRSQIGLVSQEPVLF-DGTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLefyagLYGVADP-AGRAEELLRQ-------VDLYDRRDSPVGA----FSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:cd03249 94 AENI-----RYGKPDAtDEEVEEAAKKanihdfiMSLPDGYDTLVGErgsqLSGGQKQRIAIARALLRNPKILLLDEATS 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 168 GLDEHAASVLRERLRALHdRRRTIVMVTHNLRRgIESATRLGILARGRLV 217
Cdd:cd03249 169 ALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-IRNADLIAVLQNGQVV 216
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
10-226 |
5.54e-28 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 105.30 E-value: 5.54e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATL--LRPTSGTVRIRGFDLEDDPEAFRARLGLv 87
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPPEERARLGI- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 shqsflyddltarenleFYAGLYGVADPAGRAEELLRQVDlydrrdspVGaFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:cd03217 80 -----------------FLAFQYPPEIPGVKNADFLRYVN--------EG-FSGGEKKRNEILQLLLLEPDLAILDEPDS 133
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644489132 168 GLDEHAASVLRERLRALHDRRRTIVMVTHNLR--RGIEsATRLGILARGRLVFLAGRDEVD 226
Cdd:cd03217 134 GLDIDALRLVAEVINKLREEGKSVLIITHYQRllDYIK-PDRVHVLYDGRIVKSGDKELAL 193
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-198 |
6.11e-28 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 110.91 E-value: 6.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLRKAF-GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE-A 79
Cdd:TIGR02868 327 AVGLGKPTLELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQdE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 80 FRARLGLVSHQSFLYDDlTARENLEFYAGlyGVADPAgrAEELLRQV-------DLYDRRDSPVG----AFSRGMQQRLT 148
Cdd:TIGR02868 407 VRRRVSVCAQDAHLFDT-TVRENLRLARP--DATDEE--LWAALERVgladwlrALPDGLDTVLGeggaRLSGGERQRLA 481
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 149 IARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALhDRRRTIVMVTHNL 198
Cdd:TIGR02868 482 LARALLADAPILLLDEPTEHLDAETADELLEDLLAA-LSGRTVVLITHHL 530
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
10-218 |
1.14e-27 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 105.61 E-value: 1.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGvEALRgVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRArLGLVSH 89
Cdd:COG3840 2 LRLDDLTYRYGD-FPLR-FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAERP-VSMLFQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTAREN--LEFYAGL-YGVADPAgRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:COG3840 79 ENNLFPHLTVAQNigLGLRPGLkLTAEQRA-QVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPF 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 167 TGLDehaaSVLRERLRAL-----HDRRRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:COG3840 158 SALD----PALRQEMLDLvdelcRERGLTVLMVTHDPEDAARIADRVLLVADGRIAA 210
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
11-197 |
1.18e-27 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 108.19 E-value: 1.18e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 11 TVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRArLGLVsHQ 90
Cdd:PRK11000 5 TLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG-VGMV-FQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 91 SF-LYDDLTARENLEFYAGLYGV--ADPAGRAE---ELLRQVDLYDRRDSpvgAFSRGMQQRLTIARALVNDPDLLLLDE 164
Cdd:PRK11000 83 SYaLYPHLSVAENMSFGLKLAGAkkEEINQRVNqvaEVLQLAHLLDRKPK---ALSGGQRQRVAIGRTLVAEPSVFLLDE 159
|
170 180 190
....*....|....*....|....*....|....*...
gi 644489132 165 PYTGLDehAAsvLRERLRA----LHDR-RRTIVMVTHN 197
Cdd:PRK11000 160 PLSNLD--AA--LRVQMRIeisrLHKRlGRTMIYVTHD 193
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
12-170 |
2.04e-27 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 109.83 E-value: 2.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDdpEAFRARL------- 84
Cdd:NF033858 4 LEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMAD--ARHRRAVcpriaym 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 --GLVSHqsfLYDDLTARENLEFYAGLYG--VADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLL 160
Cdd:NF033858 82 pqGLGKN---LYPTLSVFENLDFFGRLFGqdAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLL 158
|
170
....*....|
gi 644489132 161 LLDEPYTGLD 170
Cdd:NF033858 159 ILDEPTTGVD 168
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
21-217 |
2.04e-27 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 105.01 E-value: 2.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTA 99
Cdd:cd03251 14 GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGLVSQDVFLFND-TV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLefyagLYGVADpAGRAE--ELLRQV-------DLYDRRDSPVG----AFSRGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:cd03251 93 AENI-----AYGRPG-ATREEveEAARAAnahefimELPEGYDTVIGergvKLSGGQRQRIAIARALLKDPPILILDEAT 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 167 TGLDEHAASVLRERLRALHDRRRTIVmVTHNLRRgIESATRLGILARGRLV 217
Cdd:cd03251 167 SALDTESERLVQAALERLMKNRTTFV-IAHRLST-IENADRIVVLEDGKIV 215
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
7-217 |
2.29e-27 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 105.24 E-value: 2.29e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATL--LRP---TSGTVRIRGFDL---EDDPE 78
Cdd:PRK14239 3 EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndLNPevtITGSIVYNGHNIyspRTDTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 79 AFRARLGLVSHQSFLYDdLTARENLEFYAGLYGVADPA---GRAEELLRQVDLYDR-----RDSPVGaFSRGMQQRLTIA 150
Cdd:PRK14239 83 DLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQvldEAVEKSLKGASIWDEvkdrlHDSALG-LSGGQQQRVCIA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 151 RALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDrRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLI 226
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-228 |
5.99e-27 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 107.81 E-value: 5.99e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLR-KAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEA 79
Cdd:COG3845 250 PAEPGEVVLEVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGlSPRE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 80 FRA-----------RLGLVShqsflydDLTARENL---EFYAGLY---GVADPAGRAEELLRQVDLYDRR----DSPVGA 138
Cdd:COG3845 330 RRRlgvayipedrlGRGLVP-------DMSVAENLilgRYRRPPFsrgGFLDRKAIRAFAEELIEEFDVRtpgpDTPARS 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 139 FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:COG3845 403 LSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIVG 482
|
250
....*....|
gi 644489132 219 LAGRDEVDAD 228
Cdd:COG3845 483 EVPAAEATRE 492
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
3-225 |
9.45e-27 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 105.20 E-value: 9.45e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 3 ASAGEPFLTVEGLRKAF-----------GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGF 71
Cdd:COG4608 1 AAMAEPLLEVRDLKKHFpvrgglfgrtvGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 72 DL----EDDPEAFRARLGLVSHQSF--LYDDLTARENLEF---YAGLYGVADPAGRAEELLRQVDL----YDRRdsPvGA 138
Cdd:COG4608 81 DItglsGRELRPLRRRMQMVFQDPYasLNPRMTVGDIIAEplrIHGLASKAERRERVAELLELVGLrpehADRY--P-HE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 139 FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDehaASV------LRERLRalhdRRR--TIVMVTHNLR--RGIesATRL 208
Cdd:COG4608 158 FSGGQRQRIGIARALALNPKLIVCDEPVSALD---VSIqaqvlnLLEDLQ----DELglTYLFISHDLSvvRHI--SDRV 228
|
250
....*....|....*..
gi 644489132 209 GILARGRLVFLAGRDEV 225
Cdd:COG4608 229 AVMYLGKIVEIAPRDEL 245
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-216 |
1.20e-26 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 101.35 E-value: 1.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 6 GEPFLTVEGLRKAfggvEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDP--EAFRAR 83
Cdd:cd03215 1 GEPVLEVRGLSVK----GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSprDAIRAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 84 LGLVS---HQSFLYDDLTARENLEFYAGLYGvadpagraeellrqvdlydrrdspvgafsrGMQQRLTIARALVNDPDLL 160
Cdd:cd03215 77 IAYVPedrKREGLVLDLSVAENIALSSLLSG------------------------------GNQQKVVLARWLARDPRVL 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 161 LLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:cd03215 127 ILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
8-218 |
1.50e-26 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 102.65 E-value: 1.50e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEA--FRARLG 85
Cdd:PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAkiMREAVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 LVSHQSFLYDDLTARENLE---FYAGLYGVADPAGRAEELLRQvdLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLL 162
Cdd:PRK11614 84 IVPEGRRVFSRMTVEENLAmggFFAERDQFQERIKWVYELFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 163 DEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:PRK11614 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL 217
|
|
| ABC_ATP_DarD |
NF038007 |
darobactin export ABC transporter ATP-binding protein; |
24-196 |
1.59e-26 |
|
darobactin export ABC transporter ATP-binding protein;
Pssm-ID: 411600 [Multi-domain] Cd Length: 218 Bit Score: 102.10 E-value: 1.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED----DPEAFRARLGLVSHQSF-LYDDLT 98
Cdd:NF038007 20 VLNHLNFSVEKGDFVSIMGPSGSGKSTLLNIIGMFDSLDSGSLTLAGKEVTNlsysQKIILRRELIGYIFQSFnLIPHLS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLEFYAGLYGVADPAgRAEELLRQVDLYD---RRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAAS 175
Cdd:NF038007 100 IFDNVALPLKYRGVAKKE-RIERVNQVLNLFGidnRRNHKPMQLSGGQQQRVAIARAMVSNPALLLADEPTGNLDSKNAR 178
|
170 180
....*....|....*....|.
gi 644489132 176 VLRERLRALHDRRRTIVMVTH 196
Cdd:NF038007 179 AVLQQLKYINQKGTTIIMVTH 199
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
10-214 |
2.32e-26 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 104.78 E-value: 2.32e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEdDPEAFRARLGLVSH 89
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS-RLHARDRKVGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSFLYDDLTARENLEFyaGLY--------GVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLL 161
Cdd:PRK10851 82 HYALFRHMTVFDNIAF--GLTvlprrerpNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 644489132 162 LDEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARG 214
Cdd:PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEELKfTSVFVTHDQEEAMEVADRVVVMSQG 213
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
23-199 |
2.32e-26 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 102.20 E-value: 2.32e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 23 EALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRA-----RLGLVSHQSFLYDDL 97
Cdd:PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAelrnqKLGFIYQFHHLLPDF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 98 TARENLEFYAgLYGVADPA---GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAA 174
Cdd:PRK11629 103 TALENVAMPL-LIGKKKPAeinSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
170 180
....*....|....*....|....*.
gi 644489132 175 SVLRERLRALHDRRRT-IVMVTHNLR 199
Cdd:PRK11629 182 DSIFQLLGELNRLQGTaFLVVTHDLQ 207
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
28-217 |
3.05e-26 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 104.41 E-value: 3.05e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 28 VSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDD-------PEafRARLGLVSHQSFLYDDLTAR 100
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSargiflpPH--RRRIGYVFQEARLFPHLSVR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLefyagLYGV--ADPAGRAEELLRQVD------LYDRRdspVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEH 172
Cdd:COG4148 96 GNL-----LYGRkrAPRAERRISFDEVVEllgighLLDRR---PATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLA 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 644489132 173 AASVLRERLRALHDRRRT-IVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:COG4148 168 RKAEILPYLERLRDELDIpILYVSHSLDEVARLADHVVLLEQGRVV 213
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
21-217 |
3.08e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 102.85 E-value: 3.08e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEA---FRARLGLVSHQSflyDDL 97
Cdd:PRK13639 14 GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSlleVRKTVGIVFQNP---DDQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 98 ----TARENLEFYAGLYGVA--DPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDE 171
Cdd:PRK13639 91 lfapTVEEDVAFGPLNLGLSkeEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDP 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 644489132 172 HAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK13639 171 MGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII 216
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
25-237 |
5.73e-26 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 105.51 E-value: 5.73e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRP---TSGTVRIRGFDLedDPEAFRARLGLVSHQSFLYDDLTARE 101
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMPI--DAKEMRAISAYVQQDDLFIPTLTVRE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 102 NLEFYAGLYGVADPAG-----RAEELLRQVDLYDRRDSPVGA------FSRGMQQRLTIARALVNDPDLLLLDEPYTGLD 170
Cdd:TIGR00955 119 HLMFQAHLRMPRRVTKkekreRVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 171 EHAASVLRERLRALHDRRRTIVMVTHNLRRGI-ESATRLGILARGRLVFLaGRDEVDADGFEDTYFRC 237
Cdd:TIGR00955 199 SFMAYSVVQVLKGLAQKGKTIICTIHQPSSELfELFDKIILMAEGRVAYL-GSPDQAVPFFSDLGHPC 265
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
25-225 |
6.97e-26 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 101.07 E-value: 6.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLrPTSGTVRIRGFDLEDDP--EAFRARLGLVSHQS-------FLYD 95
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSaaELARHRAYLSQQQSppfampvFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 96 DLtarenleFYAGLYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALV-----NDPD--LLLLDEPYTG 168
Cdd:COG4138 91 AL-------HQPAGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLqvwptINPEgqLLLLDEPMNS 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 169 LDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:COG4138 164 LDVAQQAALDRLLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEV 220
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
10-232 |
8.64e-26 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 100.80 E-value: 8.64e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATllRP----TSGTVRIRGFDLEDDPEAFRARLG 85
Cdd:TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPsyevTSGTILFKGQDLLELEPDERARAG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 L------------VSHQSFLYDDLTAR--ENLEFYAGLYGVADPAGRAEELLRQVDLYDRRDSPVGaFSRGMQQRLTIAR 151
Cdd:TIGR01978 79 LflafqypeeipgVSNLEFLRSALNARrsARGEEPLDLLDFEKLLKEKLALLDMDEEFLNRSVNEG-FSGGEKKRNEILQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 152 ALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRG--IEsATRLGILARGRLVFLAGRD---EVD 226
Cdd:TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLnyIK-PDYVHVLLDGRIVKSGDVElakELE 236
|
....*.
gi 644489132 227 ADGFED 232
Cdd:TIGR01978 237 AKGYDW 242
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
24-217 |
8.74e-26 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 104.91 E-value: 8.74e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE-AFRARLGLVSHQSFLYDDlTAREN 102
Cdd:PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEaALRQAISVVSQRVHLFSA-TLRDN 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 103 LEFyaglygvADPAGRAEEL---LRQVDLYDRRDSPVG----------AFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:PRK11160 434 LLL-------AAPNASDEALievLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRLGIARALLHDAPLLLLDEPTEGL 506
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 170 DehaASVLRERLRAL--HDRRRTIVMVTHNLrRGIESATRLGILARGRLV 217
Cdd:PRK11160 507 D---AETERQILELLaeHAQNKTVLMITHRL-TGLEQFDRICVMDNGQII 552
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
7-198 |
1.22e-25 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 104.24 E-value: 1.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLrPT---SGTVRIRGFDLE----DDPEa 79
Cdd:PRK13549 3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHgtyEGEIIFEGEELQasniRDTE- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 80 fraRLGLV-SHQSF-LYDDLTARENL----EFYAGlyGVADPAG---RAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIA 150
Cdd:PRK13549 81 ---RAGIAiIHQELaLVKELSVLENIflgnEITPG--GIMDYDAmylRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIA 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 644489132 151 RALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL 203
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
10-217 |
1.62e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 100.37 E-value: 1.62e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATL--LRPTSgtvRIRGFDLEDDPEAF------- 80
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLieLYPEA---RVSGEVYLDGQDIFkmdviel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 81 RARLGLVSHQSFLYDDLTARENLEFYAGLYGVADPAGRAEELLRQV--------DLYDRRDSPVGAFSRGMQQRLTIARA 152
Cdd:PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWAlekaqlwdEVKDRLDAPAGKLSGGQQQRLCIARA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 153 LVNDPDLLLLDEPYTGLDEHAASVLRERLRALhDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIV 224
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
24-236 |
2.75e-25 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 102.42 E-value: 2.75e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEA-----FRARLGLVSHQSFLYDDLT 98
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAelrevRRKKIAMVFQSFALMPHMT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLEFYAGLYGVADPAGRAEEL--LRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASV 176
Cdd:PRK10070 123 VLDNTAFGMELAGINAEERREKALdaLRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 177 LRERLRALHDR-RRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV---DADGFEDTYFR 236
Cdd:PRK10070 203 MQDELVKLQAKhQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIlnnPANDYVRTFFR 266
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
25-196 |
5.60e-25 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 97.71 E-value: 5.60e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSHQSFLYDDLTAREN-- 102
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENcl 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 103 --LEFYAGLYGVadpagraEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRER 180
Cdd:PRK13540 97 ydIHFSPGAVGI-------TELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITK 169
|
170
....*....|....*.
gi 644489132 181 LRALHDRRRTIVMVTH 196
Cdd:PRK13540 170 IQEHRAKGGAVLLTSH 185
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
10-228 |
7.30e-25 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 98.43 E-value: 7.30e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLvsh 89
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 qSFLYDDLTARENLEFYAGLYGVAD---------PAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLL 160
Cdd:PRK10895 81 -GYLPQEASIFRRLSVYDNLMAVLQirddlsaeqREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 161 LLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
9-197 |
1.05e-24 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 100.18 E-value: 1.05e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 9 FLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDdpEAFRARLGLVS 88
Cdd:PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH--RSIQQRDICMV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 89 HQSF-LYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEP 165
Cdd:PRK11432 84 FQSYaLFPHMSLGENVGYGLKMLGVpkEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163
|
170 180 190
....*....|....*....|....*....|...
gi 644489132 166 YTGLDEHAASVLRERLRALHDRRR-TIVMVTHN 197
Cdd:PRK11432 164 LSNLDANLRRSMREKIRELQQQFNiTSLYVTHD 196
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
23-225 |
1.12e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 98.97 E-value: 1.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 23 EALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDP---EAFRARLGLV----SHQSFlyd 95
Cdd:PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKvklSDIRKKVGLVfqypEYQLF--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 96 DLTARENLEFYAGLYGVADpagraEELLRQV------------DLYDRrdSPVgAFSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:PRK13637 98 EETIEKDIAFGPINLGLSE-----EEIENRVkramnivgldyeDYKDK--SPF-ELSGGQKRRVAIAGVVAMEPKILILD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644489132 164 EPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNmTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
10-198 |
1.23e-24 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 98.12 E-value: 1.23e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL--------------ED 75
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTInlvrdkdgqlkvadKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 76 DPEAFRARLGLVSHQSFLYDDLTAREN-LEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDS--PVgAFSRGMQQRLTIA 150
Cdd:PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENvMEAPIQVLGLskQEARERAVKYLAKVGIDERAQGkyPV-HLSGGQQQRVSIA 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 644489132 151 RALVNDPDLLLLDEPYTGLD-EHAASVLReRLRALHDRRRTIVMVTHNL 198
Cdd:PRK10619 165 RALAMEPEVLLFDEPTSALDpELVGEVLR-IMQQLAEEGKTMVVVTHEM 212
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
25-225 |
2.94e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 97.04 E-value: 2.94e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-------EDDPEAFRARLGLVSHQSFLYDDL 97
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLyfgkdifQIDAIKLRKEVGMVFQQPNPFPHL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 98 TARENLEFYAGLYGVADP---AGRAEELLRQVDL----YDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD 170
Cdd:PRK14246 106 SIYDNIAYPLKSHGIKEKreiKKIVEECLRKVGLwkevYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 171 EHAASVLrERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:PRK14246 186 IVNSQAI-EKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
8-197 |
3.50e-24 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 96.32 E-value: 3.50e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGL 86
Cdd:PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTlKPEIYRQQVSY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VSHQSFLYDDlTARENLEFYAGLYGVA-DPAGRAEELLRqVDLYDRR-DSPVGAFSRGMQQRLTIARALVNDPDLLLLDE 164
Cdd:PRK10247 86 CAQTPTLFGD-TVYDNLIFPWQIRNQQpDPAIFLDDLER-FALPDTIlTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163
|
170 180 190
....*....|....*....|....*....|....
gi 644489132 165 PYTGLDEHAASVLRERL-RALHDRRRTIVMVTHN 197
Cdd:PRK10247 164 ITSALDESNKHNVNEIIhRYVREQNIAVLWVTHD 197
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
20-217 |
3.89e-24 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 96.14 E-value: 3.89e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEA-FRARLGLVSHQSFLYDDlT 98
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKsLRSMIGVVLQDTFLFSG-T 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLEfYAGLYGVADPAGRAEELLRQVDL-------YDRRDSPVGA-FSRGMQQRLTIARALVNDPDLLLLDEPYTGLD 170
Cdd:cd03254 93 IMENIR-LGRPNATDEEVIEAAKEAGAHDFimklpngYDTVLGENGGnLSQGERQLLAIARAMLRDPKILILDEATSNID 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 644489132 171 EHAASVLRERLRALHDrRRTIVMVTHNLRRgIESATRLGILARGRLV 217
Cdd:cd03254 172 TETEKLIQEALEKLMK-GRTSIIIAHRLST-IKNADKILVLDDGKII 216
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
21-224 |
4.43e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 96.98 E-value: 4.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDP--EAFRARLGLV-SHQSFLYDDL 97
Cdd:PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSklQGIRKLVGIVfQNPETQFVGR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 98 TARENLEFyaGLYGVADPA----GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHA 173
Cdd:PRK13644 94 TVEEDLAF--GPENLCLPPieirKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 174 ASVLRERLRALHDRRRTIVMVTHNLRRgIESATRLGILARGRLVfLAGRDE 224
Cdd:PRK13644 172 GIAVLERIKKLHEKGKTIVYITHNLEE-LHDADRIIVMDRGKIV-LEGEPE 220
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
11-217 |
5.17e-24 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 97.95 E-value: 5.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 11 TVEGLRKAFGG----VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL----EDDPEAFRA 82
Cdd:PRK11153 3 ELKNISKVFPQggrtIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLtalsEKELRKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 83 RLGLVsHQSF-LYDDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDL 159
Cdd:PRK11153 83 QIGMI-FQHFnLLSSRTVFDNVALPLELAGTpkAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 160 LLLDEPYTGLD-EHAASVLrERLRALHdrRR---TIVMVTHNLR--RGIesATRLGILARGRLV 217
Cdd:PRK11153 162 LLCDEATSALDpATTRSIL-ELLKDIN--RElglTIVLITHEMDvvKRI--CDRVAVIDAGRLV 220
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
21-217 |
6.84e-24 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 99.41 E-value: 6.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTA 99
Cdd:TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADyTLASLRRQVALVSQDVVLFND-TI 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLEfyaglYGVADPAGRAEELLRQVDLY---------DRRDSPVGA----FSRGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:TIGR02203 423 ANNIA-----YGRTEQADRAEIERALAAAYaqdfvdklpLGLDTPIGEngvlLSGGQRQRLAIARALLKDAPILILDEAT 497
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 167 TGLDEHAASVLRERLRALHDRRRTIVmVTHNLRRgIESATRLGILARGRLV 217
Cdd:TIGR02203 498 SALDNESERLVQAALERLMQGRTTLV-IAHRLST-IEKADRIVVMDDGRIV 546
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
21-230 |
6.90e-24 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 95.63 E-value: 6.90e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTA 99
Cdd:cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQVGVVLQENVLFNR-SI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLefyaglyGVADPAGRAEELLRQVDLYDRRD----SPVG----------AFSRGMQQRLTIARALVNDPDLLLLDEP 165
Cdd:cd03252 93 RDNI-------ALADPGMSMERVIEAAKLAGAHDfiseLPEGydtivgeqgaGLSGGQRQRIAIARALIHNPRILIFDEA 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 166 YTGLDEHAASVLRERLRALHDrRRTIVMVTHNLrRGIESATRLGILARGRLVFLAGRDE-VDADGF 230
Cdd:cd03252 166 TSALDYESEHAIMRNMHDICA-GRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDElLAENGL 229
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-221 |
8.75e-24 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 98.98 E-value: 8.75e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 6 GEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIrgfdleddpeAFRARLG 85
Cdd:COG0488 312 GKKVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKL----------GETVKIG 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 LVS-HQSFLYDDLTARENLEfyaglyGVADpaGRAEELLRQVdL------YDRRDSPVGAFSRGMQQRLTIARALVNDPD 158
Cdd:COG0488 382 YFDqHQEELDPDKTVLDELR------DGAP--GGTEQEVRGY-LgrflfsGDDAFKPVGVLSGGEKARLALAKLLLSPPN 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 159 LLLLDEPYTGLDEHAASVLRErlrALHDRRRTIVMVTHNlRRGIES-ATRLGILARGRLVFLAG 221
Cdd:COG0488 453 VLLLDEPTNHLDIETLEALEE---ALDDFPGTVLLVSHD-RYFLDRvATRILEFEDGGVREYPG 512
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
7-199 |
1.41e-23 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 94.46 E-value: 1.41e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEA----LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRA 82
Cdd:PRK10584 4 ENIVEVHHLKKSVGQGEHelsiLTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 83 RL-----GLVsHQSF-LYDDLTARENLEFYAGLYGVADPAGR--AEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALV 154
Cdd:PRK10584 84 KLrakhvGFV-FQSFmLIPTLNALENVELPALLRGESSRQSRngAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 644489132 155 NDPDLLLLDEPYTGLDEHAASVLRERLRAL-HDRRRTIVMVTHNLR 199
Cdd:PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLnREHGTTLILVTHDLQ 208
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
4-208 |
1.80e-23 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 94.15 E-value: 1.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 4 SAGEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdlEDDPEAFRAR 83
Cdd:PRK13543 6 HTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG---KTATRGDRSR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 84 -LGLVSHQSFLYDDLTARENLEFYAGLYGvADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLL 162
Cdd:PRK13543 83 fMAYLGHLPGLKADLSTLENLHFLCGLHG-RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 644489132 163 DEPYTGLDEHAASVLRERLRA-LHDRRRTIVmVTHNLRRGIESATRL 208
Cdd:PRK13543 162 DEPYANLDLEGITLVNRMISAhLRGGGAALV-TTHGAYAAPPVRTRM 207
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
29-218 |
1.91e-23 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 94.26 E-value: 1.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 29 SFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRArLGLVSHQSFLYDDLTAREN--LEFY 106
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP-VSMLFQENNLFSHLTVAQNigLGLN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 107 AGLYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDehaaSVLRERLRAL-- 184
Cdd:PRK10771 98 PGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRQEMLTLvs 173
|
170 180 190
....*....|....*....|....*....|....*..
gi 644489132 185 ---HDRRRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:PRK10771 174 qvcQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW 210
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-217 |
2.37e-23 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 97.78 E-value: 2.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLRKAfggvEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRG--FDLEDDPEA 79
Cdd:COG1129 249 AAAPGEVVLEVEGLSVG----GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGkpVRIRSPRDA 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 80 FRARLGLVS---HQSFLYDDLTAREN-----LEFYAGLyGVADPA---GRAEELLRQVDL-YDRRDSPVGAFSRGMQQRL 147
Cdd:COG1129 325 IRAGIAYVPedrKGEGLVLDLSIRENitlasLDRLSRG-GLLDRRrerALAEEYIKRLRIkTPSPEQPVGNLSGGNQQKV 403
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 148 TIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:COG1129 404 VLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAVIVISSELPELLGLSDRILVMREGRIV 473
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
25-214 |
2.58e-23 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 93.08 E-value: 2.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILAtlLRPTSGTVR----IRGFDLeddPEAFRARLGLVSHQSFLYDDLTAR 100
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLA--GRKTAGVITgeilINGRPL---DKNFQRSTGYVEQQDVHSPNLTVR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLEFYAglygvadpagraeeLLRQVDLYDRRdspvgafsrgmqqRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRER 180
Cdd:cd03232 98 EALRFSA--------------LLRGLSVEQRK-------------RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF 150
|
170 180 190
....*....|....*....|....*....|....*
gi 644489132 181 LRALHDRRRTIVMVTHNLRRGI-ESATRLGILARG 214
Cdd:cd03232 151 LKKLADSGQAILCTIHQPSASIfEKFDRLLLLKRG 185
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
24-217 |
3.95e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 95.15 E-value: 3.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEA------------------------ 79
Cdd:PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTkekekvleklviqktrfkkikkik 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 80 -FRARLGLV----SHQSFlydDLTARENLEFYAGLYGV--ADPAGRAEELLRQVDL---YDRRdSPVGaFSRGMQQRLTI 149
Cdd:PRK13651 102 eIRRRVGVVfqfaEYQLF---EQTIEKDIIFGPVSMGVskEEAKKRAAKYIELVGLdesYLQR-SPFE-LSGGQKRRVAL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 150 ARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK13651 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII 244
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
29-217 |
4.22e-23 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 92.94 E-value: 4.22e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 29 SFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRArLGLVSHQSFLYDDLTAREN--LEFY 106
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP-VSMLFQENNLFAHLTVEQNvgLGLS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 107 AGLYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDehaaSVLRERLRAL-- 184
Cdd:cd03298 97 PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD----PALRAEMLDLvl 172
|
170 180 190
....*....|....*....|....*....|....*.
gi 644489132 185 ---HDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:cd03298 173 dlhAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
5-217 |
6.29e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 94.04 E-value: 6.29e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 5 AGEPFltvEGlrkafggvEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE-----A 79
Cdd:PRK13649 14 AGTPF---EG--------RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKnkdikQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 80 FRARLGLVSH--QSFLYDDlTARENLEFYAGLYGVA--DPAGRAEELLRQV----DLYDRrdSPVgAFSRGMQQRLTIAR 151
Cdd:PRK13649 83 IRKKVGLVFQfpESQLFEE-TVLKDVAFGPQNFGVSqeEAEALAREKLALVgiseSLFEK--NPF-ELSGGQMRRVAIAG 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 152 ALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
10-198 |
6.66e-23 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 96.43 E-value: 6.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATlLRPT---SGTVRIRGFDLE----DDPEafRA 82
Cdd:TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYWSGSPLKasniRDTE--RA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 83 RLGLVSHQSFLYDDLTAREN------LEFYAGLYGVADPAGRAEELLRQVDLYDRRDS-PVGAFSRGMQQRLTIARALVN 155
Cdd:TIGR02633 79 GIVIIHQELTLVPELSVAENiflgneITLPGGRMAYNAMYLRAKNLLRELQLDADNVTrPVGDYGGGQQQLVEIAKALNK 158
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 644489132 156 DPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL 201
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
25-228 |
8.19e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 93.74 E-value: 8.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDP-----EAFRARLGLVSH--QSFLYDDl 97
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETgnknlKKLRKKVSLVFQfpEAQLFEN- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 98 TARENLEFYAGLYGVADPAGR--AEELLRQVDLYDR--RDSPVgAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD--- 170
Cdd:PRK13641 102 TVLKDVEFGPKNFGFSEDEAKekALKWLKKVGLSEDliSKSPF-ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDpeg 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 171 -EHAASVLRERLRALHdrrrTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:PRK13641 181 rKEMMQLFKDYQKAGH----TVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
28-225 |
1.02e-22 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 92.69 E-value: 1.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 28 VSFTLDEGEFLCLFGPNGAGKSTLLKILATLLrPTSGTVRIRGFDLEDDP--EAFRARLGLVSHQS-------FLYDDLT 98
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSaaELARHRAYLSQQQTppfampvFQYLTLH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLEfyaglygVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQR-------LTIARALVNDPDLLLLDEPYTGLDE 171
Cdd:PRK03695 94 QPDKTR-------TEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRvrlaavvLQVWPDINPAGQLLLLDEPMNSLDV 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 644489132 172 HAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:PRK03695 167 AQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
14-217 |
1.64e-22 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 92.83 E-value: 1.64e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 14 GLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLE----DDPEAFRARLGLVsh 89
Cdd:PRK10419 17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAklnrAQRKAFRRDIQMV-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 qsfLYDDLTA-----------RENLEFYAGLyGVADPAGRAEELLRQVDL----YDRRDspvGAFSRGMQQRLTIARALV 154
Cdd:PRK10419 95 ---FQDSISAvnprktvreiiREPLRHLLSL-DKAERLARASEMLRAVDLddsvLDKRP---PQLSGGQLQRVCLARALA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 155 NDPDLLLLDEPYTGLDEH-AASVLRErLRALHDRRRT-IVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK10419 168 VEPKLLILDEAVSNLDLVlQAGVIRL-LKKLQQQFGTaCLFITHDLRLVERFCQRVMVMDNGQIV 231
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
10-234 |
2.13e-22 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 92.38 E-value: 2.13e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLR----PTS-----GTVRIRGFDLEDDPEAF 80
Cdd:PRK09984 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdksAGShiellGRTVQREGRLARDIRKS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 81 RARLGLVSHQSFLYDDLTARENL--------EFYAGLYGVADPAG--RAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIA 150
Cdd:PRK09984 85 RANTGYIFQQFNLVNRLSVLENVligalgstPFWRTCFSWFTREQkqRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 151 RALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVT-HNLRRGIESATRLGILARGRLVFLAGRDEVDADG 229
Cdd:PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTlHQVDYALRYCERIVALRQGHVFYDGSSQQFDNER 244
|
....*
gi 644489132 230 FEDTY 234
Cdd:PRK09984 245 FDHLY 249
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
7-217 |
2.19e-22 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 92.39 E-value: 2.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVE--ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-EDDPEAFRAR 83
Cdd:PRK13635 3 EEIIRVEHISFRYPDAAtyALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLsEETVWDVRRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 84 LGLVshqsFLYDD-----LTARENLEFyaGLYGVADP----AGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALV 154
Cdd:PRK13635 83 VGMV----FQNPDnqfvgATVQDDVAF--GLENIGVPreemVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 155 NDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIeSATRLGILARGRLV 217
Cdd:PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGiTVLSITHDLDEAA-QADRVIVMNKGEIL 219
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
13-217 |
2.91e-22 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 91.09 E-value: 2.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 13 EGLRKAF-GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFD---LEDDPEAF-RARLGLV 87
Cdd:PRK10908 5 EHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDitrLKNREVPFlRRQIGMI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 SHQSFLYDDLTARENLEFYAGLYGVA--DPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEP 165
Cdd:PRK10908 85 FQDHHLLMDRTVYDNVAIPLIIAGASgdDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 166 YTGLDEHAASVLrerLRALHDRRR---TIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK10908 165 TGNLDDALSEGI---LRLFEEFNRvgvTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
7-217 |
3.56e-22 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 94.21 E-value: 3.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdledDPEAFR-ARLG 85
Cdd:PRK11288 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG-----QEMRFAsTTAA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 L-----VSHQSF-LYDDLTARENLefYAGL----YGVADPA---GRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARA 152
Cdd:PRK11288 77 LaagvaIIYQELhLVPEMTVAENL--YLGQlphkGGIVNRRllnYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 153 LVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
10-196 |
4.94e-22 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 88.27 E-value: 4.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIrgfdleddpeAFRARLGLVSH 89
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW----------GSTVKIGYFEQ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 qsflyddltarenlefyaglygvadpagraeellrqvdlydrrdspvgaFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:cd03221 71 -------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101
|
170 180
....*....|....*....|....*..
gi 644489132 170 DEHAASVLRErlrALHDRRRTIVMVTH 196
Cdd:cd03221 102 DLESIEALEE---ALKEYPGTVILVSH 125
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
25-216 |
1.02e-21 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 89.84 E-value: 1.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTARENL 103
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQyEHKYLHSKVSLVGQEPVLFAR-SLQDNI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 EFyaGLYGV--------ADPAGRAEELLRQVDLYDRRDSPVGA-FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAA 174
Cdd:cd03248 109 AY--GLQSCsfecvkeaAQKAHAHSFISELASGYDTEVGEKGSqLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 644489132 175 SVLRERLRALHdRRRTIVMVTHNLRRgIESATRLGILARGRL 216
Cdd:cd03248 187 QQVQQALYDWP-ERRTVLVIAHRLST-VERADQILVLDGGRI 226
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
24-198 |
1.06e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 90.85 E-value: 1.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIrGFDL------EDDPEAFRARLGLV----SHQSFl 93
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVitagkkNKKLKPLRKKVGIVfqfpEHQLF- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 94 ydDLTARENLEFYAGLYGV--ADPAGRAEELLRQV----DLYDRrdSPVgAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:PRK13634 100 --EETVEKDICFGPMNFGVseEDAKQKAREMIELVglpeELLAR--SPF-ELSGGQMRRVAIAGVLAMEPEVLVLDEPTA 174
|
170 180 190
....*....|....*....|....*....|..
gi 644489132 168 GLDEHAASVLRERLRALHDRRR-TIVMVTHNL 198
Cdd:PRK13634 175 GLDPKGRKEMMEMFYKLHKEKGlTTVLVTHSM 206
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
24-217 |
1.38e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 90.53 E-value: 1.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAF--RARLGLVshqsFLYDD--LTA 99
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWdiRNKAGMV----FQNPDnqIVA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 ---RENLEFYAGLYGVA--DPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDehaA 174
Cdd:PRK13633 101 tivEEDVAFGPENLGIPpeEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD---P 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 644489132 175 SVLRERLRALHDRRR----TIVMVTHNLRRGIEsATRLGILARGRLV 217
Cdd:PRK13633 178 SGRREVVNTIKELNKkygiTIILITHYMEEAVE-ADRIIVMDSGKVV 223
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
22-229 |
3.59e-21 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 91.71 E-value: 3.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 22 VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTAR 100
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQyDHHYLHRQVALVGQEPVLFSG-SVR 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLefyagLYG-----------VADPAGRAEELLRQVDLYDRRDSPVGAF-SRGMQQRLTIARALVNDPDLLLLDEPYTG 168
Cdd:TIGR00958 573 ENI-----AYGltdtpdeeimaAAKAANAHDFIMEFPNGYDTEVGEKGSQlSGGQKQRIAIARALVRKPRVLILDEATSA 647
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 169 LD---EHAASVLRERlralhdRRRTIVMVTHNLRRgIESATRLGILARGRLVFLAGRDEVDADG 229
Cdd:TIGR00958 648 LDaecEQLLQESRSR------ASRTVLLIAHRLST-VERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
10-217 |
5.92e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 88.36 E-value: 5.92e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLR-----PTSGTVRIRGFDL---EDDPEAFR 81
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElneeaRVEGEVRLFGRNIyspDVDPIEVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ARLGLVSHQSFLYDDLTARENLEFYAGLYGVADPAG----RAEELLRQVDLYDR-----RDSPvGAFSRGMQQRLTIARA 152
Cdd:PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKeldeRVEWALKKAALWDEvkdrlNDYP-SNLSGGQRQRLVIARA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 153 LVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDrRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK14267 164 LAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLI 227
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
24-215 |
5.99e-21 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 87.14 E-value: 5.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleddpeafraRLGLVSHQSFLYDDlTAREN- 102
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQEPWIQNG-TIRENi 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 103 ---LEFYAGLYgvaDPAGRAEELLRQVDLYDRRD-SPVG----AFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAA 174
Cdd:cd03250 87 lfgKPFDEERY---EKVIKACALEPDLEILPDGDlTEIGekgiNLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 644489132 175 -----SVLRERLRalhdRRRTIVMVTHNLrRGIESATRLGILARGR 215
Cdd:cd03250 164 rhifeNCILGLLL----NNKTRILVTHQL-QLLPHADQIVVLDNGR 204
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
10-196 |
6.82e-21 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 90.63 E-value: 6.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATL--LRPTSGTVRIR------------------ 69
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYHvalcekcgyverpskvge 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 70 -----GFDLE---------DDPE--AFRARLGLVSHQSF-LYDDLTAREN-LEFYAGL-YGVADPAGRAEELLRQVDLYD 130
Cdd:TIGR03269 81 pcpvcGGTLEpeevdfwnlSDKLrrRIRKRIAIMLQRTFaLYGDDTVLDNvLEALEEIgYEGKEAVGRAVDLIEMVQLSH 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 131 RRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLR-ALHDRRRTIVMVTH 196
Cdd:TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEeAVKASGISMVLTSH 227
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
24-217 |
7.39e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 88.12 E-value: 7.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDP-EAFRARLGLVshqsFLYDD-----L 97
Cdd:PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENlKEIRKKIGII----FQNPDnqfigA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 98 TARENLEFyaGLYGVADPAGRA----EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHA 173
Cdd:PRK13632 100 TVEDDIAF--GLENKKVPPKKMkdiiDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKG 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 644489132 174 ASVLRERLRALHD-RRRTIVMVTHNLRRGIEsATRLGILARGRLV 217
Cdd:PRK13632 178 KREIKKIMVDLRKtRKKTLISITHDMDEAIL-ADKVIVFSEGKLI 221
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
24-217 |
8.37e-21 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 87.16 E-value: 8.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTAREN 102
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKiGLHDLRSRISIIPQDPVLFSG-TIRSN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 103 LefyaglygvaDPAGRA--EEL---LRQVDLYDRRDSPVGA-----------FSRGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:cd03244 98 L----------DPFGEYsdEELwqaLERVGLKEFVESLPGGldtvveeggenLSVGQRQLLCLARALLRKSKILVLDEAT 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 644489132 167 TGLDEHAASVLRERLR-ALHDrrRTIVMVTHNLRRGIESAtRLGILARGRLV 217
Cdd:cd03244 168 ASVDPETDALIQKTIReAFKD--CTVLTIAHRLDTIIDSD-RILVLDKGRVV 216
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
5-217 |
1.59e-20 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 89.74 E-value: 1.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 5 AGEPFLTVEGLRKAFGG----VEALRGVSFTLDEGEFLCLFGPNGAGKS----TLLKILATLLRPTSGTVRIRGFDLEDD 76
Cdd:COG4172 2 MSMPLLSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 77 PEA-FRA----RLGLVshqsFlYDDLTA-----------RENLEFYAGLYGVADPAgRAEELLRQVDLYDRRdSPVGAF- 139
Cdd:COG4172 82 SEReLRRirgnRIAMI----F-QEPMTSlnplhtigkqiAEVLRLHRGLSGAAARA-RALELLERVGIPDPE-RRLDAYp 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 140 ---SRGMQQRLTIARALVNDPDLLLLDEPYTGLDehaASVLRERLRALHD-RRRT---IVMVTHNLrrGI--ESATRLGI 210
Cdd:COG4172 155 hqlSGGQRQRVMIAMALANEPDLLIADEPTTALD---VTVQAQILDLLKDlQRELgmaLLLITHDL--GVvrRFADRVAV 229
|
....*..
gi 644489132 211 LARGRLV 217
Cdd:COG4172 230 MRQGEIV 236
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
35-214 |
1.74e-20 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 90.07 E-value: 1.74e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 35 GEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSHQSFLYDDLTARENLEFYAGLYGVad 114
Cdd:TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV-- 2042
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 115 PAGRAEEL----LRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRT 190
Cdd:TIGR01257 2043 PAEEIEKVanwsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRA 2122
|
170 180
....*....|....*....|....
gi 644489132 191 IVMVTHNLRRGIESATRLGILARG 214
Cdd:TIGR01257 2123 VVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
10-200 |
2.28e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 86.76 E-value: 2.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATL--LRPT---SGTVRIRGFDLED---DPEAFR 81
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLndLIPGfrvEGKVTFHGKNLYApdvDPVEVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ARLGLVSHQSF-----LYDDLT--ARENlefyaGLYGVADPAgrAEELLRQVDLYDR-----RDSPVgAFSRGMQQRLTI 149
Cdd:PRK14243 91 RRIGMVFQKPNpfpksIYDNIAygARIN-----GYKGDMDEL--VERSLRQAALWDEvkdklKQSGL-SLSGGQQQRLCI 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 150 ARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALhDRRRTIVMVTHNLRR 200
Cdd:PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQ 212
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
21-198 |
8.00e-20 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 87.87 E-value: 8.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTA 99
Cdd:TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDiDRHTLRQFINYLPQEPYIFSG-SI 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLefyagLYGvADPAGRAEELLRQVDLYDRRDS----PVG----------AFSRGMQQRLTIARALVNDPDLLLLDEP 165
Cdd:TIGR01193 565 LENL-----LLG-AKENVSQDEIWAACEIAEIKDDienmPLGyqtelseegsSISGGQKQRIALARALLTDSKVLILDES 638
|
170 180 190
....*....|....*....|....*....|...
gi 644489132 166 YTGLDEHAASVLRERLRALHDrrRTIVMVTHNL 198
Cdd:TIGR01193 639 TSNLDTITEKKIVNNLLNLQD--KTIIFVAHRL 669
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
14-228 |
8.70e-20 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 87.54 E-value: 8.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 14 GLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILatllrptSGTVRIRGFD----LEDDPEAFRA-----RL 84
Cdd:NF040905 6 GITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVL-------SGVYPHGSYEgeilFDGEVCRFKDirdseAL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVS-HQSF-LYDDLTARENLeFYA---GLYGVAD---PAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVND 156
Cdd:NF040905 79 GIVIiHQELaLIPYLSIAENI-FLGnerAKRGVIDwneTNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAKALSKD 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644489132 157 PDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV--FLAGRDEVDAD 228
Cdd:NF040905 158 VKLLILDEPTAALNEEDSAALLDLLLELKAQGITSIIISHKLNEIRRVADSITVLRDGRTIetLDCRADEVTED 231
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
28-217 |
9.40e-20 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 87.59 E-value: 9.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 28 VSFTLDEGEFLCLFGPNGAGKSTLLKILATLLrPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTARENLEFy 106
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRElDPESWRKHLSWVGQNPQLPHG-TLRDNVLL- 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 107 aglygvADPAGRAEEL---LRQVD-------LYDRRDSPVG----AFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEH 172
Cdd:PRK11174 446 ------GNPDASDEQLqqaLENAWvseflplLPQGLDTPIGdqaaGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 644489132 173 AasvlrER--LRALHD--RRRTIVMVTHNLRRgIESATRLGILARGRLV 217
Cdd:PRK11174 520 S-----EQlvMQALNAasRRQTTLMVTHQLED-LAQWDQIWVMQDGQIV 562
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
20-217 |
1.07e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 85.24 E-value: 1.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-EDDPEAFRARLGLVSHQSflyDDL- 97
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPItKENIREVRKFVGLVFQNP---DDQi 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 98 ---TARENLEFYAGLYGV--ADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEH 172
Cdd:PRK13652 92 fspTVEQDIAFGPINLGLdeETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 644489132 173 AASVLRERLRALHDRR-RTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK13652 172 GVKELIDFLNDLPETYgMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
8-198 |
1.24e-19 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 84.78 E-value: 1.24e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleddpeafRARLGLV 87
Cdd:PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------KLRIGYV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 SHQsfLYDDLTarenLEFYAGLYGVADPAGRAEEL---LRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDE 164
Cdd:PRK09544 73 PQK--LYLDTT----LPLTVNRFLRLRPGTKKEDIlpaLKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146
|
170 180 190
....*....|....*....|....*....|....*
gi 644489132 165 PYTGLDEHAASVLRERLRAL-HDRRRTIVMVTHNL 198
Cdd:PRK09544 147 PTQGVDVNGQVALYDLIDQLrRELDCAVLMVSHDL 181
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
24-229 |
1.49e-19 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 86.94 E-value: 1.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTAREN 102
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTvTRASLRRNIAVVFQDAGLFNR-SIEDN 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 103 LEF------YAGLYGVADPAGRAEELLRQVDLYDRRdspVG----AFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEH 172
Cdd:PRK13657 429 IRVgrpdatDEEMRAAAERAQAHDFIERKPDGYDTV---VGergrQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 173 AASVLRERLRALHDRRRTIVmVTHNLRRgIESATRLGILARGRLVFLAGRDEVDADG 229
Cdd:PRK13657 506 TEAKVKAALDELMKGRTTFI-IAHRLST-VRNADRILVFDNGRVVESGSFDELVARG 560
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
14-170 |
1.93e-19 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 85.40 E-value: 1.93e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 14 GLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFD-LEDDPEA---FRARLGLVSH 89
Cdd:PRK11308 20 GLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDlLKADPEAqklLRQKIQIVFQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 90 QSflYDDLTAR--------ENLEFYAGLyGVADPAGRAEELLRQVDL----YDRRDSpvgAFSRGMQQRLTIARALVNDP 157
Cdd:PRK11308 100 NP--YGSLNPRkkvgqileEPLLINTSL-SAAERREKALAMMAKVGLrpehYDRYPH---MFSGGQRQRIAIARALMLDP 173
|
170
....*....|...
gi 644489132 158 DLLLLDEPYTGLD 170
Cdd:PRK11308 174 DVVVADEPVSALD 186
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
21-198 |
3.02e-19 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 83.78 E-value: 3.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEddpEAFRARLGLVSHQS--------F 92
Cdd:PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR---QALQKNLVAYVPQSeevdwsfpV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 93 LYDDLTARENLEfYAGLYGVADPAGRA--EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD 170
Cdd:PRK15056 96 LVEDVVMMGRYG-HMGWLRRAKKRDRQivTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174
|
170 180
....*....|....*....|....*...
gi 644489132 171 EHAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:PRK15056 175 VKTEARIISLLRELRDEGKTMLVSTHNL 202
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
21-228 |
3.27e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 84.13 E-value: 3.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEA---FRARLGLV----SHQSF- 92
Cdd:PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGlmkLRESVGMVfqdpDNQLFs 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 93 --LYDDLTarenlefyaglYGVADPAGRAEELLRQVD-------LYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:PRK13636 98 asVYQDVS-----------FGAVNLKLPEDEVRKRVDnalkrtgIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 164 EPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:PRK13636 167 EPTAGLDPMGVSEIMKLLVEMQKELGlTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
42-210 |
4.94e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 81.84 E-value: 4.94e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 42 GPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFrarLGLVSHQSFLYDDLTARENLEFYAGLYGVADPAGRAEE 121
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY---CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIH 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 122 LLRQVDLYDRRdspVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRErLRALHDRRRTIVMVTHNLRRG 201
Cdd:PRK13541 110 YFKLHDLLDEK---CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNN-LIVMKANSGGIVLLSSHLESS 185
|
....*....
gi 644489132 202 IESATRLGI 210
Cdd:PRK13541 186 IKSAQILQL 194
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
23-218 |
5.82e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 83.29 E-value: 5.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 23 EALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE-----AFRARLGLVSH--QSFLYD 95
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKdkyirPVRKRIGMVFQfpESQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 96 DLTARENL----EFYAGLYGVADpagRAEELLrqVDLYDRRD----SPVgAFSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:PRK13646 101 DTVEREIIfgpkNFKMNLDEVKN---YAHRLL--MDLGFSRDvmsqSPF-QMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 644489132 168 GLDEHAASVLRERLRALH-DRRRTIVMVTHNLRRGIESATRLGILARGRLVF 218
Cdd:PRK13646 175 GLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
24-217 |
6.60e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 83.24 E-value: 6.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-----EDDPEAFRARLGLVSH--QSFLYDD 96
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVsstskQKEIKPVRKKVGVVFQfpESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 97 lTARENLEFYAGLYGVADPAGR--AEELLRQVDLYDR--RDSPVgAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEH 172
Cdd:PRK13643 101 -TVLKDVAFGPQNFGIPKEKAEkiAAEKLEMVGLADEfwEKSPF-ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 644489132 173 AASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK13643 179 ARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
5-216 |
2.17e-18 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 81.26 E-value: 2.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 5 AGEPfLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFR--- 81
Cdd:PRK11247 9 QGTP-LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRlmf 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 --ARL----------GLvshqsflyddltarenlefyaGLYGVADPAgrAEELLRQVDLYDRRDSPVGAFSRGMQQRLTI 149
Cdd:PRK11247 88 qdARLlpwkkvidnvGL---------------------GLKGQWRDA--ALQALAAVGLADRANEWPAALSGGQKQRVAL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 150 ARALVNDPDLLLLDEPYTGLDEHA---ASVLRERLRALHDrrRTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:PRK11247 145 ARALIHRPGLLLLDEPLGALDALTrieMQDLIESLWQQHG--FTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
12-225 |
2.24e-18 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 82.86 E-value: 2.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLlKILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLvsHQS 91
Cdd:NF000106 16 VRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGRRPWRF*TWCANRRALRRTIG*--HRP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 92 FLY---DDLTARENLEFYAGLYGVA--DPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:NF000106 93 VR*grrESFSGRENLYMIGR*LDLSrkDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 167 TGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:NF000106 173 TGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
24-204 |
2.28e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 81.34 E-value: 2.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTV-----RIRGFDLED----------DPE--------AF 80
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIfynnqAITDDNFEKlrkhigivfqNPDnqfvgsivKY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 81 RARLGLVSHqSFLYDDLTARENlefyaglygvadpagraeELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLL 160
Cdd:PRK13648 104 DVAFGLENH-AVPYDEMHRRVS------------------EALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 644489132 161 LLDEPYTGLDEHAASVLRERLRALH-DRRRTIVMVTHNLRRGIES 204
Cdd:PRK13648 165 ILDEATSMLDPDARQNLLDLVRKVKsEHNITIISITHDLSEAMEA 209
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-217 |
2.88e-18 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 83.20 E-value: 2.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLRKAF-----------GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKilaTLLR--PTSGTVRI 68
Cdd:COG4172 268 VPPDAPPLLEARDLKVWFpikrglfrrtvGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGL---ALLRliPSEGEIRF 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 69 RGFDLED-DPEAFRA------------------RL--------GLVSHQsflyDDLTARENLEfyaglygvadpagRAEE 121
Cdd:COG4172 345 DGQDLDGlSRRALRPlrrrmqvvfqdpfgslspRMtvgqiiaeGLRVHG----PGLSAAERRA-------------RVAE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 122 LLRQVDL-YDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEH-AASVLrERLRALHDRRR-TIVMVTHNL 198
Cdd:COG4172 408 ALEEVGLdPAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSvQAQIL-DLLRDLQREHGlAYLFISHDL 486
|
250 260
....*....|....*....|.
gi 644489132 199 R--RGIesATRLGILARGRLV 217
Cdd:COG4172 487 AvvRAL--AHRVMVMKDGKVV 505
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
10-196 |
2.95e-18 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 82.20 E-value: 2.95e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAF-GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRArLGLVS 88
Cdd:PRK11650 4 LKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD-IAMVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 89 HQSFLYDDLTARENLEfyaglYGV-------ADPAGRAEE---LLRQVDLYDRRDSpvgAFSRGMQQRLTIARALVNDPD 158
Cdd:PRK11650 83 QNYALYPHMSVRENMA-----YGLkirgmpkAEIEERVAEaarILELEPLLDRKPR---ELSGGQRQRVAMGRAIVREPA 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 644489132 159 LLLLDEPYTGLDEHAASVLRERLRALHDR-RRTIVMVTH 196
Cdd:PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRlKTTSLYVTH 193
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
13-238 |
3.19e-18 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 81.19 E-value: 3.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 13 EGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED--DPEAFRaRLGLVSHQ 90
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHyaSKEVAR-RIGLLAQN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 91 SFLYDDLTARENLE---------FYAGLYGVADPAGRAeelLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLL 161
Cdd:PRK10253 90 ATTPGDITVQELVArgryphqplFTRWRKEDEEAVTKA---MQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 162 LDEPYTGLDEHAASVLRERLRALH-DRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDE-VDADGFEDTY-FRCM 238
Cdd:PRK10253 167 LDEPTTWLDISHQIDLLELLSELNrEKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEiVTAELIERIYgLRCM 246
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
7-238 |
3.87e-18 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 82.74 E-value: 3.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLE-DDPEAFR-ARL 84
Cdd:PRK10762 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfNGPKSSQeAGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVsHQSF-LYDDLTARENL----EF--------YAGLYGVADpagraeELLRQVDLYDRRDSPVGAFSRGMQQRLTIAR 151
Cdd:PRK10762 82 GII-HQELnLIPQLTIAENIflgrEFvnrfgridWKKMYAEAD------KLLARLNLRFSSDKLVGELSIGEQQMVEIAK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 152 ALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRlvFLAGRDEVDADgfE 231
Cdd:PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQ--FIAEREVADLT--E 230
|
....*..
gi 644489132 232 DTYFRCM 238
Cdd:PRK10762 231 DSLIEMM 237
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
25-221 |
4.21e-18 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 82.97 E-value: 4.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATllRPT----SGTVRIRGFdlEDDPEAFrARLGLVSHQSFLYD-DLTA 99
Cdd:PLN03140 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTggyiEGDIRISGF--PKKQETF-ARISGYCEQNDIHSpQVTV 970
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLEFYAGLYgVADPAGRAE------ELLRQVDLYDRRDSPVG-----AFSRGMQQRLTIARALVNDPDLLLLDEPYTG 168
Cdd:PLN03140 971 RESLIYSAFLR-LPKEVSKEEkmmfvdEVMELVELDNLKDAIVGlpgvtGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1049
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 644489132 169 LDEHAASVLRERLRALHDRRRTIVMVTHNLRRGI-ESATRLGILARGRLVFLAG 221
Cdd:PLN03140 1050 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIfEAFDELLLMKRGGQVIYSG 1103
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-217 |
4.45e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 80.91 E-value: 4.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 5 AGEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGtVRIRG---------FDLED 75
Cdd:PRK14271 17 AAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-YRYSGdvllggrsiFNYRD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 76 DPEaFRARLGLVSHQSFLYDdLTARENLefYAG-----LYGVADPAGRAEELLRQVDLYDR-----RDSPVgAFSRGMQQ 145
Cdd:PRK14271 96 VLE-FRRRVGMLFQRPNPFP-MSIMDNV--LAGvrahkLVPRKEFRGVAQARLTEVGLWDAvkdrlSDSPF-RLSGGQQQ 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 644489132 146 RLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDrRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLV 241
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
23-240 |
5.80e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 80.44 E-value: 5.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 23 EALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPE---AFRARLGLV---SHQSFLYDD 96
Cdd:PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRgllALRQQVATVfqdPEQQIFYTD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 97 LTAreNLEFYAGLYGVADP--AGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAA 174
Cdd:PRK13638 95 IDS--DIAFSLRNLGVPEAeiTRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 175 SVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGrlvflagrdEVDADGFEDTYFRCMEA 240
Cdd:PRK13638 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQG---------QILTHGAPGEVFACTEA 229
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
25-196 |
7.85e-18 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 82.23 E-value: 7.85e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRaRLGLVSHQSFLYDDLTARENLE 104
Cdd:PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK-RTGFVTQDDILYPHLTVRETLV 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 105 FYAGL-----YGVADPAGRAEELLRQVDLYDRRDSPVG-AFSRGM----QQRLTIARALVNDPDLLLLDEPYTGLDEHAA 174
Cdd:PLN03211 163 FCSLLrlpksLTKQEKILVAESVISELGLTKCENTIIGnSFIRGIsggeRKRVSIAHEMLINPSLLILDEPTSGLDATAA 242
|
170 180
....*....|....*....|..
gi 644489132 175 SVLRERLRALHDRRRTIVMVTH 196
Cdd:PLN03211 243 YRLVLTLGSLAQKGKTIVTSMH 264
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
8-199 |
1.04e-17 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 79.30 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATllRP----TSGTVRIRGFD-LEDDPEAfRA 82
Cdd:CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPaykiLEGDILFKGESiLDLEPEE-RA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 83 RLGL------------VSHQSFL---------YDDLTARENLEFYAGLYGVADPAGRAEELL-RQVDlydrrdspvGAFS 140
Cdd:CHL00131 83 HLGIflafqypieipgVSNADFLrlaynskrkFQGLPELDPLEFLEIINEKLKLVGMDPSFLsRNVN---------EGFS 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 141 RGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLR 199
Cdd:CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
18-217 |
1.29e-17 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 81.54 E-value: 1.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 18 AFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILA--TLL---------------------RPTSGTVrirgFD-- 72
Cdd:PRK11147 12 SFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNgeVLLddgriiyeqdlivarlqqdppRNVEGTV----YDfv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 73 ---LEDDPEAFRaRLGLVSHQsfLYDDLTAReNLEFYAGLYGVADPAG------RAEELLRQVDLydRRDSPVGAFSRGM 143
Cdd:PRK11147 88 aegIEEQAEYLK-RYHDISHL--VETDPSEK-NLNELAKLQEQLDHHNlwqlenRINEVLAQLGL--DPDAALSSLSGGW 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 144 QQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRalhDRRRTIVMVTHNlRRGIES-ATRLGILARGRLV 217
Cdd:PRK11147 162 LRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLK---TFQGSIIFISHD-RSFIRNmATRIVDLDRGKLV 232
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
24-198 |
4.33e-17 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 79.76 E-value: 4.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDLTA--- 99
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKlQLDSWRSRLAVVSQTPFLFSDTVAnni 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 --------RENLEFYAGLYGVADpagraeELLRQVDLYdrrDSPVGA----FSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:PRK10789 410 algrpdatQQEIEHVARLASVHD------DILRLPQGY---DTEVGErgvmLSGGQKQRISIARALLLNAEILILDDALS 480
|
170 180 190
....*....|....*....|....*....|.
gi 644489132 168 GLDEHAASVLRERLRALhDRRRTIVMVTHNL 198
Cdd:PRK10789 481 AVDGRTEHQILHNLRQW-GEGRTVIISAHRL 510
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
3-195 |
5.68e-17 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 76.53 E-value: 5.68e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 3 ASAGEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPT---SGTVRIRGFDLEDDPEA 79
Cdd:cd03233 1 ASTLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 80 FRARLGLVSHQSFLYDDLTARENLEFYAGLygvadpagRAEELLRQVdlydrrdspvgafSRGMQQRLTIARALVNDPDL 159
Cdd:cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRC--------KGNEFVRGI-------------SGGERKRVSIAEALVSRASV 139
|
170 180 190
....*....|....*....|....*....|....*...
gi 644489132 160 LLLDEPYTGLDehAASVLR--ERLRALHDRRRTIVMVT 195
Cdd:cd03233 140 LCWDNSTRGLD--SSTALEilKCIRTMADVLKTTTFVS 175
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
8-198 |
6.01e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 77.38 E-value: 6.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILaTLLRPTSGTVRIRG---------FDLEDDPE 78
Cdd:PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMNELESEVRVEGrveffnqniYERRVNLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 79 AFRARLGLVSHQSFLYDdLTARENLEFYAGLYG---VADPAGRAEELLRQVDLYDRRDSPVGA----FSRGMQQRLTIAR 151
Cdd:PRK14258 85 RLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGwrpKLEIDDIVESALKDADLWDEIKHKIHKsaldLSGGQQQRLCIAR 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 644489132 152 ALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNL 198
Cdd:PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSElTMVIVSHNL 211
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
24-225 |
8.33e-17 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 77.16 E-value: 8.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGtvrirgfDLEDDPEafrarLGLVSHQSFLYDDLTARENL 103
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-------KVDRNGE-----VSVIAISAGLSGQLTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 EFYAGLYGVADPAGRA--EELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERL 181
Cdd:PRK13546 107 EFKMLCMGFKRKEIKAmtPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 644489132 182 RALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV 225
Cdd:PRK13546 187 YEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
24-198 |
1.08e-16 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 78.78 E-value: 1.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleddpeafraRLGLVSHQSFLYDDLTARENL 103
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG------------SAALIAISSGLNGQLTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 EFYAGLYGVADPagRAEELLRQV----DLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRE 179
Cdd:PRK13545 107 ELKGLMMGLTKE--KIKEIIPEIiefaDIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLD 184
|
170
....*....|....*....
gi 644489132 180 RLRALHDRRRTIVMVTHNL 198
Cdd:PRK13545 185 KMNEFKEQGKTIFFISHSL 203
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-217 |
1.64e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 77.92 E-value: 1.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 6 GEPFLTVEGLRKAF-----GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIR----GFDLEDD 76
Cdd:TIGR03269 276 GEPIIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvgdeWVDMTKP 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 77 PEAFRAR----LGLVSHQSFLYDDLTARENLEFYAGLyGVADPAGR--AEELLRQVDLYDRRDSPV-----GAFSRGMQQ 145
Cdd:TIGR03269 356 GPDGRGRakryIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARmkAVITLKMVGFDEEKAEEIldkypDELSEGERH 434
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 644489132 146 RLTIARALVNDPDLLLLDEPYTGLDE-HAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPiTKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
10-199 |
4.34e-16 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 74.83 E-value: 4.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATL--LRPTSGTVRIRGFDL-EDDPEAfRARLGL 86
Cdd:PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLlELSPED-RAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 ------------VSHQSFLYDDLTARENLEFYAGL--YGVADPAGRAEELLRQVDLYDRRDSPVGaFSRGMQQRLTIARA 152
Cdd:PRK09580 81 fmafqypveipgVSNQFFLQTALNAVRSYRGQEPLdrFDFQDLMEEKIALLKMPEDLLTRSVNVG-FSGGEKKRNDILQM 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 644489132 153 LVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLR 199
Cdd:PRK09580 160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
25-198 |
4.43e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 76.78 E-value: 4.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDlTARENL 103
Cdd:COG5265 374 LKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDvTQASLRAAIGIVPQDTVLFND-TIAYNI 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 efyagLYGVADpAGRAE--ELLR--QVD-----LYDRRDSPVG----AFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD 170
Cdd:COG5265 453 -----AYGRPD-ASEEEveAAARaaQIHdfiesLPDGYDTRVGerglKLSGGEKQRVAIARTLLKNPPILIFDEATSALD 526
|
170 180 190
....*....|....*....|....*....|
gi 644489132 171 EHAAsvlRERLRALHD--RRRTIVMVTHNL 198
Cdd:COG5265 527 SRTE---RAIQAALREvaRGRTTLVIAHRL 553
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
23-217 |
5.53e-16 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 73.99 E-value: 5.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 23 EALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDP-EAFRARLGLVSHQSFLYDDlTARE 101
Cdd:cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPlEDLRSSLTIIPQDPTLFSG-TIRS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 102 NLefyaglygvaDPAGRAEEllrqVDLYDRRDSPVGA--FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRE 179
Cdd:cd03369 101 NL----------DPFDEYSD----EEIYGALRVSEGGlnLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQK 166
|
170 180 190
....*....|....*....|....*....|....*...
gi 644489132 180 RLRALHdRRRTIVMVTHNLRRGIESAtRLGILARGRLV 217
Cdd:cd03369 167 TIREEF-TNSTILTIAHRLRTIIDYD-KILVMDAGEVK 202
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
25-196 |
6.10e-16 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 76.69 E-value: 6.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATllRPTSGTV----RIRGFDLEDdpEAFRARLGLVSHQSFLYDDLTAR 100
Cdd:TIGR00956 779 LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE--RVTTGVItggdRLVNGRPLD--SSFQRSIGYVQQQDLHLPTSTVR 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLEFYAGL-----YGVADPAGRAEELLRQVDLYDRRDSPVGAFSRGM----QQRLTIARALVNDPDLLL-LDEPYTGLD 170
Cdd:TIGR00956 855 ESLRFSAYLrqpksVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLnveqRKRLTIGVELVAKPKLLLfLDEPTSGLD 934
|
170 180
....*....|....*....|....*.
gi 644489132 171 EHAASVLRERLRALHDRRRTIVMVTH 196
Cdd:TIGR00956 935 SQTAWSICKLMRKLADHGQAILCTIH 960
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
22-217 |
1.99e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 74.12 E-value: 1.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 22 VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEA-----------------FRARL 84
Cdd:PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNhelitnpyskkiknfkeLRRRV 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLV----SHQsfLYDDlTARENLEFYAGLYGVA--DPAGRAEELLRQVDL-YDRRD-SPVGaFSRGMQQRLTIARALVND 156
Cdd:PRK13631 119 SMVfqfpEYQ--LFKD-TIEKDIMFGPVALGVKksEAKKLAKFYLNKMGLdDSYLErSPFG-LSGGQKRRVAIAGILAIQ 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 644489132 157 PDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK13631 195 PEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
11-196 |
5.87e-15 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 73.43 E-value: 5.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 11 TVEGLRKAF-GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILAtllrptsgtvrirGFDLEDDPEAFRA---RLGL 86
Cdd:TIGR03719 6 TMNRVSKVVpPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA-------------GVDKDFNGEARPQpgiKVGY 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VSHQSFLYDDLTARENL---------------EFYAGLygvADPA----------GRAEELLRQVDLY--DRR------- 132
Cdd:TIGR03719 73 LPQEPQLDPTKTVRENVeegvaeikdaldrfnEISAKY---AEPDadfdklaaeqAELQEIIDAADAWdlDSQleiamda 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 133 ------DSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRerlRALHDRRRTIVMVTH 196
Cdd:TIGR03719 150 lrcppwDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLE---RHLQEYPGTVVAVTH 216
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
7-170 |
7.62e-15 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 71.74 E-value: 7.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAF---------GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDP 77
Cdd:PRK15112 2 ETLLEVRNLSKTFryrtgwfrrQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 78 EAFRA-RLGLVSHQSflYDDLTAREN----LEFYAGLYGVADPAGRAEEL---LRQVDLY-DRRDSPVGAFSRGMQQRLT 148
Cdd:PRK15112 82 YSYRSqRIRMIFQDP--STSLNPRQRisqiLDFPLRLNTDLEPEQREKQIietLRQVGLLpDHASYYPHMLAPGQKQRLG 159
|
170 180
....*....|....*....|..
gi 644489132 149 IARALVNDPDLLLLDEPYTGLD 170
Cdd:PRK15112 160 LARALILRPKVIIADEALASLD 181
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-222 |
1.04e-14 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 72.06 E-value: 1.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 1 MAASAGEPFLTVEGLRKAF----GGVEALRGVSFTLDEGEFLCLFGPNGAGKS----TLLKILATLLRpTSGTVRIRGFD 72
Cdd:PRK09473 4 LAQQQADALLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSqtafALMGLLAANGR-IGGSATFNGRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 73 LEDDPEAFRARLGLVSHQSFLYDDLTA-----------RENLEFYAGLygvadpaGRAEELLRQVDLYDRRDSPVG---- 137
Cdd:PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSlnpymrvgeqlMEVLMLHKGM-------SKAEAFEESVRMLDAVKMPEArkrm 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 138 -----AFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRT-IVMVTHNLrrGIESatrlGIL 211
Cdd:PRK09473 156 kmyphEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTaIIMITHDL--GVVA----GIC 229
|
250
....*....|.
gi 644489132 212 ARgRLVFLAGR 222
Cdd:PRK09473 230 DK-VLVMYAGR 239
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
25-234 |
1.05e-14 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 71.36 E-value: 1.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDLTARENL 103
Cdd:PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESwSSKAFARKVAYLPQQLPAAEGMTVRELV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 EF--YA-----GLYGVADPAgRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD-EHAAS 175
Cdd:PRK10575 107 AIgrYPwhgalGRFGAADRE-KVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDiAHQVD 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 176 VLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEV-DADGFEDTY 234
Cdd:PRK10575 186 VLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELmRGETLEQIY 245
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
24-217 |
1.58e-14 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 72.36 E-value: 1.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDLTA--- 99
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDyTLASLRNQVALVSQNVHLFNDTIAnni 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 ---------RENLEfyaglygVADPAGRAEELLRQVDlyDRRDSPVG----AFSRGMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:PRK11176 438 ayarteqysREQIE-------EAARMAYAMDFINKMD--NGLDTVIGengvLLSGGQRQRIAIARALLRDSPILILDEAT 508
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 167 TGLDEHAASVLRERLRALHdRRRTIVMVTHNLRRgIESATRLGILARGRLV 217
Cdd:PRK11176 509 SALDTESERAIQAALDELQ-KNRTSLVIAHRLST-IEKADEILVVEDGEIV 557
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
22-227 |
2.36e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 70.51 E-value: 2.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 22 VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-EDDPEAFRARLGLV-SHQSFLYDDLTA 99
Cdd:PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLtAENVWNLRRKIGMVfQNPDNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLEFYAGLYGVA--DPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVL 177
Cdd:PRK13642 100 EDDVAFGMENQGIPreEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 178 RERLRALHDRRR-TIVMVTHNLRRGiESATRLGILARGRLVFLAGRDEVDA 227
Cdd:PRK13642 180 MRVIHEIKEKYQlTVLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSELFA 229
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
6-170 |
4.45e-14 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 70.80 E-value: 4.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 6 GEPFLTVEGLRKAfgGVEalrGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL------------ 73
Cdd:PRK10762 254 GEVRLKVDNLSGP--GVN---DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVvtrspqdglang 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 74 -----EDdpeafRARLGLVShqsflydDLTAREN-----LEFYAGLYGVADPAGRAEELLRQVDLYD----RRDSPVGAF 139
Cdd:PRK10762 329 ivyisED-----RKRDGLVL-------GMSVKENmsltaLRYFSRAGGSLKHADEQQAVSDFIRLFNiktpSMEQAIGLL 396
|
170 180 190
....*....|....*....|....*....|.
gi 644489132 140 SRGMQQRLTIARALVNDPDLLLLDEPYTGLD 170
Cdd:PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
2-198 |
7.97e-14 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 70.22 E-value: 7.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLRKAFGGvealrgvsFTLD-------EGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVrirGFDLE 74
Cdd:PRK13409 333 DESERETLVEYPDLTKKLGD--------FSLEveggeiyEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV---DPELK 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 75 ddpeafrarlglVShqsflyddltarenlefYAGLYGVADPAGRAEELLRQV-----------------DLYDRRDSPVG 137
Cdd:PRK13409 402 ------------IS-----------------YKPQYIKPDYDGTVEDLLRSItddlgssyykseiikplQLERLLDKNVK 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 138 AFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD-EH---AASVLRerlRALHDRRRTIVMVTHNL 198
Cdd:PRK13409 453 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDvEQrlaVAKAIR---RIAEEREATALVVDHDI 514
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-228 |
1.20e-13 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 69.69 E-value: 1.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 1 MAASAGEPFLTVEGLRKafggvEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAF 80
Cdd:PRK15439 260 RQQAAGAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 81 RARLGLV-----SHQSFLYDDLTARENLEFYA----GLYgvADPAGRA---EELLRQVDL-YDRRDSPVGAFSRGMQQRL 147
Cdd:PRK15439 335 RLARGLVylpedRQSSGLYLDAPLAWNVCALThnrrGFW--IKPARENavlERYRRALNIkFNHAEQAARTLSGGNQQKV 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 148 TIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDA 227
Cdd:PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492
|
.
gi 644489132 228 D 228
Cdd:PRK15439 493 D 493
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
29-197 |
1.30e-13 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 68.20 E-value: 1.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 29 SFTLD-------EGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEAFRARL-GLVshQSFLYDDLTAR 100
Cdd:cd03237 12 EFTLEveggsisESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYeGTV--RDLLSSITKDF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLEFYAGlyGVADPagraeelLRQVDLYDRRdspVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDE----HAASV 176
Cdd:cd03237 90 YTHPYFKT--EIAKP-------LQIEQILDRE---VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVeqrlMASKV 157
|
170 180
....*....|....*....|.
gi 644489132 177 LRerlRALHDRRRTIVMVTHN 197
Cdd:cd03237 158 IR---RFAENNEKTAFVVEHD 175
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
29-228 |
1.36e-13 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 69.27 E-value: 1.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 29 SFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRgfdleddpeaFR--ARLGLVSHQSFLYD-------DL-- 97
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQ----------FShiTRLSFEQLQKLVSDewqrnntDMls 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 98 --------TARENLefyagLYGVADPAgRAEELLRQV---DLYDRRdspvgaF---SRGMQQRLTIARALVNDPDLLLLD 163
Cdd:PRK10938 93 pgeddtgrTTAEII-----QDEVKDPA-RCEQLAQQFgitALLDRR------FkylSTGETRKTLLCQALMSEPDLLILD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 164 EPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLAGRDEVDAD 228
Cdd:PRK10938 161 EPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
22-198 |
1.68e-13 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 69.67 E-value: 1.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 22 VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIR-GFDLED-DPEAFRARLGLVSHQSFLYDD--- 96
Cdd:PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINdSHNLKDiNLKWWRSKIGVVSQDPLLFSNsik 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 97 ------LTARENLEFYAGLYG----------------VADPAGRAEELLRQVD--------------------------- 127
Cdd:PTZ00265 478 nnikysLYSLKDLEALSNYYNedgndsqenknkrnscRAKCAGDLNDMSNTTDsneliemrknyqtikdsevvdvskkvl 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 128 -------LYDRRDSPVGA----FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALH-DRRRTIVMVT 195
Cdd:PTZ00265 558 ihdfvsaLPDKYETLVGSnaskLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKgNENRITIIIA 637
|
...
gi 644489132 196 HNL 198
Cdd:PTZ00265 638 HRL 640
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
42-196 |
2.81e-13 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 68.61 E-value: 2.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 42 GPNGAGKSTLLKILAtllrptsgtvrirGFDLEDDPEAFRA---RLGLVSHQSFLYDDLTARENL--------------- 103
Cdd:PRK11819 40 GLNGAGKSTLLRIMA-------------GVDKEFEGEARPApgiKVGYLPQEPQLDPEKTVRENVeegvaevkaaldrfn 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 EFYAgLYG--------VADPAGRAEELLRQVDLY--DRR-------------DSPVGAFSRGMQQRLTIARALVNDPDLL 160
Cdd:PRK11819 107 EIYA-AYAepdadfdaLAAEQGELQEIIDAADAWdlDSQleiamdalrcppwDAKVTKLSGGERRRVALCRLLLEKPDML 185
|
170 180 190
....*....|....*....|....*....|....*..
gi 644489132 161 LLDEPYTGLDehAASVL-RERLraLHDRRRTIVMVTH 196
Cdd:PRK11819 186 LLDEPTNHLD--AESVAwLEQF--LHDYPGTVVAVTH 218
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
6-217 |
3.62e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 68.01 E-value: 3.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 6 GEPFLTVEGLRKAfggveALRG-VSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRG--FDLEDDPEAFRA 82
Cdd:PRK11288 254 GEVRLRLDGLKGP-----GLREpISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGkpIDIRSPRDAIRA 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 83 ----------RLGLVSHQSfLYDDL--TARENLEFYAGLYGVADPAGRAEELLRQVDLYDR-RDSPVGAFSRGMQQRLTI 149
Cdd:PRK11288 329 gimlcpedrkAEGIIPVHS-VADNIniSARRHHLRAGCLINNRWEAENADRFIRSLNIKTPsREQLIMNLSGGNQQKAIL 407
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 150 ARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
25-196 |
4.45e-13 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 64.87 E-value: 4.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIrgfdleddPEafRARLGLVSHQSFLyddltarenle 104
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM--------PE--GEDLLFLPQRPYL----------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 105 fyaglygvadPAGRaeelLRQVDLY--DRRDSPvgafsrGMQQRLTIARALVNDPDLLLLDEPYTGLDEhaaSVLRERLR 182
Cdd:cd03223 76 ----------PLGT----LREQLIYpwDDVLSG------GEQQRLAFARLLLHKPKFVFLDEATSALDE---ESEDRLYQ 132
|
170
....*....|....
gi 644489132 183 ALHDRRRTIVMVTH 196
Cdd:cd03223 133 LLKELGITVISVGH 146
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
40-217 |
5.85e-13 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 67.21 E-value: 5.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 40 LFGPNGAGKSTLLKILATLLRPTSGTVRIRG---FDLEDD----PEafRARLGLVSHQSFLYDDLTARENLefyagLYGV 112
Cdd:PRK11144 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGrvlFDAEKGiclpPE--KRRIGYVFQDARLFPHYKVRGNL-----RYGM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 113 AdPAGRAE-----ELLRQVDLYDRrdSPvGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDehaasVLRER-----LR 182
Cdd:PRK11144 102 A-KSMVAQfdkivALLGIEPLLDR--YP-GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD-----LPRKRellpyLE 172
|
170 180 190
....*....|....*....|....*....|....*.
gi 644489132 183 ALHDRRRT-IVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK11144 173 RLAREINIpILYVSHSLDEILRLADRVVVLEQGKVK 208
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
7-199 |
6.21e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 67.42 E-value: 6.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 7 EPFLTVEGLRKAF-----------GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRpTSGTVRIRGFDLED 75
Cdd:PRK15134 273 SPLLDVEQLQVAFpirkgilkrtvDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 76 -DPEA---FRARLGLVSH--QSFLYDDLTAR----ENLEFYAGLYGVADPAGRAEELLRQVDL-YDRRDSPVGAFSRGMQ 144
Cdd:PRK15134 352 lNRRQllpVRHRIQVVFQdpNSSLNPRLNVLqiieEGLRVHQPTLSAAQREQQVIAVMEEVGLdPETRHRYPAEFSGGQR 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 644489132 145 QRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLR 199
Cdd:PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQlAYLFISHDLH 487
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
25-198 |
6.39e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 66.68 E-value: 6.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-EDDPEAFRARLGLVshqsFLYDD-----LT 98
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLtEENVWDIRHKIGMV----FQNPDnqfvgAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLEFYAGLYGVA--DPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASV 176
Cdd:PRK13650 99 VEDDVAFGLENKGIPheEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178
|
170 180
....*....|....*....|...
gi 644489132 177 LRERLRALHDRRR-TIVMVTHNL 198
Cdd:PRK13650 179 LIKTIKGIRDDYQmTVISITHDL 201
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
31-198 |
1.29e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 66.73 E-value: 1.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 31 TLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGtvrirgfDLEDDP------EAFRARlGLVSHQSFLYD--------- 95
Cdd:COG1245 95 VPKKGKVTGILGPNGIGKSTALKILSGELKPNLG-------DYDEEPswdevlKRFRGT-ELQDYFKKLANgeikvahkp 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 96 ----------DLTARENLEfyaglygVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEP 165
Cdd:COG1245 167 qyvdlipkvfKGTVRELLE-------KVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
170 180 190
....*....|....*....|....*....|....*....
gi 644489132 166 YTGLDehaasvLRERLRA------LHDRRRTIVMVTHNL 198
Cdd:COG1245 240 SSYLD------IYQRLNVarlireLAEEGKYVLVVEHDL 272
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
5-225 |
1.73e-12 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 66.35 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 5 AGEPFLTVEGL-RKAFGGVealRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDP--EAFR 81
Cdd:PRK09700 261 AHETVFEVRNVtSRDRKKV---RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSplDAVK 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ARLGLVSH---QSFLYDDLTARENLEF--------YAGLYGVADPAGRAEELLRQVDLYDRR----DSPVGAFSRGMQQR 146
Cdd:PRK09700 338 KGMAYITEsrrDNGFFPNFSIAQNMAIsrslkdggYKGAMGLFHEVDEQRTAENQRELLALKchsvNQNITELSGGNQQK 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 147 LTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV-FLAGRDEV 225
Cdd:PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTqILTNRDDM 497
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
24-233 |
2.11e-12 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 66.15 E-value: 2.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL-EDDPEAFRARLGLVSHQSFLYDDLTAREN 102
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVtAEQPEDYRKLFSAVFTDFHLFDQLLGPEG 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 103 LEfyaglygvADPAGRAEELLR-----QVDLYDRRDSPVgAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVL 177
Cdd:PRK10522 418 KP--------ANPALVEKWLERlkmahKLELEDGRISNL-KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREF 488
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 178 -RERLRALHDRRRTIVMVTHNlRRGIESATRLGILARGRLVFLAG--RDEVDADGFEDT 233
Cdd:PRK10522 489 yQVLLPLLQEMGKTIFAISHD-DHYFIHADRLLEMRNGQLSELTGeeRDAASRDAVART 546
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
10-182 |
2.43e-12 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 66.09 E-value: 2.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAF--GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRpTSGTVRIRGFDLED-DPEAFRARLGL 86
Cdd:TIGR01271 1218 MDVQGLTAKYteAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSvTLQTWRKAFGV 1296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VSHQSFLYDDlTARENLEFYAG-----LYGVADPAGRAEELLRQVDLYDRRDSPVG-AFSRGMQQRLTIARALVNDPDLL 160
Cdd:TIGR01271 1297 IPQKVFIFSG-TFRKNLDPYEQwsdeeIWKVAEEVGLKSVIEQFPDKLDFVLVDGGyVLSNGHKQLMCLARSILSKAKIL 1375
|
170 180
....*....|....*....|..
gi 644489132 161 LLDEPYTGLDEHAASVLRERLR 182
Cdd:TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLK 1397
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
28-217 |
2.92e-12 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 64.40 E-value: 2.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 28 VSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRirgFDLEDDPEAFRARL-------GLVSHQSFLYDDLTAR 100
Cdd:PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL---FDGENIPAMSRSRLytvrkrmSMLFQSGALFTDMNVF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLEfyaglYGVADPAGRAEELLRQ--------VDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEH 172
Cdd:PRK11831 103 DNVA-----YPLREHTQLPAPLLHStvmmkleaVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPI 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 644489132 173 AASVLRERLRAL-HDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK11831 178 TMGVLVKLISELnSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV 223
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
2-198 |
3.15e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 65.58 E-value: 3.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 2 AASAGEPFLTVEGLRKAFGGvealrgvsFTLD-------EGEFLCLFGPNGAGKSTLLKILATLLRPTSG----TVRI-- 68
Cdd:COG1245 334 REKEEETLVEYPDLTKSYGG--------FSLEveggeirEGEVLGIVGPNGIGKTTFAKILAGVLKPDEGevdeDLKIsy 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 69 RGFDLEDDPEafrarlGLVshQSFLYDDLTARENLEFYaglygvadpagrAEELLRQVDLYDRRDSPVGAFSRGMQQRLT 148
Cdd:COG1245 406 KPQYISPDYD------GTV--EEFLRSANTDDFGSSYY------------KTEIIKPLGLEKLLDKNVKDLSGGELQRVA 465
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 644489132 149 IARALVNDPDLLLLDEPYTGLD-E---HAASVLRerlRALHDRRRTIVMVTHNL 198
Cdd:COG1245 466 IAACLSRDADLYLLDEPSAHLDvEqrlAVAKAIR---RFAENRGKTAMVVDHDI 516
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
40-196 |
3.44e-12 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 65.30 E-value: 3.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 40 LFGPNGAGKSTLLKILATLLRPTSGTVRIrgfdledDPEAfraRLGLVSHQSFLYDDLT---------------ARENLE 104
Cdd:PRK15064 32 LIGANGCGKSTFMKILGGDLEPSAGNVSL-------DPNE---RLGKLRQDQFAFEEFTvldtvimghtelwevKQERDR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 105 FYAGL-------YGVADPAG------------RAEELLRQVDL-YDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDE 164
Cdd:PRK15064 102 IYALPemseedgMKVADLEVkfaemdgytaeaRAGELLLGVGIpEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDE 181
|
170 180 190
....*....|....*....|....*....|..
gi 644489132 165 PYTGLDEHAASVLRERLRAlhdRRRTIVMVTH 196
Cdd:PRK15064 182 PTNNLDINTIRWLEDVLNE---RNSTMIIISH 210
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
8-206 |
5.38e-12 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 64.81 E-value: 5.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIR-----GFDLEDDPEAFRA 82
Cdd:PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAkgiklGYFAQHQLEFLRA 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 83 RLGLVSHQSFLYDDLTaRENLEFYAGLYG-----VADPAGRaeellrqvdlydrrdspvgaFSRGMQQRLTIARALVNDP 157
Cdd:PRK10636 391 DESPLQHLARLAPQEL-EQKLRDYLGGFGfqgdkVTEETRR--------------------FSGGEKARLVLALIVWQRP 449
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 644489132 158 DLLLLDEPYTGLDEHAASVLRErlrALHDRRRTIVMVTHNlRRGIESAT 206
Cdd:PRK10636 450 NLLLLDEPTNHLDLDMRQALTE---ALIDFEGALVVVSHD-RHLLRSTT 494
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
31-183 |
5.58e-12 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 64.83 E-value: 5.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 31 TLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGtvrirgfDLEDDP------EAFRarlGLVSHQSF--LYD------- 95
Cdd:PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLG-------DYEEEPswdevlKRFR---GTELQNYFkkLYNgeikvvh 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 96 -----DL-------TARENLEfyaglygVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:PRK13409 165 kpqyvDLipkvfkgKVRELLK-------KVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
|
170 180
....*....|....*....|
gi 644489132 164 EPYTGLDehaasvLRERLRA 183
Cdd:PRK13409 238 EPTSYLD------IRQRLNV 251
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
21-199 |
6.87e-12 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 62.73 E-value: 6.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLkiLATL--LRPTSGTV-----RIRGFDLEDDPEAFRARLGLVSHQSFL 93
Cdd:cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLL--LAILgeMQTLEGKVhwsnkNESEPSFEATRSRNRYSVAYAAQKPWL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 94 YDdLTARENLEFYAGL-----YGVADpagrAEELLRQVDLYDRRD-SPVGA----FSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:cd03290 91 LN-ATVEENITFGSPFnkqryKAVTD----ACSLQPDIDLLPFGDqTEIGErginLSGGQRQRICVARALYQNTNIVFLD 165
|
170 180 190
....*....|....*....|....*....|....*...
gi 644489132 164 EPYTGLDEHAASVLRER--LRALHDRRRTIVMVTHNLR 199
Cdd:cd03290 166 DPFSALDIHLSDHLMQEgiLKFLQDDKRTLVLVTHKLQ 203
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
25-196 |
9.15e-12 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 64.06 E-value: 9.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRirgfdLEDDPEAF----RARLGLVS--------HQSF 92
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIA-----RPAGARVLflpqRPYLPLGTlreallypATAE 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 93 LYDDLTARENLEfyagLYGVADPAGRaeelLRQVDLYDRRDSPvgafsrGMQQRLTIARALVNDPDLLLLDEPYTGLDEH 172
Cdd:COG4178 454 AFSDAELREALE----AVGLGHLAER----LDEEADWDQVLSL------GEQQRLAFARLLLHKPDWLFLDEATSALDEE 519
|
170 180
....*....|....*....|....*
gi 644489132 173 AASVLRERLRA-LHDrrRTIVMVTH 196
Cdd:COG4178 520 NEAALYQLLREeLPG--TTVISVGH 542
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
20-203 |
9.74e-12 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 62.95 E-value: 9.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRpTSGTVRIRGFDLEDDP-EAFRARLGLVSHQSFLYDDlT 98
Cdd:cd03289 15 GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPlQKWRKAFGVIPQKVFIFSG-T 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ARENLEFYAG-----LYGVADPAGRA---EELLRQVDLYDRRDSPVgaFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD 170
Cdd:cd03289 93 FRKNLDPYGKwsdeeIWKVAEEVGLKsviEQFPGQLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170
|
170 180 190
....*....|....*....|....*....|....
gi 644489132 171 EHAASVLRERLR-ALHDrrRTIVMVTHNLRRGIE 203
Cdd:cd03289 171 PITYQVIRKTLKqAFAD--CTVILSEHRIEAMLE 202
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
24-217 |
9.99e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 63.28 E-value: 9.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTS---GTVRIRGFDL-EDDPEAFRARLGLVshqsFLYDD--- 96
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDnpnSKITVDGITLtAKTVWDIREKVGIV----FQNPDnqf 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 97 --LTARENLEFyaGLYGVADPagRAE------ELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTG 168
Cdd:PRK13640 98 vgATVGDDVAF--GLENRAVP--RPEmikivrDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 644489132 169 LDEHAASVLRERLRALH-DRRRTIVMVTHNLRRGiESATRLGILARGRLV 217
Cdd:PRK13640 174 LDPAGKEQILKLIRKLKkKNNLTVISITHDIDEA-NMADQVLVLDDGKLL 222
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
35-222 |
1.58e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 60.46 E-value: 1.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 35 GEFLCLFGPNGAGKSTLLKILATLLRPTSGTVrirgfdLEDDPEAFRARlglvshqsflyddltarenlefyaglygvad 114
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGV------IYIDGEDILEE------------------------------- 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 115 pagraeelLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEH------AASVLRERLRALHDRR 188
Cdd:smart00382 45 --------VLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEqealllLLEELRLLLLLKSEKN 116
|
170 180 190
....*....|....*....|....*....|....
gi 644489132 189 RTIVMVTHNLRRGIESATRlgILARGRLVFLAGR 222
Cdd:smart00382 117 LTVILTTNDEKDLGPALLR--RRFDRRIVLLLIL 148
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
10-225 |
1.66e-11 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 62.90 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEgLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATL----LRPTSGTVRIRGFD-LEDDPeafRARL 84
Cdd:PRK15093 9 LTIE-FKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVtkdnWRVTADRMRFDDIDlLRLSP---RERR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVSH---------QSFLydDLTARENLEFYAGLYG----------VADPAGRAEELLRQVDLYDRRDSpVGAF----SR 141
Cdd:PRK15093 85 KLVGHnvsmifqepQSCL--DPSERVGRQLMQNIPGwtykgrwwqrFGWRKRRAIELLHRVGIKDHKDA-MRSFpyelTE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 142 GMQQRLTIARALVNDPDLLLLDEPYTGLDEHA-ASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLVFLA 220
Cdd:PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTqAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
|
....*
gi 644489132 221 GRDEV 225
Cdd:PRK15093 242 PSKEL 246
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
21-227 |
2.00e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 63.39 E-value: 2.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleddpeafraRLGLVSHQSFLYDDlTAR 100
Cdd:TIGR01271 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIK 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLefyagLYGVADPAGR------AEELLRQVDLYDRRD-SPVG----AFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:TIGR01271 505 DNI-----IFGLSYDEYRytsvikACQLEEDIALFPEKDkTVLGeggiTLSGGQRARISLARAVYKDADLYLLDSPFTHL 579
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 170 DEHAASVLRERLRALHDRRRTIVMVTHNLRRgIESATRLGILARGRLVFLAGRDEVDA 227
Cdd:TIGR01271 580 DVVTEKEIFESCLCKLMSNKTRILVTSKLEH-LKKADKILLLHEGVCYFYGTFSELQA 636
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
13-197 |
3.07e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 62.82 E-value: 3.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 13 EGLRKAFGG-----VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILAT----LLRPTSGTVRIRGFDLEDDPEAFRAR 83
Cdd:TIGR00956 60 RGFRKLKKFrdtktFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASntdgFHIGVEGVITYDGITPEEIKKHYRGD 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 84 LGLVSHQSFLYDDLTARENLEFYAGLYGvadPAGRAEELLRQV------DLYDR-------RDSPVG-AFSRGM----QQ 145
Cdd:TIGR00956 140 VVYNAETDVHFPHLTVGETLDFAARCKT---PQNRPDGVSREEyakhiaDVYMAtyglshtRNTKVGnDFVRGVsggeRK 216
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 644489132 146 RLTIARALVNDPDLLLLDEPYTGLDehAASVLrERLRALhdrrRTIVMVTHN 197
Cdd:TIGR00956 217 RVSIAEASLGGAKIQCWDNATRGLD--SATAL-EFIRAL----KTSANILDT 261
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
6-186 |
3.26e-11 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 62.26 E-value: 3.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 6 GEPFLTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIrgfdleddpeAFRARLG 85
Cdd:TIGR03719 319 GDKVIEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI----------GETVKLA 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 LVShQSflYDDLTARENL--EFYAGL----YGVADPAGRAeellrqvdlYDRR--------DSPVGAFSRGMQQRLTIAR 151
Cdd:TIGR03719 389 YVD-QS--RDALDPNKTVweEISGGLdiikLGKREIPSRA---------YVGRfnfkgsdqQKKVGQLSGGERNRVHLAK 456
|
170 180 190
....*....|....*....|....*....|....*
gi 644489132 152 ALVNDPDLLLLDEPYTGLDEhaasvlrERLRALHD 186
Cdd:TIGR03719 457 TLKSGGNVLLLDEPTNDLDV-------ETLRALEE 484
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
23-217 |
4.05e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 61.56 E-value: 4.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 23 EALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLE------DDPEAFRARLGLVSH--QSFLY 94
Cdd:PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPanlkkiKEVKRLRKEIGLVFQfpEYQLF 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 95 DDlTARENLEFYAGLYGV--ADPAGRAEELLRQVDL---YDRRdSPVgAFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:PRK13645 105 QE-TIEKDIAFGPVNLGEnkQEAYKKVPELLKLVQLpedYVKR-SPF-ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 170 D---EHAASVLRERLRALHDRRrtIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK13645 182 DpkgEEDFINLFERLNKEYKKR--IIMVTHNMDQVLRIADEVIVMHEGKVI 230
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
25-198 |
4.79e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 62.27 E-value: 4.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleddpeafraRLGLVSHQSFLYDDlTARENLe 104
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SVAYVPQQAWIQND-SLRENI- 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 105 fyagLYGVADPAGRAEELLRQVDLY-DRRDSPVG----------AFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHA 173
Cdd:TIGR00957 720 ----LFGKALNEKYYQQVLEACALLpDLEILPSGdrteigekgvNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795
|
170 180
....*....|....*....|....*..
gi 644489132 174 ASVLRERLRALHD--RRRTIVMVTHNL 198
Cdd:TIGR00957 796 GKHIFEHVIGPEGvlKNKTRILVTHGI 822
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
12-196 |
6.34e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 61.50 E-value: 6.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIrGFDLE----Ddpeafrarlglv 87
Cdd:PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEvayfD------------ 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 88 SHQSFLYDDLTARENLefyaglygvADpaGRAEELLRQVD------LYD------RRDSPVGAFSRGMQQRLTIARALVN 155
Cdd:PRK11147 389 QHRAELDPEKTVMDNL---------AE--GKQEVMVNGRPrhvlgyLQDflfhpkRAMTPVKALSGGERNRLLLARLFLK 457
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 644489132 156 DPDLLLLDEPYTGLDEHAASVLRErlrALHDRRRTIVMVTH 196
Cdd:PRK11147 458 PSNLLILDEPTNDLDVETLELLEE---LLDSYQGTVLLVSH 495
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
34-198 |
6.93e-11 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 60.46 E-value: 6.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 34 EGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVR-----------IRGFDLEDDPEAFRARLGLVSHQSFLYDDL----- 97
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDdppdwdeildeFRGSELQNYFTKLLEGDVKVIVKPQYVDLIpkavk 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 98 -TARENLEfyaglygVADPAGRAEELLRQVDLYDRRDSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD----EH 172
Cdd:cd03236 105 gKVGELLK-------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDikqrLN 177
|
170 180
....*....|....*....|....*.
gi 644489132 173 AASVLRErlraLHDRRRTIVMVTHNL 198
Cdd:cd03236 178 AARLIRE----LAEDDNYVLVVEHDL 199
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
25-196 |
7.34e-11 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 59.97 E-value: 7.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLL--RPTSGTvrirgFDLEDDPeafrarlglvshqsfLYDDLTAREN 102
Cdd:COG2401 46 LRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALkgTPVAGC-----VDVPDNQ---------------FGREASLIDA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 103 LefyaglyGVADPAGRAEELLRQVDLYD----RRdsPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLR 178
Cdd:COG2401 106 I-------GRKGDFKDAVELLNAVGLSDavlwLR--RFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVA 176
|
170
....*....|....*....
gi 644489132 179 ERLRALHDRRR-TIVMVTH 196
Cdd:COG2401 177 RNLQKLARRAGiTLVVATH 195
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
10-207 |
1.23e-10 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 60.68 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIrgfdleddpeAFRARLGLVS- 88
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW----------SENANIGYYAq 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 89 -HQSFLYDDLTARENLEFYAGlygvadpAGRAEELLRQV---DLYDRRD--SPVGAFSRGMQQRLTIARALVNDPDLLLL 162
Cdd:PRK15064 390 dHAYDFENDLTLFDWMSQWRQ-------EGDDEQAVRGTlgrLLFSQDDikKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 644489132 163 DEPYTGLDEHAASVLRErlrALHDRRRTIVMVTHNlRRGIES-ATR 207
Cdd:PRK15064 463 DEPTNHMDMESIESLNM---ALEKYEGTLIFVSHD-REFVSSlATR 504
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
13-217 |
1.95e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 60.13 E-value: 1.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 13 EGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRG--FDLEDDPEAFRARLGLVSHQ 90
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGkeIDFKSSKEALENGISMVHQE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 91 SFLYDDLTARENLefYAGLYGVA-----------DPAGRAEELLRQVDLYDRrdspVGAFSRGMQQRLTIARALVNDPDL 159
Cdd:PRK10982 82 LNLVLQRSVMDNM--WLGRYPTKgmfvdqdkmyrDTKAIFDELDIDIDPRAK----VATLSVSQMQMIEIAKAFSYNAKI 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 160 LLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK10982 156 VIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
26-217 |
2.36e-10 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 58.94 E-value: 2.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 26 RGVSFTLDEGEFLCLFGPNGAGKS----TLLKILATLLRPTSGTVRIRGFDLEddPEAFRARLGLVSHQ---SFLYDDLT 98
Cdd:PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVA--PCALRGRKIATIMQnprSAFNPLHT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 99 ----ARENLEfyagLYGVADPAGRAEELLRQVDLYD-RRDSPVGAF--SRGMQQRLTIARALVNDPDLLLLDEPYTGLDE 171
Cdd:PRK10418 98 mhthARETCL----ALGKPADDATLTAALEAVGLENaARVLKLYPFemSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 644489132 172 HA-ASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK10418 174 VAqARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV 220
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
24-170 |
2.51e-10 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 59.33 E-value: 2.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 24 ALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVshQSFLYDDLTA--- 99
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGmKDDEWRAVRSDI--QMIFQDPLASlnp 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 --------RENLEFYAGLYGVADPAGRAEELLRQVDL-------YDRRdspvgaFSRGMQQRLTIARALVNDPDLLLLDE 164
Cdd:PRK15079 114 rmtigeiiAEPLRTYHPKLSRQEVKDRVKAMMLKVGLlpnlinrYPHE------FSGGQCQRIGIARALILEPKLIICDE 187
|
....*.
gi 644489132 165 PYTGLD 170
Cdd:PRK15079 188 PVSALD 193
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
8-217 |
3.81e-10 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 59.33 E-value: 3.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 8 PFLTVEGLRKAF--GGVE--ALRGVSFTLDEGEFLCLFGPNGAGKS-TLLKILATLLRP----TSGTVRIRGFDLEDDPE 78
Cdd:PRK15134 4 PLLAIENLSVAFrqQQTVrtVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPpvvyPSGDIRFHGESLLHASE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 79 A-FRA----RLGLVSHQSFLydDLTARENLEfyAGLY-------GVADPAGRAEEL--LRQVDLYDR----RDSPvGAFS 140
Cdd:PRK15134 84 QtLRGvrgnKIAMIFQEPMV--SLNPLHTLE--KQLYevlslhrGMRREAARGEILncLDRVGIRQAakrlTDYP-HQLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 141 RGMQQRLTIARALVNDPDLLLLDEPYTGLDehaASVLRERLRALHDRRRTIVM----VTHNLRRGIESATRLGILARGRL 216
Cdd:PRK15134 159 GGERQRVMIAMALLTRPELLIADEPTTALD---VSVQAQILQLLRELQQELNMgllfITHNLSIVRKLADRVAVMQNGRC 235
|
.
gi 644489132 217 V 217
Cdd:PRK15134 236 V 236
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
21-170 |
5.53e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 57.94 E-value: 5.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 21 GVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGfdleddpeafraRLGLVSHQSFLYDDlTAR 100
Cdd:cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------RISFSSQFSWIMPG-TIK 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLefyagLYGVADPAGRAEELLRQVDLY-------DRRDSPVG----AFSRGMQQRLTIARALVNDPDLLLLDEPYTGL 169
Cdd:cd03291 116 ENI-----IFGVSYDEYRYKSVVKACQLEeditkfpEKDNTVLGeggiTLSGGQRARISLARAVYKDADLYLLDSPFGYL 190
|
.
gi 644489132 170 D 170
Cdd:cd03291 191 D 191
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
10-217 |
6.84e-10 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 58.21 E-value: 6.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVE----ALRGVSFTLDEGEFLCLFGPNGAGKS-TLLKILATLLRP---TSGTVRIRGFDLEDDPEAFR 81
Cdd:PRK11022 4 LNVDKLSVHFGDESapfrAVDRISYSVKQGEVVGIVGESGSGKSvSSLAIMGLIDYPgrvMAEKLEFNGQDLQRISEKER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 82 ARLgLVSHQSFLYDDLTARENLEFYAGlYGVADP------------AGRAEELLRQVDLYD---RRDSPVGAFSRGMQQR 146
Cdd:PRK11022 84 RNL-VGAEVAMIFQDPMTSLNPCYTVG-FQIMEAikvhqggnkktrRQRAIDLLNQVGIPDpasRLDVYPHQLSGGMSQR 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 644489132 147 LTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRR-TIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENmALVLITHDLALVAEAAHKIIVMYAGQVV 233
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
20-216 |
8.33e-10 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 58.33 E-value: 8.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 20 GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVrirgfdleddpeaFRA---RLGLVSHQSFLYDD 96
Cdd:PLN03073 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-------------FRSakvRMAVFSQHHVDGLD 586
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 97 LTARENLEFYAGLYGVADPAGRAE--------ELLRQvdlydrrdsPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTG 168
Cdd:PLN03073 587 LSSNPLLYMMRCFPGVPEQKLRAHlgsfgvtgNLALQ---------PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNH 657
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 644489132 169 LDEHAASVLRERLRALHDrrrTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:PLN03073 658 LDLDAVEALIQGLVLFQG---GVLMVSHDEHLISGSVDELWVVSEGKV 702
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
12-68 |
4.41e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 55.90 E-value: 4.41e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRI 68
Cdd:PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
25-196 |
5.13e-09 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 55.78 E-value: 5.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGeFLCLFGPNGAGKSTLLKILATLLRPTSG-TVRIRGFDLEDDPEA--------FRARLG---------- 85
Cdd:COG3593 14 IKDLSIELSDD-LTVLVGENNSGKSSILEALRLLLGPSSSrKFDEEDFYLGDDPDLpeieieltFGSLLSrllrlllkee 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 --------LVSHQSFLYDDLTA-RENLEFYAGLYG------VADPAGRAEELLRQVDLY--DRRDSPVGAFSRGMQQRLT 148
Cdd:COG3593 93 dkeeleeaLEELNEELKEALKAlNELLSEYLKELLdgldleLELSLDELEDLLKSLSLRieDGKELPLDRLGSGFQRLIL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 149 IA--RALV-----NDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTH 196
Cdd:COG3593 173 LAllSALAelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNQVIITTH 227
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
28-216 |
6.93e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 55.60 E-value: 6.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 28 VSFTLDEGEFLCLFGPNGAGKSTLLK-ILATLLRPTSGTVRIRG--FDLEDDPEAFRARLGLVSH---QSFLYDDLTARE 101
Cdd:TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQaLFGAYPGKFEGNVFINGkpVDIRNPAQAIRAGIAMVPEdrkRHGIVPILGVGK 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 102 N-----LEFYAGLyGVADPAGRAEELLRQVDLYDRR----DSPVGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEH 172
Cdd:TIGR02633 359 NitlsvLKSFCFK-MRIDAAAELQIIGSAIQRLKVKtaspFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 644489132 173 AASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:TIGR02633 438 AKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
25-170 |
7.38e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 55.41 E-value: 7.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKIlatllrptsgtvrIRGfdleDDPEAF--------RAR------------L 84
Cdd:PRK10938 276 LHNLSWQVNPGEHWQIVGPNGAGKSTLLSL-------------ITG----DHPQGYsndltlfgRRRgsgetiwdikkhI 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 85 GLVSHQSFL-YDDLTAREN--LEFY---AGLYGVADPAGR--AEELLRQVDLYDR-RDSPVGAFSRGmQQRLT-IARALV 154
Cdd:PRK10938 339 GYVSSSLHLdYRVSTSVRNviLSGFfdsIGIYQAVSDRQQklAQQWLDILGIDKRtADAPFHSLSWG-QQRLAlIVRALV 417
|
170
....*....|....*.
gi 644489132 155 NDPDLLLLDEPYTGLD 170
Cdd:PRK10938 418 KHPTLLILDEPLQGLD 433
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
63-198 |
1.31e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 55.04 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 63 SGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDdLTARENLEF---YAGLYGVADPAGRA--EELLRQV-DLYDRRDSP 135
Cdd:PTZ00265 1276 SGKILLDGVDICDyNLKDLRNLFSIVSQEPMLFN-MSIYENIKFgkeDATREDVKRACKFAaiDEFIESLpNKYDTNVGP 1354
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644489132 136 VG-AFSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRR-RTIVMVTHNL 198
Cdd:PTZ00265 1355 YGkSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAdKTIITIAHRI 1419
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
10-217 |
1.84e-08 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 53.68 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLL--RPTSGTVRIRG-FDLEDDPEA------- 79
Cdd:PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLtgGGAPRGARVTGdVTLNGEPLAaidaprl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 80 --FRARLGLVSHQSFLYddlTARENLEFyaGLYGVADPAGRAEELLRQV----------DLYDRRDspVGAFSRGMQQRL 147
Cdd:PRK13547 82 arLRAVLPQAAQPAFAF---SAREIVLL--GRYPHARRAGALTHRDGEIawqalalagaTALVGRD--VTTLSGGELARV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 148 TIARALVN---------DPDLLLLDEPYTGLDEHAASVLRERLRAL-HDRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK13547 155 QFARVLAQlwpphdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLaRDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
25-217 |
2.00e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 54.60 E-value: 2.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFD-----LEDdpeaFRARLGLVSHQSFLYDDlTA 99
Cdd:PLN03232 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDvakfgLTD----LRRVLSIIPQSPVLFSG-TV 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLEFY-----AGLYgvadpagraeELLRQVDLYDR-RDSPVG----------AFSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:PLN03232 1327 RFNIDPFsehndADLW----------EALERAHIKDViDRNPFGldaevseggeNFSVGQRQLLSLARALLRRSKILVLD 1396
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 644489132 164 EPYTGLDEHAASVLRERLRAlHDRRRTIVMVTHNLRRGIEsATRLGILARGRLV 217
Cdd:PLN03232 1397 EATASVDVRTDSLIQRTIRE-EFKSCTMLVIAHRLNTIID-CDKILVLSSGQVL 1448
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
25-198 |
3.32e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 53.83 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPtsgtvrirgfdLEDDPEAFRARLGLVSHQSFLYDdLTARENL- 103
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-----------AETSSVVIRGSVAYVPQVSWIFN-ATVRENIl 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 ---EFYAGLYGVADPAgraEELLRQVDLYDRRD-SPVGA----FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAA- 174
Cdd:PLN03232 701 fgsDFESERYWRAIDV---TALQHDLDLLPGRDlTEIGErgvnISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAh 777
|
170 180
....*....|....*....|....*...
gi 644489132 175 ----SVLRERLRAlhdrrRTIVMVTHNL 198
Cdd:PLN03232 778 qvfdSCMKDELKG-----KTRVLVTNQL 800
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
5-225 |
3.91e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 53.32 E-value: 3.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 5 AGEPFLTVEGLRKAF---GG--------VEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDL 73
Cdd:PRK10261 309 DGEPILQVRNLVTRFplrSGllnrvtreVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 74 EDDPEafRARLGLVSHQSFLYDDLTAR------------ENLEFYAGLYGVAdPAGRAEELLRQVDLydrrdSPVGA--- 138
Cdd:PRK10261 389 DTLSP--GKLQALRRDIQFIFQDPYASldprqtvgdsimEPLRVHGLLPGKA-AAARVAWLLERVGL-----LPEHAwry 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 139 ---FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDehaASVLRERLRALHDRRRTI----VMVTHNLRRGIESATRLGIL 211
Cdd:PRK10261 461 pheFSGGQRQRICIARALALNPKVIIADEAVSALD---VSIRGQIINLLLDLQRDFgiayLFISHDMAVVERISHRVAVM 537
|
250
....*....|....
gi 644489132 212 ARGRLVFLAGRDEV 225
Cdd:PRK10261 538 YLGQIVEIGPRRAV 551
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
10-217 |
3.94e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 53.32 E-value: 3.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRKAF----GGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGF----------DLED 75
Cdd:PRK10261 13 LAVENLNIAFmqeqQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMllrrrsrqviELSE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 76 DPEAFRARLGLVSHQSFLYDDLTA-----------RENLEFYAGLyGVADPAGRAEELLRQVDLYDRRdSPVGAF----S 140
Cdd:PRK10261 93 QSAAQMRHVRGADMAMIFQEPMTSlnpvftvgeqiAESIRLHQGA-SREEAMVEAKRMLDQVRIPEAQ-TILSRYphqlS 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 141 RGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALH-DRRRTIVMVTHNLRRGIESATRLGILARGRLV 217
Cdd:PRK10261 171 GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQkEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
25-217 |
4.31e-08 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 53.18 E-value: 4.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLED-DPEAFRARLGLVSHQSFLYDDltarenl 103
Cdd:PRK10790 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSlSHSVLRQGVAMVQQDPVVLAD------- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 EFYAGLygvadPAGR--AEE----LLRQVDLYD-RRDSPVGAFSR----------GMQQRLTIARALVNDPDLLLLDEPY 166
Cdd:PRK10790 430 TFLANV-----TLGRdiSEEqvwqALETVQLAElARSLPDGLYTPlgeqgnnlsvGQKQLLALARVLVQTPQILILDEAT 504
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 167 TGLDEHAASVLRERLRALHDrRRTIVMVTHNLRRGIESATRLgILARGRLV 217
Cdd:PRK10790 505 ANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEADTIL-VLHRGQAV 553
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
10-225 |
4.78e-08 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 52.60 E-value: 4.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEgLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRP----TSGTVRIRGFDLEDDPEafRARLG 85
Cdd:COG4170 9 LTIE-IDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDnwhvTADRFRWNGIDLLKLSP--RERRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 86 LVSH---------QSFLYDDLTARENLEFyaglygvADPAG---------------RAEELLRQVDLYDRRD---SPVGA 138
Cdd:COG4170 86 IIGReiamifqepSSCLDPSAKIGDQLIE-------AIPSWtfkgkwwqrfkwrkkRAIELLHRVGIKDHKDimnSYPHE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 139 FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDE-HAASVLR--ERLRALHDrrRTIVMVTHNLRRGIESATRLGILARGR 215
Cdd:COG4170 159 LTEGECQKVMIAMAIANQPRLLIADEPTNAMEStTQAQIFRllARLNQLQG--TSILLISHDLESISQWADTITVLYCGQ 236
|
250
....*....|
gi 644489132 216 LVFLAGRDEV 225
Cdd:COG4170 237 TVESGPTEQI 246
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
25-217 |
7.52e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 52.82 E-value: 7.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFD-----LEDdpeaFRARLGLVSHQSFLYDDlTA 99
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDiskfgLMD----LRKVLGIIPQAPVLFSG-TV 1329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 100 RENLefyaglygvaDPAGRAE-----ELLRQVDLYD--RR-----DSPVGA----FSRGMQQRLTIARALVNDPDLLLLD 163
Cdd:PLN03130 1330 RFNL----------DPFNEHNdadlwESLERAHLKDviRRnslglDAEVSEagenFSVGQRQLLSLARALLRRSKILVLD 1399
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 164 EPYTGLDEHAASV----LRERLRALhdrrrTIVMVTHNLRRGIESaTRLGILARGRLV 217
Cdd:PLN03130 1400 EATAAVDVRTDALiqktIREEFKSC-----TMLIIAHRLNTIIDC-DRILVLDAGRVV 1451
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
5-216 |
1.45e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 51.65 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 5 AGEPFLTVEGLRKAfgGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLE--DDPEAFRA 82
Cdd:PRK10982 246 PGEVILEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINnhNANEAINH 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 83 RLGLVSHQ-------SFL---YDDLTAreNLEFYAGLYGVADPAGRAEELLRQVDLYdRRDSP-----VGAFSRGMQQRL 147
Cdd:PRK10982 324 GFALVTEErrstgiyAYLdigFNSLIS--NIRNYKNKVGLLDNSRMKSDTQWVIDSM-RVKTPghrtqIGSLSGGNQQKV 400
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 148 TIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
25-198 |
1.58e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 51.66 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTS-GTVRIRGfdleddpeafraRLGLVSHQSFLYDdLTARENL 103
Cdd:PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSdASVVIRG------------TVAYVPQVSWIFN-ATVRDNI 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 ----EFYAGLYgvaDPAGRAEELLRQVDLYDRRD-SPVGA----FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAA 174
Cdd:PLN03130 700 lfgsPFDPERY---ERAIDVTALQHDLDLLPGGDlTEIGErgvnISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVG 776
|
170 180
....*....|....*....|....*....
gi 644489132 175 -----SVLRERLralhdRRRTIVMVTHNL 198
Cdd:PLN03130 777 rqvfdKCIKDEL-----RGKTRVLVTNQL 800
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
19-197 |
3.18e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 50.55 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 19 FGGVEALRGVSFTLDE-------GEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRG-FDL----EDDPEAFRARLGL 86
Cdd:PRK10636 4 FSSLQIRRGVRVLLDNatatinpGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGnWQLawvnQETPALPQPALEY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VSHQSFLYDDLTA-------RENLEFYAGLYGVADP------AGRAEELLRQVDL-YDRRDSPVGAFSRGMQQRLTIARA 152
Cdd:PRK10636 84 VIDGDREYRQLEAqlhdaneRNDGHAIATIHGKLDAidawtiRSRAASLLHGLGFsNEQLERPVSDFSGGWRMRLNLAQA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 644489132 153 LVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDrrrTIVMVTHN 197
Cdd:PRK10636 164 LICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQG---TLILISHD 205
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
12-196 |
4.26e-07 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 50.24 E-value: 4.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 12 VEGLRKAFGGVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLKILAtlLRPTSGTVR----------IRGFD-------LE 74
Cdd:PLN03073 180 MENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA--MHAIDGIPKncqilhveqeVVGDDttalqcvLN 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 75 DDPEafRARL-----GLVSHQSFL-YDDLTARENLEFYAGLYGvaDPAG-RAEELLRQVDLYD-----RRDSPVGA---- 138
Cdd:PLN03073 258 TDIE--RTQLleeeaQLVAQQRELeFETETGKGKGANKDGVDK--DAVSqRLEEIYKRLELIDaytaeARAASILAglsf 333
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 139 -----------FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALhdrRRTIVMVTH 196
Cdd:PLN03073 334 tpemqvkatktFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSH 399
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
96-198 |
4.39e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 47.32 E-value: 4.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 96 DLTARENLEFYAGLYGVAdpagRAEELLRQVDL-YDRRDSPVGAFSRGMQQRLTIARAL---VNDPDLLLLDEPYTGLDE 171
Cdd:TIGR00630 790 DMTVEEAYEFFEAVPSIS----RKLQTLCDVGLgYIRLGQPATTLSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLHF 865
|
90 100
....*....|....*....|....*..
gi 644489132 172 HAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:TIGR00630 866 DDIKKLLEVLQRLVDKGNTVVVIEHNL 892
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
25-218 |
4.42e-06 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 47.47 E-value: 4.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRirgfdleddpeAFRArLGLVSHQSFLYDdLTARENLE 104
Cdd:PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW-----------AERS-IAYVPQQAWIMN-ATVRGNIL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 105 FYaglygvaDP--AGRAEELLRQVDL-YDRRDSPVGA----------FSRGMQQRLTIARALVNDPDLLLLDEPYTGLDE 171
Cdd:PTZ00243 743 FF-------DEedAARLADAVRVSQLeADLAQLGGGLeteigekgvnLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 644489132 172 HAASVLRERLRALHDRRRTIVMVTHNLRRgIESATRLGILARGRLVF 218
Cdd:PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV-VPRADYVVALGDGRVEF 861
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
96-198 |
8.71e-06 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 45.68 E-value: 8.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 96 DLTARENLEFYAGLYGVAdpagRAEELLRQVDL-YDRRDSPVGAFSRGMQQRLTIARALVN---DPDLLLLDEPYTGLDE 171
Cdd:cd03271 130 DMTVEEALEFFENIPKIA----RKLQTLCDVGLgYIKLGQPATTLSGGEAQRIKLAKELSKrstGKTLYILDEPTTGLHF 205
|
90 100
....*....|....*....|....*..
gi 644489132 172 HAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:cd03271 206 HDVKKLLEVLQRLVDKGNTVVVIEHNL 232
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
135-198 |
1.07e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 46.36 E-value: 1.07e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644489132 135 PVGAFSRGMQQRLTIARALVN---DPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:PRK00635 806 PLSSLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM 872
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
63-198 |
1.17e-05 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 45.46 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 63 SGTVRIRGFDLEDDPEAFRARLGLVSHQSFLYDDLTARENLEFYAGLYGVADPAGRAEELLRQVDLYDRRDSPVGAFSRG 142
Cdd:pfam13304 161 LLLEDWAVLDLAADLALFPDLKELLQRLVRGLKLADLNLSDLGEGIEKSLLVDDRLRERGLILLENGGGGELPAFELSDG 240
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 143 MQQ---RLTIARALVNDPDLLLLDEPYTGLDEHAASVLRERLRALHDRRRTIVMVTHNL 198
Cdd:pfam13304 241 TKRllaLLAALLSALPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHSP 299
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
10-199 |
1.26e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 44.24 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRkafggVEALRGVSFTLDEGEFLCLFGPNGAGKSTLLK-ILATllrptSGTVRIrgfdLEDDPEAFRARLGLVS 88
Cdd:cd03238 1 LTVSGAN-----VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNeGLYA-----SGKARL----ISFLPKFSRNKLIFID 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 89 HQSFLYDdltarenlefyAGLYgvadpagraeellrqvdlYDRRDSPVGAFSRGMQQRLTIARALVNDPD--LLLLDEPY 166
Cdd:cd03238 67 QLQFLID-----------VGLG------------------YLTLGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPS 117
|
170 180 190
....*....|....*....|....*....|...
gi 644489132 167 TGLDEHAASVLRERLRALHDRRRTIVMVTHNLR 199
Cdd:cd03238 118 TGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
31-198 |
1.51e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 43.89 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 31 TLDEGEFLCLFGPNGAGKSTLLK--ILATLLRptSGTVRIRGFDLEDDPEA-FRARLGLVSHQsflyddltarenlefya 107
Cdd:cd03227 17 TFGEGSLTIITGPNGSGKSTILDaiGLALGGA--QSATRRRSGVKAGCIVAaVSAELIFTRLQ----------------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 108 glygvadpagraeellrqvdlydrrdspvgaFSRGMQQRLTIARAL----VNDPDLLLLDEPYTGLDEHAASVLRERLRA 183
Cdd:cd03227 78 -------------------------------LSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQALAEAILE 126
|
170
....*....|....*
gi 644489132 184 LHDRRRTIVMVTHNL 198
Cdd:cd03227 127 HLVKGAQVIVITHLP 141
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
10-80 |
3.50e-05 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 43.83 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 10 LTVEGLRkafggveALRGVSFTLDEGEFLCLF-GPNGAGKSTLLKILATLLRPTSG--------TVRIRGFDLEDDPEAF 80
Cdd:COG3950 6 LTIENFR-------GFEDLEIDFDNPPRLTVLvGENGSGKTTLLEAIALALSGLLSrlddvkfrKLLIRNGEFGDSAKLI 78
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
34-198 |
9.44e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 41.79 E-value: 9.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 34 EGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDPEafrarlglvshqsflyddltarenlefyaglygva 113
Cdd:cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQ----------------------------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 114 dpagraeellrQVDLydrrdspvgafSRGMQQRLTIARALVNDPDLLLLDEPYTGLDE----HAASVLRerlRALHDRRR 189
Cdd:cd03222 69 -----------YIDL-----------SGGELQRVAIAAALLRNATFYLFDEPSAYLDIeqrlNAARAIR---RLSEEGKK 123
|
....*....
gi 644489132 190 TIVMVTHNL 198
Cdd:cd03222 124 TALVVEHDL 132
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
29-196 |
1.47e-04 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 41.44 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 29 SFTLDEGEFLcLFGPNGAGKSTllkILATLLRPTSGTVRIRGFDLEDDPEAFR--ARLGLVShqsflyddltarenLEFY 106
Cdd:cd03240 17 EIEFFSPLTL-IVGQNGAGKTT---IIEALKYALTGELPPNSKGGAHDPKLIRegEVRAQVK--------------LAFE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 107 aglygvaDPAGRAEELLRQVDLYD------RRDS------PVGAFSRGmQQ-------RLTIARALVNDPDLLLLDEPYT 167
Cdd:cd03240 79 -------NANGKKYTITRSLAILEnvifchQGESnwplldMRGRCSGG-EKvlasliiRLALAETFGSNCGILALDEPTT 150
|
170 180 190
....*....|....*....|....*....|.
gi 644489132 168 GLD-EHAASVLRERLRA-LHDRRRTIVMVTH 196
Cdd:cd03240 151 NLDeENIEESLAEIIEErKSQKNFQLIVITH 181
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
25-217 |
1.95e-04 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 41.43 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGTVRIRGFDLEDDP-EAFRARLGLVSHQSFLYDDlTARENL 103
Cdd:cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPlHTLRSRLSIILQDPILFSG-SIRFNL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 efyaglygvaDPA-----GRAEELLRQVDLYDRRDSPVGA-----------FSRGMQQRLTIARALVNDPDLLLLDEPYT 167
Cdd:cd03288 116 ----------DPEckctdDRLWEALEIAQLKNMVKSLPGGldavvteggenFSVGQRQLFCLARAFVRKSSILIMDEATA 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 644489132 168 GLDEHAASVLRE-RLRALHDrrRTIVMVTHNLRRgIESATRLGILARGRLV 217
Cdd:cd03288 186 SIDMATENILQKvVMTAFAD--RTVVTIAHRVST-ILDADLVLVLSRGILV 233
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
28-170 |
3.65e-04 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 41.07 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 28 VSFTLDEGEFLCLFGPNGAGKSTLLK-ILATLLRPTSGTVRIRG--FDLEDDPEAFRARLGLVSH---QSFLYDDLTARE 101
Cdd:PRK13549 281 VSFSLRRGEILGIAGLVGAGRTELVQcLFGAYPGRWEGEIFIDGkpVKIRNPQQAIAQGIAMVPEdrkRDGIVPVMGVGK 360
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644489132 102 N-----LEFYAGLyGVADPAGRAEELLRQVD-LYDRRDSP---VGAFSRGMQQRLTIARALVNDPDLLLLDEPYTGLD 170
Cdd:PRK13549 361 NitlaaLDRFTGG-SRIDDAAELKTILESIQrLKVKTASPelaIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
27-63 |
4.60e-04 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 37.58 E-value: 4.60e-04
10 20 30
....*....|....*....|....*....|....*..
gi 644489132 27 GVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTS 63
Cdd:pfam13555 14 GHTIPIDPRGNTLLTGPSGSGKSTLLDAIQTLLVPAK 50
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
10-75 |
5.66e-04 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 39.79 E-value: 5.66e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644489132 10 LTVEGLRKafggveaLRGVSFTLDEGEFLcLFGPNGAGKSTLLKILATLL---RPTSGTVRIRGFDLED 75
Cdd:pfam13476 1 LTIENFRS-------FRDQTIDFSKGLTL-ITGPNGSGKTTILDAIKLALygkTSRLKRKSGGGFVKGD 61
|
|
| PRK15177 |
PRK15177 |
Vi polysaccharide ABC transporter ATP-binding protein VexC; |
25-216 |
6.92e-04 |
|
Vi polysaccharide ABC transporter ATP-binding protein VexC;
Pssm-ID: 185099 [Multi-domain] Cd Length: 213 Bit Score: 39.66 E-value: 6.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLLKILATLLRPTSGT-VRIRGFDLEddpeafrarlglVSHQSFLYDDLTARENL 103
Cdd:PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDfIGLRGDALP------------LGANSFILPGLTGEENA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 104 EFYAGLYGV-ADPAGRAEELLRQVD-LYDRRdspVGAFSRGMQQRLTIARALVNDPDLLLLD-EPYTGldEHAASVLRER 180
Cdd:PRK15177 71 RMMASLYGLdGDEFSHFCYQLTQLEqCYTDR---VSEYSVTMKTHLAFAINLLLPCRLYIADgKLYTG--DNATQLRMQA 145
|
170 180 190
....*....|....*....|....*....|....*.
gi 644489132 181 LRALHDRRRTIVMVTHNLRRGIESATRLGILARGRL 216
Cdd:PRK15177 146 ALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKI 181
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
25-170 |
9.36e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 39.77 E-value: 9.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 25 LRGVSFTLDEGEFLCLFGPNGAGKSTLlkilATLL------RPTSGTVRIRG--FDLEDDPEAF----------RARLGL 86
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTEL----AMSVfgrsygRNISGTVFKDGkeVDVSTVSDAIdaglayvtedRKGYGL 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 87 VshqsfLYDDLtaRENLEFyAGLYGVADpAG---RAEELLRQVDlYDRR--------DSPVGAFSRGMQQRLTIARALVN 155
Cdd:NF040905 352 N-----LIDDI--KRNITL-ANLGKVSR-RGvidENEEIKVAEE-YRKKmniktpsvFQKVGNLSGGNQQKVVLSKWLFT 421
|
170
....*....|....*
gi 644489132 156 DPDLLLLDEPYTGLD 170
Cdd:NF040905 422 DPDVLILDEPTRGID 436
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
17-196 |
2.66e-03 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 38.02 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 17 KAFGGVEALRGVSFT-LDEGEFLCLFGPNGAGKSTLLK-ILATLLRPTSGTVRIRGFDLEDDPEAFRARLGLVSHQSFLY 94
Cdd:cd03279 9 KNFGPFREEQVIDFTgLDNNGLFLICGPTGAGKSTILDaITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 95 DDLTARENLEFYAGLYGVADPAGRAEELL-RQVDLYDRRDSPVGAFSrgmqQRLTIARALVNDP----DLLLLDEPYTGL 169
Cdd:cd03279 89 YRVERSRGLDYDQFTRIVLLPQGEFDRFLaRPVSTLSGGETFLASLS----LALALSEVLQNRGgarlEALFIDEGFGTL 164
|
170 180
....*....|....*....|....*..
gi 644489132 170 DEHAASVLRERLRALHDRRRTIVMVTH 196
Cdd:cd03279 165 DPEALEAVATALELIRTENRMVGVISH 191
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
32-196 |
4.28e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 37.57 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 32 LDEGEFLCLFGPNGAGKSTLLKILATLL---------RPTSGTVRIrgFDLEDDPEAFRARLglvshqsflyDDLTAREN 102
Cdd:COG3598 10 LPEGGVTLLAGPPGTGKSFLALQLAAAVaaggpwlgrRVPPGKVLY--LAAEDDRGELRRRL----------KALGADLG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 103 LEFyaglygvadpagraEELLRQVDLYDRRdspvGAFSRGMQQRLTIARALVNDPDLLLLDeP---YTGLDEHAASVLRE 179
Cdd:COG3598 78 LPF--------------ADLDGRLRLLSLA----GDLDDTDDLEALERAIEEEGPDLVVID-PlarVFGGDENDAEEMRA 138
|
170 180
....*....|....*....|.
gi 644489132 180 ---RLRALHDRRR-TIVMVTH 196
Cdd:COG3598 139 flnPLDRLAERTGaAVLLVHH 159
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
37-60 |
5.53e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 37.37 E-value: 5.53e-03
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
32-201 |
6.07e-03 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 36.59 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 32 LDEGEFLCLFGPNGAGKSTLLKILA-----------TLLRPTSGTVRIrgFDLEDDPEAFRARLglvshqsflyddLTAR 100
Cdd:pfam13481 30 LPAGGLGLLAGAPGTGKTTLALDLAaavatgkpwlgGPRVPEQGKVLY--VSAEGPADELRRRL------------RAAG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644489132 101 ENLEFYAGLYGVadpagRAEELLRQVDLyDRRDSPVGAFSRGMQQRLTiaraLVNDPDLLLLD--EPYTGLDEHAASVLR 178
Cdd:pfam13481 96 ADLDLPARLLFL-----SLVESLPLFFL-DRGGPLLDADVDALEAALE----EVEDPDLVVIDplARALGGDENSNSDVG 165
|
170 180
....*....|....*....|....*.
gi 644489132 179 ---ERLRALHDRRRTIVMVTHNLRRG 201
Cdd:pfam13481 166 rlvKALDRLARRTGATVLLVHHVGKD 191
|
|
| |
