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Conserved domains on  [gi|640351335|ref|WP_024873571|]
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copper-binding protein [Tolumonas lignilytica]

Protein Classification

CusF family protein( domain architecture ID 11475644)

CusF family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CusF COG5569
Periplasmic Cu and Ag efflux protein CusF [Inorganic ion transport and metabolism];
1-85 1.44e-14

Periplasmic Cu and Ag efflux protein CusF [Inorganic ion transport and metabolism];


:

Pssm-ID: 444311  Cd Length: 101  Bit Score: 63.47  E-value: 1.44e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640351335   1 MKNTFVRFAAVAALSLAALSSQAAVDTYKAHGSVLAVNAADQTVTVKQDAVTELGWPARTVTYNADGSNVLKGVTVGQTV 80
Cdd:COG5569    1 MKKLLAAALALAASDGAAAAAAAAAATAEAEGTVKAVDAAAGKVTIAHGPIPALGWPAMTMDFKVADPALLKGLKVGDKV 80


                 ....*
gi 640351335  81 DVQFT 85
Cdd:COG5569   81 RFEFE 85
 
Name Accession Description Interval E-value
CusF COG5569
Periplasmic Cu and Ag efflux protein CusF [Inorganic ion transport and metabolism];
1-85 1.44e-14

Periplasmic Cu and Ag efflux protein CusF [Inorganic ion transport and metabolism];


Pssm-ID: 444311  Cd Length: 101  Bit Score: 63.47  E-value: 1.44e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640351335   1 MKNTFVRFAAVAALSLAALSSQAAVDTYKAHGSVLAVNAADQTVTVKQDAVTELGWPARTVTYNADGSNVLKGVTVGQTV 80
Cdd:COG5569    1 MKKLLAAALALAASDGAAAAAAAAAATAEAEGTVKAVDAAAGKVTIAHGPIPALGWPAMTMDFKVADPALLKGLKVGDKV 80


                 ....*
gi 640351335  81 DVQFT 85
Cdd:COG5569   81 RFEFE 85
CusF_Ec pfam11604
Copper binding periplasmic protein CusF; CusF is a periplasmic protein involved in copper and ...
 32-85 1.68e-10

Copper binding periplasmic protein CusF; CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein.


Pssm-ID: 463306  Cd Length: 68  Bit Score: 52.20  E-value: 1.68e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 640351335   32 GSVLAVNAADQTVTVKQDAVTELGWPARTVTYNADGSNVLKGVTVGQTVDVQFT 85
Cdd:pfam11604   1 GVVKKVDAAAGTVTLSHGPIPALGWPAMTMDFKVADPALLAGLKPGDKVRFEFE 54
 
Name Accession Description Interval E-value
CusF COG5569
Periplasmic Cu and Ag efflux protein CusF [Inorganic ion transport and metabolism];
1-85 1.44e-14

Periplasmic Cu and Ag efflux protein CusF [Inorganic ion transport and metabolism];


Pssm-ID: 444311  Cd Length: 101  Bit Score: 63.47  E-value: 1.44e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 640351335   1 MKNTFVRFAAVAALSLAALSSQAAVDTYKAHGSVLAVNAADQTVTVKQDAVTELGWPARTVTYNADGSNVLKGVTVGQTV 80
Cdd:COG5569    1 MKKLLAAALALAASDGAAAAAAAAAATAEAEGTVKAVDAAAGKVTIAHGPIPALGWPAMTMDFKVADPALLKGLKVGDKV 80


                 ....*
gi 640351335  81 DVQFT 85
Cdd:COG5569   81 RFEFE 85
CusF_Ec pfam11604
Copper binding periplasmic protein CusF; CusF is a periplasmic protein involved in copper and ...
 32-85 1.68e-10

Copper binding periplasmic protein CusF; CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein.


Pssm-ID: 463306  Cd Length: 68  Bit Score: 52.20  E-value: 1.68e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 640351335   32 GSVLAVNAADQTVTVKQDAVTELGWPARTVTYNADGSNVLKGVTVGQTVDVQFT 85
Cdd:pfam11604   1 GVVKKVDAAAGTVTLSHGPIPALGWPAMTMDFKVADPALLAGLKPGDKVRFEFE 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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