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Conserved domains on  [gi|643015278|gb|AIA84218|]
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Glyco_hydro_17, partial [uncultured Lachancea]

Protein Classification

glycoside hydrolase family protein( domain architecture ID 581038)

glycoside hydrolase family protein may catalyze the hydrolysis of glycosidic bonds in complex sugars

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_hydro super family cl23725
Glycosyl hydrolases; A functionally diverse superfamily containing glycosyl hydrolase families ...
 4-84 1.02e-22

Glycosyl hydrolases; A functionally diverse superfamily containing glycosyl hydrolase families 1,5,10,17,44,72, and others.


The actual alignment was detected with superfamily member pfam00332:

Pssm-ID: 474034  Cd Length: 309  Bit Score: 88.32  E-value: 1.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643015278    4 LVDGGNADVIKEAD--VVYANA-----FSYWQSQAMDN--ASFSFFDDIMQAMQAIQTVKGTTDINFWVGETGWPTEGS- 73
Cdd:pfam00332 163 FLAGTNSPLLVNIYpyFVYSNNnvsldYALFQGQSQVNglAYYNLFDAILDSVYFAQEKLGGTDIEIWVSETGWPSDGHp 242

                          90
                  ....*....|...
gi 643015278   74 --NYGAAVPSVSN 84
Cdd:pfam00332 243 gaTLENAATYVRN 255
 
Name Accession Description Interval E-value
Glyco_hydro_17 pfam00332
Glycosyl hydrolases family 17;
4-84 1.02e-22

Glycosyl hydrolases family 17;


Pssm-ID: 366033  Cd Length: 309  Bit Score: 88.32  E-value: 1.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643015278    4 LVDGGNADVIKEAD--VVYANA-----FSYWQSQAMDN--ASFSFFDDIMQAMQAIQTVKGTTDINFWVGETGWPTEGS- 73
Cdd:pfam00332 163 FLAGTNSPLLVNIYpyFVYSNNnvsldYALFQGQSQVNglAYYNLFDAILDSVYFAQEKLGGTDIEIWVSETGWPSDGHp 242

                          90
                  ....*....|...
gi 643015278   74 --NYGAAVPSVSN 84
Cdd:pfam00332 243 gaTLENAATYVRN 255
Scw11 COG5309
Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];
9-84 1.10e-09

Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];


Pssm-ID: 444107  Cd Length: 512  Bit Score: 52.72  E-value: 1.10e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 643015278   9 NADVIKEADVVYANAFSYWQSQAMDNAsfsfFDDIMQAMQAIQTVKGTTDInfWVGETGWPTEGSNYGAAVPSVSN 84
Cdd:COG5309  178 HPELADAVDFITIHILPYWEGVPIERA----LDYAKDRYDEVRAAFPGKPI--IIGETGWPSAGRQRGGAVPSEVN 247
 
Name Accession Description Interval E-value
Glyco_hydro_17 pfam00332
Glycosyl hydrolases family 17;
4-84 1.02e-22

Glycosyl hydrolases family 17;


Pssm-ID: 366033  Cd Length: 309  Bit Score: 88.32  E-value: 1.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 643015278    4 LVDGGNADVIKEAD--VVYANA-----FSYWQSQAMDN--ASFSFFDDIMQAMQAIQTVKGTTDINFWVGETGWPTEGS- 73
Cdd:pfam00332 163 FLAGTNSPLLVNIYpyFVYSNNnvsldYALFQGQSQVNglAYYNLFDAILDSVYFAQEKLGGTDIEIWVSETGWPSDGHp 242

                          90
                  ....*....|...
gi 643015278   74 --NYGAAVPSVSN 84
Cdd:pfam00332 243 gaTLENAATYVRN 255
Scw11 COG5309
Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];
9-84 1.10e-09

Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism];


Pssm-ID: 444107  Cd Length: 512  Bit Score: 52.72  E-value: 1.10e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 643015278   9 NADVIKEADVVYANAFSYWQSQAMDNAsfsfFDDIMQAMQAIQTVKGTTDInfWVGETGWPTEGSNYGAAVPSVSN 84
Cdd:COG5309  178 HPELADAVDFITIHILPYWEGVPIERA----LDYAKDRYDEVRAAFPGKPI--IIGETGWPSAGRQRGGAVPSEVN 247
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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