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Conserved domains on  [gi|64311317|gb|AAY41316|]
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NADH dehydrogenase subunit 3, partial (mitochondrion) [Pachyornis elephantopus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009571)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-79 7.41e-32

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 106.89  E-value: 7.41e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311317    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLGLAYEWMQG 79
Cdd:MTH00113  31 NEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILTLLTLGLIYEWLQG 109
 
Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-79 7.41e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 106.89  E-value: 7.41e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311317    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLGLAYEWMQG 79
Cdd:MTH00113  31 NEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILTLLTLGLIYEWLQG 109
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
2-49 2.19e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 77.08  E-value: 2.19e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:pfam00507 15 EKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAV 60
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-49 3.24e-16

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 67.07  E-value: 3.24e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 64311317   2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:COG0838  37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAV 82
 
Name Accession Description Interval E-value
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-79 7.41e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 106.89  E-value: 7.41e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311317    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLGLAYEWMQG 79
Cdd:MTH00113  31 NEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILTLLTLGLIYEWLQG 109
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-79 1.37e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 106.16  E-value: 1.37e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311317    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLGLAYEWMQG 79
Cdd:MTH00136  32 HEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLIYEWLQG 110
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-79 1.78e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 105.85  E-value: 1.78e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64311317    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLGLAYEWMQG 79
Cdd:MTH00069  30 SEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILILLTLGLIYEWIQG 108
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-78 3.62e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 105.02  E-value: 3.62e-31
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311317    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLGLAYEWMQ 78
Cdd:MTH00106  31 SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQ 108
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 2-79 6.58e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 89.27  E-value: 6.58e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLGLAYEWMQG 79
Cdd:MTH00042  33 EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLIILTIGLVYEWVNG 110
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-79 3.00e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 79.82  E-value: 3.00e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLGLAYEWMQG 79
Cdd:MTH00161  32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQG 109
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 2-79 3.09e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 79.90  E-value: 3.09e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLGLAYEWMQG 79
Cdd:MTH00148  34 EKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSLFIFLLILILGLFHEWNEG 111
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 2-48 7.92e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 78.79  E-value: 7.92e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWA 48
Cdd:MTH00203  33 EKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
2-49 2.19e-20

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 77.08  E-value: 2.19e-20
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:pfam00507 15 EKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAV 60
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 2-79 3.67e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 74.64  E-value: 3.67e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLPQPLLTLLWTSTILLLLTLGLAYEWMQG 79
Cdd:MTH00202  34 EKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEG 111
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 2-46 1.02e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 68.35  E-value: 1.02e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 46
Cdd:MTH00012  34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVP 78
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-49 3.24e-16

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 67.07  E-value: 3.24e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 64311317   2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:COG0838  37 EKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAV 82
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 2-49 8.11e-16

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 66.04  E-value: 8.11e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:PRK06602  40 EKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAV 85
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-44 8.63e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 66.27  E-value: 8.63e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 64311317    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLP 44
Cdd:MTH00055  36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFP 79
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 2-44 3.50e-13

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 59.30  E-value: 3.50e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLP 44
Cdd:MTH00018  32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFP 74
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 1-79 3.15e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 54.55  E-value: 3.15e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64311317    1 TEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAIQLPQPLLTLLWTSTILLLLTLG-LAYEWMQG 79
Cdd:MTH00030  41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLFSFWIVYTFLIVLAIgLAYEWIKG 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 2-49 2.24e-07

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 44.59  E-value: 2.24e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 64311317    2 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAM 84
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 3-43 4.39e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 41.03  E-value: 4.39e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 64311317    3 KLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLL 43
Cdd:MTH00092  34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
3-49 9.96e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 40.42  E-value: 9.96e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 64311317    3 KLSPYECGFDPLGSARlPFSIRFFLVAILFLLFDLEIALLlpLPWAI 49
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAV 90
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 5-46 1.87e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.80  E-value: 1.87e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 64311317    5 SPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 46
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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