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Conserved domains on  [gi|635309260|emb|CDN91121|]
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NADH-quinone oxidoreductase subunit A [Agrobacterium tumefaciens]

Protein Classification

NADH-quinone oxidoreductase subunit A( domain architecture ID 10012780)

NADH-quinone oxidoreductase subunit A (NuoA) is part of the membrane domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

EC:  1.6.5.9
Gene Ontology:  GO:0048038|GO:0016655|GO:0005886
PubMed:  23417064|24059520

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 44-164 4.07e-68

NADH:ubiquinone oxidoreductase subunit A; Validated


:

Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 202.40  E-value: 4.07e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  44 MTELLSSYIPIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFL 123
Cdd:PRK06602   1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 635309260 124 FPWAVSFGEMGWFGFWSMMVFLLVLTIGFIYEWKKGALEWA 164
Cdd:PRK06602  81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 44-164 4.07e-68

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 202.40  E-value: 4.07e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  44 MTELLSSYIPIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFL 123
Cdd:PRK06602   1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 635309260 124 FPWAVSFGEMGWFGFWSMMVFLLVLTIGFIYEWKKGALEWA 164
Cdd:PRK06602  81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 47-163 1.06e-53

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 165.68  E-value: 1.06e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  47 LLSSYIPIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPW 126
Cdd:COG0838    1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 635309260 127 AVSFGEMGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:COG0838   81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
69-162 1.43e-46

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 146.80  E-value: 1.43e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260   69 LIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGEMGWFGFWSMMVFLLVL 148
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 635309260  149 TIGFIYEWKKGALE 162
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 44-164 4.07e-68

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 202.40  E-value: 4.07e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  44 MTELLSSYIPIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFL 123
Cdd:PRK06602   1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 635309260 124 FPWAVSFGEMGWFGFWSMMVFLLVLTIGFIYEWKKGALEWA 164
Cdd:PRK06602  81 FPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 47-163 1.06e-53

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 165.68  E-value: 1.06e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  47 LLSSYIPIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPW 126
Cdd:COG0838    1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 635309260 127 AVSFGEMGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:COG0838   81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
69-162 1.43e-46

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 146.80  E-value: 1.43e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260   69 LIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGEMGWFGFWSMMVFLLVL 148
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 635309260  149 TIGFIYEWKKGALE 162
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 54-163 1.81e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 122.13  E-value: 1.81e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  54 IAIFIGIALVIGLALLI--APFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFG 131
Cdd:MTH00055   6 LGIFILLLFSIGLSTVIsgASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYN 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 635309260 132 EMGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:MTH00055  86 QIGLFGFWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 54-163 2.56e-34

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 116.31  E-value: 2.56e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  54 IAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGEM 133
Cdd:MTH00018   3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                         90       100       110
                 ....*....|....*....|....*....|
gi 635309260 134 GWFGFWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:MTH00018  83 APFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 54-164 1.92e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 106.62  E-value: 1.92e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  54 IAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLF--PWAVSFG 131
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 635309260 132 EMGWFGFWSMMVfLLVLTIGFIYEWKKGALEWA 164
Cdd:MTH00069  82 TPTNTLFWSTLI-LILLTLGLIYEWIQGGLEWA 113
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 48-163 1.46e-27

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 99.36  E-value: 1.46e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  48 LSSYIPIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDAR--MKFDIRFYLVSILFIIFDLEVAFLFP 125
Cdd:PRK07928   1 MNVYIPILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAggGRFPVKYYLTAMLFIVFDIEIVFLYP 80

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 635309260 126 WAVSFGEMGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:PRK07928  81 WAVSFDALGVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 53-164 1.56e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 99.22  E-value: 1.56e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  53 PIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFL--FPWAVSF 130
Cdd:MTH00136   3 LITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpLPWGDQL 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 635309260 131 GEMGWFGFWSMMVfLLVLTIGFIYEWKKGALEWA 164
Cdd:MTH00136  83 PSPLLTFFWATAV-LILLTLGLIYEWLQGGLEWA 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 60-164 2.26e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 98.80  E-value: 2.26e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  60 IALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFP--WAVSFGEMGWFG 137
Cdd:MTH00113   9 ISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINLTTPTTTL 88

                         90       100
                 ....*....|....*....|....*..
gi 635309260 138 FWSMMVFLLvLTIGFIYEWKKGALEWA 164
Cdd:MTH00113  89 TWATIILTL-LTLGLIYEWLQGGLEWA 114
ndhC CHL00022
NADH dehydrogenase subunit 3
 47-163 2.71e-27

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 98.91  E-value: 2.71e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  47 LLSSYIPIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPW 126
Cdd:CHL00022   3 LLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPW 82

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 635309260 127 AVSFGEMGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:CHL00022  83 AMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEW 119
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 60-163 6.94e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 97.70  E-value: 6.94e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  60 IALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGEMGWFGFW 139
Cdd:MTH00030  19 ILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFW 98

                         90       100
                 ....*....|....*....|....
gi 635309260 140 SMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:MTH00030  99 IVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
49-163 4.31e-26

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 95.97  E-value: 4.31e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  49 SSYIPIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAV 128
Cdd:PRK07756   7 NSYMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAV 86

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 635309260 129 SFGEMGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:PRK07756  87 AYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
84-163 1.24e-25

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 94.73  E-value: 1.24e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  84 KLSAFECGFNAFDDARmKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGEMGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 56-164 1.61e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 94.15  E-value: 1.61e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  56 IFIGIALVIGLALLIAPFAVAYKAP-DPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGEMG 134
Cdd:MTH00148   6 LSLLFALILSPVLLLLGLVLSKRSYsDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSF 85

                         90       100       110
                 ....*....|....*....|....*....|.
gi 635309260 135 WFGFWSM-MVFLLVLTIGFIYEWKKGALEWA 164
Cdd:MTH00148  86 SVWSLTSlFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 54-163 1.89e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 93.69  E-value: 1.89e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  54 IAIFIGIALVIGLALLIAPFAVAYKAP-DPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFgE 132
Cdd:MTH00161   2 ILIILLIILLISIILMILASLLSKKSImDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIF-K 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 635309260 133 MGWFGFWSMM--VFLLVLTIGFIYEWKKGALEW 163
Cdd:MTH00161  81 TSNMMSWLITssFFILILLLGLYYEWNQGALEW 113
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 54-163 7.29e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 92.27  E-value: 7.29e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  54 IAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSfGEM 133
Cdd:MTH00203   4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS-NQL 82

                         90       100       110
                 ....*....|....*....|....*....|
gi 635309260 134 GWFGFWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:MTH00203  83 SSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 53-164 7.85e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 92.35  E-value: 7.85e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  53 PIAIFIGIALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFP--WAVSF 130
Cdd:MTH00042   3 NLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPlpPATLI 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 635309260 131 GEMGWFGFWSmMVFLLVLTIGFIYEWKKGALEWA 164
Cdd:MTH00042  83 TNPSTLLPIS-LIFLIILTIGLVYEWVNGGLEWA 115
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 61-164 2.49e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 78.11  E-value: 2.49e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  61 ALVIGLALLIAPFAVAYKA-PDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVS-FGEMGWFGF 138
Cdd:MTH00202  11 SILISSLLFLVSWMLSFRSlMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVlKSSWSKGGL 90

                         90       100
                 ....*....|....*....|....*.
gi 635309260 139 WSMMVFLLVLTIGFIYEWKKGALEWA 164
Cdd:MTH00202  91 LGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 55-164 3.25e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 77.98  E-value: 3.25e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  55 AIFIGIALVIGLALLIAPFAVAYKAP-DPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLFPWAVSFGEM 133
Cdd:MTH00012   5 MIPMMISLILPPLVLGAAWVLAARSTaDREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTS 84

                         90       100       110
                 ....*....|....*....|....*....|..
gi 635309260 134 GWFG-FWSMMVFLLVLTIGFIYEWKKGALEWA 164
Cdd:MTH00012  85 TSKTvVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 83-164 1.04e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 68.81  E-value: 1.04e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  83 EKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLF--PWAVSFGEMGWFGFWSMMvFLLVLTIGFIYEWKKGA 160
Cdd:MTH00106  32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLNTMLTMALL-LISLLALSLAYEWTQKG 110


                 ....
gi 635309260 161 LEWA 164
Cdd:MTH00106 111 LEWT 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 47-163 4.60e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 54.82  E-value: 4.60e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  47 LLSSYIPIAIFIGI---ALVIGLALLIAPFAVAYK----------------------APDPEKLSAFECGFNAFDDARMK 101
Cdd:PRK06432   1 MLDGYIPLLIIIVViplALIFGFKILPALGANRYGdnrislktedilkkaayedtppGSDQSYLEPYESGEVAREIWGGP 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 635309260 102 FDIRFYLVSILFIIFDLEVAFLFPWAVSFGEMGWFGFWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:PRK06432  81 SINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 60-163 1.61e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 47.20  E-value: 1.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  60 IALVIGLALLIAPFAVAYKAPDPEKLSAFECGFNAFDDARMKFDIRFYLVSILFIIFDLE-VAFLFPWAVSFGEMgwFGF 138
Cdd:MTH00092  10 FTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEiVMFLGLLVSDFSSL--ISF 87

                         90       100
                 ....*....|....*....|....*
gi 635309260 139 WSMMVFLLVltiGFIYEWKKGALEW 163
Cdd:MTH00092  88 FMLMIFIFF---GFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 86-163 1.92e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 41.81  E-value: 1.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 635309260  86 SAFECGFNAFDDARMKFDIRFYLVSILFIIFDLEVAFLfpwaVSFGEMG-WFG-FWSMMVFLLVLTIGFIYEWKKGALEW 163
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLL----LNMPFQGlLFYnFWYYYFFLLLLFLGFVVELFSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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