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Conserved domains on  [gi|6324343|ref|NP_014413|]
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acetyl-CoA carboxylase ACC1 [Saccharomyces cerevisiae S288C]

Protein Classification

acetyl-CoA carboxylase( domain architecture ID 11418428)

acetyl-CoA carboxylase carries out three functions: biotin carboxyl carrier protein, biotin carboxylase and carboxyltransferase; it is involved in the synthesis of very-long-chain fatty acid synthesis which is required to maintain a functional nuclear envelope

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ACC_central pfam08326
Acetyl-CoA carboxylase, central region; The region featured in this family is found in various ...
768-1479 0e+00

Acetyl-CoA carboxylase, central region; The region featured in this family is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (pfam01039). This enzyme (EC:6.4.1.2) is involved in the synthesis of long-chain fatty acids, as it catalyzes the rate-limiting step in this process.


:

Pssm-ID: 462429  Cd Length: 718  Bit Score: 1139.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     768 TLDDPSKVKHALPFEGMLPDFGSPVIEGTKPAYKFKSLVSTLENILKGYDNQVIMNASLQQLIEVLRNPKLPYSEWKLHI 847
Cdd:pfam08326    1 ALDDPSRVKHAQPFEGQLPELGPPTVVGNKPHQRFAALLNILENILAGYDNQVIMNETLKDLIEVLRDPELPYLEWQEQL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     848 SALHSRLPAKLDEQMEELVARSLRRGAVFPARQLSKLIDMAVKNPEYNPDK-LLGAVVEPLADIAHKYSNGLEAHEHSIF 926
Cdd:pfam08326   81 SALSGRIPAKLEASLRQLVERAHSRSAEFPAKQLRKILDKFLAELVLKADRdLFEATLAPLVDLVERYRNGLKGHEYSVF 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     927 VHFLEEYYEVEKLFNGPNVREENIILKLRDENPKDLDKVALTVLSHSKVSAKNNLILAILKHYQPLCKLSSKVSAIFSTP 1006
Cdd:pfam08326  161 ASLLEEYYDVEKLFSGGNVREEDVILKLRDENKDDLDKVVDIVLSHSRVSSKNKLILALLDHYRPNCPNVSNVAKELRPV 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1007 LQHIVELESKATAKVALQAREILIQGALPSVKERTEQIEHILKSSVVKVAYGSSNPKRSEPDLNILKDLIDSNYVVFDVL 1086
Cdd:pfam08326  241 LKKLAELESRETAKVALKAREVLIQCALPSLEERKNQMEHILKSSVVESGYGESGWKHREPSLEVLKELIDSKYTVFDVL 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1087 LQFLTHQDPVVTAAAAQVYIRRAYRAYTIGDIRVHEGVTVP-IVEWKFQLPSAAFSTF-----PTVKSKMGMNRAVSVSD 1160
Cdd:pfam08326  321 PPFFYHSDPWVSLAALEVYVRRAYRAYSLKSIQYHEGEDSPpIVSWQFQLPSSHSSEFgsplsPSSDSSPPFKRIASVSD 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1161 LSYVAN-SQSSPLREGILMAVDHLDDVDEILSQSLEVIPRHQSSSNgpapdRSGSSASLSNVANVCVASTEGFESEEEIL 1239
Cdd:pfam08326  401 LSYLVNkSEDEPLRTGAMVAFKSLDDLEEALPRALEEFPSEPEESG-----ESNSSDEPINVLNVAIRDAEGSDSDEELL 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1240 VRLREILDLNKQELINASIRRITFMFGFKDGSYPKYYTFNGP-NYNENETIRHIEPALAFQLELGRLSNFNIKPIFTDNR 1318
Cdd:pfam08326  476 ERLEEILKENKEELLAAGVRRITFIIGRKDGQYPKYFTFRGPdNYEEDPIIRHIEPALAFQLELGRLSNFDIKPVPTENR 555
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1319 NIHVYEAVSKTSPLDKRFFTRGIIRTGHIRDDISIQEYLTSEANRLMSDILDNLEV--TDTSNSDLNHIFINFIAVFDIS 1396
Cdd:pfam08326  556 QIHLYEAVGKENPTDKRFFVRAIIRPGRLRDDIPTAEYLISEAERLLNDILDALEVasIGNSNSDLNHIFLNFVPVFNVD 635
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1397 PEDVEAAFGGFLERFGKRLLRLRVSSAEIRIIIKDPQTGAPVPLRALINNVSGYVIKTEMYTEVKNAKGEWVFKSLGKPG 1476
Cdd:pfam08326  636 PEDVEEAVGGFLERFGKRLWRLRVTQAEIRIIIRDPETGPPIPLRLVITNVSGYVVKVELYREVKDDKGEWVFKSIGKPG 715

                   ...
gi 6324343    1477 SMH 1479
Cdd:pfam08326  716 PMH 718
Carboxyl_trans pfam01039
Carboxyl transferase domain; All of the members in this family are biotin dependent ...
1574-2118 0e+00

Carboxyl transferase domain; All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.


:

Pssm-ID: 426008 [Multi-domain]  Cd Length: 491  Bit Score: 621.97  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1574 PEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRgIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGF 1653
Cdd:pfam01039    1 PEHPRGKLTARERIDLLLDPGSFGELEDLFFHRATEFGRKR-IPRDGVVTGSGAVIGRAVEVVAQDFTVFGGSLGPAKGE 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1654 QYLYLtsegMETLKKfdkensvltertviNGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSV 1733
Cdd:pfam01039   80 KILRA----MEIAIK--------------TGLPLIGINDSGGARIQEGVENLRGSGKIFGRNSLASGVIPQISLIMGPCA 141
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1734 GIGAYLVRLGQRAIQVEG-QPIILTGAPAINKMLGrEVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPA 1812
Cdd:pfam01039  142 GGGAYLPALGDFVIMVEGtSPMFLTGPPVIKKVTG-EEVTSEELGGATQHMTISGVSHLTALDDEDALELIRKWLSYLPK 220
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1813 KRNM---PVPILETKDTWDRP---VDFTPTND-ETYDVRWMIEgretesgfeyGLFDKGSFFETLSGWAKGVVVGRARLG 1885
Cdd:pfam01039  221 PAPNnrePVPIVPTKDPPDRDaplVSIVPDDPkKPYDVREVIA----------GIVDEGEFFEIKPGYAKTVVTGFARLG 290
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1886 GIPLGVIGVETRtvenlipadpanpnsaetliQEPGqVWHPNSAFKTAQAINDFNNgEQLPMMILANWRGFSGGQRDMFN 1965
Cdd:pfam01039  291 GIPVGVVANQPR--------------------VGAG-VLFPDSADKAARFIRDCDA-FNLPLVILADVPGFLPGQRQEYG 348
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1966 EVLKYGSFIVDALVDYKQPIIIYIPPtgELRGGSWVVVDPTINADQMeMYADVNARAGVLEPQGMVGIKFRREKLLDTMN 2045
Cdd:pfam01039  349 GILKHGAKLLYALAEATVPKITVIPR--KAYGGAYVVMDSKINGADI-NFAWPTARIAVMGPEGAVEIKFRKEKAAAEMR 425
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6324343    2046 RLDDKyrelrsqlsnkslapevhQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEA 2118
Cdd:pfam01039  426 GKDLA------------------ATRKQKIAEYEEELSPPYVAAARGFADAVIDPGRTRAKLVIALAALWTKP 480
PccA super family cl44129
Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism];
59-588 4.56e-127

Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism];


The actual alignment was detected with superfamily member COG4770:

Pssm-ID: 443802 [Multi-domain]  Cd Length: 466  Bit Score: 408.63  E-value: 4.56e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDleANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:COG4770    2 FKKVLIANRGEIAVRIIRTCRELGIRT---------VAVYSDAD--RDALHVRLADEAVCIGPAPAAESYLNIDAIIAAA 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   139 ERADVDAVWAGWGHASENPLLPEKLSqsKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSgtgvdtvhvdektg 218
Cdd:COG4770   71 KATGADAIHPGYGFLSENADFAEACE--DAGIVFIGPSPEAIRAMGDKIAAKKLMKAAGVPVVPGS-------------- 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   219 lvsvdddiyqKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE---IPGSP-IFIMKLAG 294
Cdd:COG4770  135 ----------DGPVQDAEEALAIAEEIGYPVLIKASAGGGGKGMRVVRSEEELEEAFESARREakaAFGDDrVYLEKYIE 204
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   295 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYShDDGK 374
Cdd:COG4770  205 RPRHIEVQVLADKHGNVVHLGERDCSIQRRHQKVIEEAPSPALTEELRERMGEAAVRAAKAVGYVGAGTVEFLVD-ADGN 283
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   375 FYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnphsaseidfefktqdaTKKQRRPIPKGHC 454
Cdd:COG4770  284 FYFLEMNTRLQVEHPVTEMVTGIDLVEEQIRIAAGEPL-----------------------------PFTQEDIKLRGHA 334
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   455 TACRITSEDPNDGFKPSGGTLHELNFRSSSNV---WGYFSvgnNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELS 531
Cdd:COG4770  335 IECRINAEDPARGFLPSPGTITRLRPPGGPGVrvdSGVYE---GYEIPPYYDSMIAKLIVWGPDREEAIARMRRALAEFV 411
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6324343   532 IRGdFRTTVEYLIKLLETEDFEDNTITTGWLDdliTHKMTAEKPDPTLAVICGAATK 588
Cdd:COG4770  412 IEG-VKTNIPFLRALLAHPDFRAGDVDTGFIE---RELAELLAAAAPEELALAAAMK 464
Biotin_lipoyl pfam00364
Biotin-requiring enzyme; This family covers two Prosite entries, the conserved lysine residue ...
701-767 1.31e-17

Biotin-requiring enzyme; This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognize the Glycine cleavage system H proteins.


:

Pssm-ID: 395290 [Multi-domain]  Cd Length: 73  Bit Score: 79.18  E-value: 1.31e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6324343     701 TQLRTPSPGKLV-----KFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIVQLLKQP-GSTIVAGDIMAIM 767
Cdd:pfam00364    1 TEIKSPMIGESVregvvEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPeGDTVEVGDPLAKI 73
 
Name Accession Description Interval E-value
ACC_central pfam08326
Acetyl-CoA carboxylase, central region; The region featured in this family is found in various ...
768-1479 0e+00

Acetyl-CoA carboxylase, central region; The region featured in this family is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (pfam01039). This enzyme (EC:6.4.1.2) is involved in the synthesis of long-chain fatty acids, as it catalyzes the rate-limiting step in this process.


Pssm-ID: 462429  Cd Length: 718  Bit Score: 1139.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     768 TLDDPSKVKHALPFEGMLPDFGSPVIEGTKPAYKFKSLVSTLENILKGYDNQVIMNASLQQLIEVLRNPKLPYSEWKLHI 847
Cdd:pfam08326    1 ALDDPSRVKHAQPFEGQLPELGPPTVVGNKPHQRFAALLNILENILAGYDNQVIMNETLKDLIEVLRDPELPYLEWQEQL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     848 SALHSRLPAKLDEQMEELVARSLRRGAVFPARQLSKLIDMAVKNPEYNPDK-LLGAVVEPLADIAHKYSNGLEAHEHSIF 926
Cdd:pfam08326   81 SALSGRIPAKLEASLRQLVERAHSRSAEFPAKQLRKILDKFLAELVLKADRdLFEATLAPLVDLVERYRNGLKGHEYSVF 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     927 VHFLEEYYEVEKLFNGPNVREENIILKLRDENPKDLDKVALTVLSHSKVSAKNNLILAILKHYQPLCKLSSKVSAIFSTP 1006
Cdd:pfam08326  161 ASLLEEYYDVEKLFSGGNVREEDVILKLRDENKDDLDKVVDIVLSHSRVSSKNKLILALLDHYRPNCPNVSNVAKELRPV 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1007 LQHIVELESKATAKVALQAREILIQGALPSVKERTEQIEHILKSSVVKVAYGSSNPKRSEPDLNILKDLIDSNYVVFDVL 1086
Cdd:pfam08326  241 LKKLAELESRETAKVALKAREVLIQCALPSLEERKNQMEHILKSSVVESGYGESGWKHREPSLEVLKELIDSKYTVFDVL 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1087 LQFLTHQDPVVTAAAAQVYIRRAYRAYTIGDIRVHEGVTVP-IVEWKFQLPSAAFSTF-----PTVKSKMGMNRAVSVSD 1160
Cdd:pfam08326  321 PPFFYHSDPWVSLAALEVYVRRAYRAYSLKSIQYHEGEDSPpIVSWQFQLPSSHSSEFgsplsPSSDSSPPFKRIASVSD 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1161 LSYVAN-SQSSPLREGILMAVDHLDDVDEILSQSLEVIPRHQSSSNgpapdRSGSSASLSNVANVCVASTEGFESEEEIL 1239
Cdd:pfam08326  401 LSYLVNkSEDEPLRTGAMVAFKSLDDLEEALPRALEEFPSEPEESG-----ESNSSDEPINVLNVAIRDAEGSDSDEELL 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1240 VRLREILDLNKQELINASIRRITFMFGFKDGSYPKYYTFNGP-NYNENETIRHIEPALAFQLELGRLSNFNIKPIFTDNR 1318
Cdd:pfam08326  476 ERLEEILKENKEELLAAGVRRITFIIGRKDGQYPKYFTFRGPdNYEEDPIIRHIEPALAFQLELGRLSNFDIKPVPTENR 555
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1319 NIHVYEAVSKTSPLDKRFFTRGIIRTGHIRDDISIQEYLTSEANRLMSDILDNLEV--TDTSNSDLNHIFINFIAVFDIS 1396
Cdd:pfam08326  556 QIHLYEAVGKENPTDKRFFVRAIIRPGRLRDDIPTAEYLISEAERLLNDILDALEVasIGNSNSDLNHIFLNFVPVFNVD 635
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1397 PEDVEAAFGGFLERFGKRLLRLRVSSAEIRIIIKDPQTGAPVPLRALINNVSGYVIKTEMYTEVKNAKGEWVFKSLGKPG 1476
Cdd:pfam08326  636 PEDVEEAVGGFLERFGKRLWRLRVTQAEIRIIIRDPETGPPIPLRLVITNVSGYVVKVELYREVKDDKGEWVFKSIGKPG 715

                   ...
gi 6324343    1477 SMH 1479
Cdd:pfam08326  716 PMH 718
Carboxyl_trans pfam01039
Carboxyl transferase domain; All of the members in this family are biotin dependent ...
1574-2118 0e+00

Carboxyl transferase domain; All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.


Pssm-ID: 426008 [Multi-domain]  Cd Length: 491  Bit Score: 621.97  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1574 PEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRgIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGF 1653
Cdd:pfam01039    1 PEHPRGKLTARERIDLLLDPGSFGELEDLFFHRATEFGRKR-IPRDGVVTGSGAVIGRAVEVVAQDFTVFGGSLGPAKGE 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1654 QYLYLtsegMETLKKfdkensvltertviNGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSV 1733
Cdd:pfam01039   80 KILRA----MEIAIK--------------TGLPLIGINDSGGARIQEGVENLRGSGKIFGRNSLASGVIPQISLIMGPCA 141
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1734 GIGAYLVRLGQRAIQVEG-QPIILTGAPAINKMLGrEVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPA 1812
Cdd:pfam01039  142 GGGAYLPALGDFVIMVEGtSPMFLTGPPVIKKVTG-EEVTSEELGGATQHMTISGVSHLTALDDEDALELIRKWLSYLPK 220
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1813 KRNM---PVPILETKDTWDRP---VDFTPTND-ETYDVRWMIEgretesgfeyGLFDKGSFFETLSGWAKGVVVGRARLG 1885
Cdd:pfam01039  221 PAPNnrePVPIVPTKDPPDRDaplVSIVPDDPkKPYDVREVIA----------GIVDEGEFFEIKPGYAKTVVTGFARLG 290
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1886 GIPLGVIGVETRtvenlipadpanpnsaetliQEPGqVWHPNSAFKTAQAINDFNNgEQLPMMILANWRGFSGGQRDMFN 1965
Cdd:pfam01039  291 GIPVGVVANQPR--------------------VGAG-VLFPDSADKAARFIRDCDA-FNLPLVILADVPGFLPGQRQEYG 348
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1966 EVLKYGSFIVDALVDYKQPIIIYIPPtgELRGGSWVVVDPTINADQMeMYADVNARAGVLEPQGMVGIKFRREKLLDTMN 2045
Cdd:pfam01039  349 GILKHGAKLLYALAEATVPKITVIPR--KAYGGAYVVMDSKINGADI-NFAWPTARIAVMGPEGAVEIKFRKEKAAAEMR 425
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6324343    2046 RLDDKyrelrsqlsnkslapevhQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEA 2118
Cdd:pfam01039  426 GKDLA------------------ATRKQKIAEYEEELSPPYVAAARGFADAVIDPGRTRAKLVIALAALWTKP 480
PccA COG4770
Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism];
59-588 4.56e-127

Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism];


Pssm-ID: 443802 [Multi-domain]  Cd Length: 466  Bit Score: 408.63  E-value: 4.56e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDleANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:COG4770    2 FKKVLIANRGEIAVRIIRTCRELGIRT---------VAVYSDAD--RDALHVRLADEAVCIGPAPAAESYLNIDAIIAAA 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   139 ERADVDAVWAGWGHASENPLLPEKLSqsKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSgtgvdtvhvdektg 218
Cdd:COG4770   71 KATGADAIHPGYGFLSENADFAEACE--DAGIVFIGPSPEAIRAMGDKIAAKKLMKAAGVPVVPGS-------------- 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   219 lvsvdddiyqKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE---IPGSP-IFIMKLAG 294
Cdd:COG4770  135 ----------DGPVQDAEEALAIAEEIGYPVLIKASAGGGGKGMRVVRSEEELEEAFESARREakaAFGDDrVYLEKYIE 204
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   295 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYShDDGK 374
Cdd:COG4770  205 RPRHIEVQVLADKHGNVVHLGERDCSIQRRHQKVIEEAPSPALTEELRERMGEAAVRAAKAVGYVGAGTVEFLVD-ADGN 283
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   375 FYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnphsaseidfefktqdaTKKQRRPIPKGHC 454
Cdd:COG4770  284 FYFLEMNTRLQVEHPVTEMVTGIDLVEEQIRIAAGEPL-----------------------------PFTQEDIKLRGHA 334
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   455 TACRITSEDPNDGFKPSGGTLHELNFRSSSNV---WGYFSvgnNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELS 531
Cdd:COG4770  335 IECRINAEDPARGFLPSPGTITRLRPPGGPGVrvdSGVYE---GYEIPPYYDSMIAKLIVWGPDREEAIARMRRALAEFV 411
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6324343   532 IRGdFRTTVEYLIKLLETEDFEDNTITTGWLDdliTHKMTAEKPDPTLAVICGAATK 588
Cdd:COG4770  412 IEG-VKTNIPFLRALLAHPDFRAGDVDTGFIE---RELAELLAAAAPEELALAAAMK 464
PRK08591 PRK08591
acetyl-CoA carboxylase biotin carboxylase subunit; Validated
59-563 9.84e-104

acetyl-CoA carboxylase biotin carboxylase subunit; Validated


Pssm-ID: 236307 [Multi-domain]  Cd Length: 451  Bit Score: 341.01  E-value: 9.84e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDleANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:PRK08591    2 FDKILIANRGEIALRIIRACKELGIKT---------VAVHSTAD--RDALHVQLADEAVCIGPAPSKKSYLNIPAIISAA 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    139 ERADVDAVWAGWGHASENPLLPEKLSQSKrkVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGtgvdtvhvdektG 218
Cdd:PRK08591   71 EITGADAIHPGYGFLSENADFAEICEDSG--FTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSD------------G 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    219 LVsvdddiyqkgccTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIP---GSP-IFIMKLAG 294
Cdd:PRK08591  137 PV------------DDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKaafGNPgVYMEKYLE 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    295 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHdDGK 374
Cdd:PRK08591  205 NPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NGE 283
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    375 FYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnPHSASEIDFefktqdatkkqrrpipKGHC 454
Cdd:PRK08591  284 FYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPL-------------SIKQEDIVF----------------RGHA 334
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    455 TACRITSEDPNDGFKPSGGT---LHE---LNFRSSSNVW-GYFsvgnngnIHSFSDSQFGHIFAFGENRQASRKHMVVAL 527
Cdd:PRK08591  335 IECRINAEDPAKNFMPSPGKitrYHPpggPGVRVDSAVYtGYT-------IPPYYDSMIGKLIVHGETREEAIARMKRAL 407
                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 6324343    528 KELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLD 563
Cdd:PRK08591  408 SEFVIDG-IKTTIPLHLRLLNDPNFQAGDYNIHYLE 442
accC TIGR00514
acetyl-CoA carboxylase, biotin carboxylase subunit; This model represents the biotin ...
59-565 3.06e-90

acetyl-CoA carboxylase, biotin carboxylase subunit; This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 129605 [Multi-domain]  Cd Length: 449  Bit Score: 302.07  E-value: 3.06e-90
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343      59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDleANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:TIGR00514    2 LDKILIANRGEIALRILRACKELGIKT---------VAVHSTAD--RDALHVLLADEAVCIGPAPSAKSYLNIPNIISAA 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     139 ERADVDAVWAGWGHASENPLLPEKLSQSKrkVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVhvdektg 218
Cdd:TIGR00514   71 EITGADAIHPGYGFLSENANFAEQCERSG--FTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDE------- 141
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     219 lvsvdddiyqkgcctspEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIP---GSP-IFIMKLAG 294
Cdd:TIGR00514  142 -----------------EENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKaafGNDgVYIEKYIE 204
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     295 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDdGK 374
Cdd:TIGR00514  205 NPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKN-GE 283
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     375 FYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnphsaseidfefktqdaTKKQRRPIPKGHC 454
Cdd:TIGR00514  284 FYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEPL-----------------------------SLKQEDVVVRGHA 334
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     455 TACRITSEDPNDGFKPSGGTLHE------LNFRSSSNVWGYFSvgnngnIHSFSDSQFGHIFAFGENRQASRKHMVVALK 528
Cdd:TIGR00514  335 IECRINAEDPIKTFLPSPGRITRylppggPGVRWDSHVYSGYT------VPPYYDSMIGKLITYGKTREVAIARMKRALS 408
                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 6324343     529 ELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLDDL 565
Cdd:TIGR00514  409 EFIIDG-IKTTIPFHQRILEDENFQHGGTNIHYLEKK 444
CPSase_L_D2 pfam02786
Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase ...
185-412 1.16e-56

Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.


Pssm-ID: 397079 [Multi-domain]  Cd Length: 209  Bit Score: 195.99  E-value: 1.16e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     185 DKISSTIVAQSAKVPCIPWSGTGVDTVhvdektglvsvdddiyqkgcctspEDGLQKAKRIGFPVMIKASEGGGGKGIRQ 264
Cdd:pfam02786    1 DKVLFKAAMKEAGVPTVPGTAGPVETE------------------------EEALAAAKEIGYPVIIKAAFGGGGLGMGI 56
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     265 VEREEDFIALYHQAANEIPGSP----IFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAE 340
Cdd:pfam02786   57 ARNEEELAELFALALAEAPAAFgnpqVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRRTQKSIEVAPSQTLTDE 136
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6324343     341 TFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPM 412
Cdd:pfam02786  137 ERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPL 208
Biotin_carb_C smart00878
Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA ...
457-563 3.44e-30

Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.


Pssm-ID: 214878 [Multi-domain]  Cd Length: 107  Bit Score: 115.97  E-value: 3.44e-30
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343      457 CRITSEDPNDGFKPSGGTLHELNFRSSSNVwgYFSVGNNGNIH--SFSDSQFGHIFAFGENRQASRKHMVVALKELSIRG 534
Cdd:smart00878    2 CRINAEDPANGFLPSPGRITRYRFPGGPGV--RVDSGVYEGYEvpPYYDSMIAKLIVWGEDREEAIARLRRALDEFRIRG 79
                            90       100
                    ....*....|....*....|....*....
gi 6324343      535 dFRTTVEYLIKLLETEDFEDNTITTGWLD 563
Cdd:smart00878   80 -VKTNIPFLRALLRHPDFRAGDVDTGFLE 107
MmdA COG4799
Acetyl-CoA carboxylase, carboxyltransferase component [Lipid transport and metabolism];
1579-1893 1.27e-18

Acetyl-CoA carboxylase, carboxyltransferase component [Lipid transport and metabolism];


Pssm-ID: 443827 [Multi-domain]  Cd Length: 508  Bit Score: 92.01  E-value: 1.27e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343  1579 GRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMaeeivplfqvawndaanpdkgfqylyl 1658
Cdd:COG4799   81 GRPVVVVANDFTVKGGSLGPMTAKKILRAQDIALENGLPVIYLVDSGGARLQE--------------------------- 133
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343  1659 tsegmetlkkfdkensvltertvingeerfviktiigsedglGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAY 1738
Cdd:COG4799  134 ------------------------------------------GVESFAGYGRIFYRNARSSGGIPQISVIMGPCAAGGAY 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343  1739 LVRLGQRAIQVEGQPII-LTGAPAINKMLGREVytSNLQLGGTQI-MYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNM 1816
Cdd:COG4799  172 SPALSDFVIMVKGTSQMfLGGPPVVKAATGEEV--TAEELGGADVhARVSGVADYLAEDEEEALALARRLLSYLPSNNLE 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343  1817 PVPILETKDTWDRP---VDFTPTND-ETYDVRWMIEGretesgfeygLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVI 1892
Cdd:COG4799  250 DPPRAEPAPPARDPeelYGIVPEDPrKPYDMREVIAR----------LVDGGSFFEFKPLYGPNIVTGFARIDGRPVGIV 319

                 .
gi 6324343  1893 G 1893
Cdd:COG4799  320 A 320
Biotin_lipoyl pfam00364
Biotin-requiring enzyme; This family covers two Prosite entries, the conserved lysine residue ...
701-767 1.31e-17

Biotin-requiring enzyme; This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognize the Glycine cleavage system H proteins.


Pssm-ID: 395290 [Multi-domain]  Cd Length: 73  Bit Score: 79.18  E-value: 1.31e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6324343     701 TQLRTPSPGKLV-----KFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIVQLLKQP-GSTIVAGDIMAIM 767
Cdd:pfam00364    1 TEIKSPMIGESVregvvEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPeGDTVEVGDPLAKI 73
biotinyl_domain cd06850
The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all ...
702-767 1.38e-17

The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.


Pssm-ID: 133459 [Multi-domain]  Cd Length: 67  Bit Score: 78.61  E-value: 1.38e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6324343   702 QLRTPSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIV-QLLKQPGSTIVAGDIMAIM 767
Cdd:cd06850    1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVkEILVKEGDQVEAGQLLVVI 67
PRK12999 PRK12999
pyruvate carboxylase; Reviewed
698-767 4.35e-08

pyruvate carboxylase; Reviewed


Pssm-ID: 237263 [Multi-domain]  Cd Length: 1146  Bit Score: 59.00  E-value: 4.35e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6324343    698 NDPTQLRTPSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIV-QLLKQPGSTIVAGDIMAIM 767
Cdd:PRK12999 1074 GNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVkRVLVKAGDQVEAGDLLVEL 1144
PycA COG1038
Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the ...
698-767 5.41e-08

Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440660 [Multi-domain]  Cd Length: 1144  Bit Score: 58.55  E-value: 5.41e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6324343   698 NDPTQLRTPSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIV-QLLKQPGSTIVAGDIMAIM 767
Cdd:COG1038 1074 GNPGHIGAPMPGTVVKVLVKEGDEVKKGDPLLTIEAMKMETTITAPRDGTVkEVLVKEGDQVEAGDLLIEL 1144
PLN02820 PLN02820
3-methylcrotonyl-CoA carboxylase, beta chain
1722-1989 7.70e-05

3-methylcrotonyl-CoA carboxylase, beta chain


Pssm-ID: 178415 [Multi-domain]  Cd Length: 569  Bit Score: 47.88  E-value: 7.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   1722 IFTITLVTCRSVGIGAYLVRLGQRAIQVEGQ-PIILTGAPAINKMLGREVYTSNLqlGGTQIMYN-NGVSHLTAVDDLAG 1799
Cdd:PLN02820  206 IPQIALVLGSCTAGGAYVPAMADESVIVKGNgTIFLAGPPLVKAATGEEVSAEDL--GGADVHCKvSGVSDHFAQDELHA 283
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   1800 VE---KIVEWMsYVPAKRNMPVPILETKDTWDRPV-------DFTPTN-DETYDVRWMIEGretesgfeygLFDKGSFFE 1868
Cdd:PLN02820  284 LAigrNIVKNL-HLAAKQGMENTLGSKNPEYKEPLydvkelrGIVPADhKQSFDVRSVIAR----------IVDGSEFDE 352
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   1869 TLSGWAKGVVVGRARLGGIPLGVIGvetrtvenlipadpanpNSAetliqepgqVWHPNSAFKTAQAInDFNNGEQLPMM 1948
Cdd:PLN02820  353 FKKNYGTTLVTGFARIYGQPVGIIG-----------------NNG---------ILFTESALKGAHFI-ELCAQRGIPLL 405
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 6324343   1949 ILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYI 1989
Cdd:PLN02820  406 FLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITII 446
 
Name Accession Description Interval E-value
ACC_central pfam08326
Acetyl-CoA carboxylase, central region; The region featured in this family is found in various ...
768-1479 0e+00

Acetyl-CoA carboxylase, central region; The region featured in this family is found in various eukaryotic acetyl-CoA carboxylases, N-terminal to the catalytic domain (pfam01039). This enzyme (EC:6.4.1.2) is involved in the synthesis of long-chain fatty acids, as it catalyzes the rate-limiting step in this process.


Pssm-ID: 462429  Cd Length: 718  Bit Score: 1139.22  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     768 TLDDPSKVKHALPFEGMLPDFGSPVIEGTKPAYKFKSLVSTLENILKGYDNQVIMNASLQQLIEVLRNPKLPYSEWKLHI 847
Cdd:pfam08326    1 ALDDPSRVKHAQPFEGQLPELGPPTVVGNKPHQRFAALLNILENILAGYDNQVIMNETLKDLIEVLRDPELPYLEWQEQL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     848 SALHSRLPAKLDEQMEELVARSLRRGAVFPARQLSKLIDMAVKNPEYNPDK-LLGAVVEPLADIAHKYSNGLEAHEHSIF 926
Cdd:pfam08326   81 SALSGRIPAKLEASLRQLVERAHSRSAEFPAKQLRKILDKFLAELVLKADRdLFEATLAPLVDLVERYRNGLKGHEYSVF 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     927 VHFLEEYYEVEKLFNGPNVREENIILKLRDENPKDLDKVALTVLSHSKVSAKNNLILAILKHYQPLCKLSSKVSAIFSTP 1006
Cdd:pfam08326  161 ASLLEEYYDVEKLFSGGNVREEDVILKLRDENKDDLDKVVDIVLSHSRVSSKNKLILALLDHYRPNCPNVSNVAKELRPV 240
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1007 LQHIVELESKATAKVALQAREILIQGALPSVKERTEQIEHILKSSVVKVAYGSSNPKRSEPDLNILKDLIDSNYVVFDVL 1086
Cdd:pfam08326  241 LKKLAELESRETAKVALKAREVLIQCALPSLEERKNQMEHILKSSVVESGYGESGWKHREPSLEVLKELIDSKYTVFDVL 320
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1087 LQFLTHQDPVVTAAAAQVYIRRAYRAYTIGDIRVHEGVTVP-IVEWKFQLPSAAFSTF-----PTVKSKMGMNRAVSVSD 1160
Cdd:pfam08326  321 PPFFYHSDPWVSLAALEVYVRRAYRAYSLKSIQYHEGEDSPpIVSWQFQLPSSHSSEFgsplsPSSDSSPPFKRIASVSD 400
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1161 LSYVAN-SQSSPLREGILMAVDHLDDVDEILSQSLEVIPRHQSSSNgpapdRSGSSASLSNVANVCVASTEGFESEEEIL 1239
Cdd:pfam08326  401 LSYLVNkSEDEPLRTGAMVAFKSLDDLEEALPRALEEFPSEPEESG-----ESNSSDEPINVLNVAIRDAEGSDSDEELL 475
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1240 VRLREILDLNKQELINASIRRITFMFGFKDGSYPKYYTFNGP-NYNENETIRHIEPALAFQLELGRLSNFNIKPIFTDNR 1318
Cdd:pfam08326  476 ERLEEILKENKEELLAAGVRRITFIIGRKDGQYPKYFTFRGPdNYEEDPIIRHIEPALAFQLELGRLSNFDIKPVPTENR 555
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1319 NIHVYEAVSKTSPLDKRFFTRGIIRTGHIRDDISIQEYLTSEANRLMSDILDNLEV--TDTSNSDLNHIFINFIAVFDIS 1396
Cdd:pfam08326  556 QIHLYEAVGKENPTDKRFFVRAIIRPGRLRDDIPTAEYLISEAERLLNDILDALEVasIGNSNSDLNHIFLNFVPVFNVD 635
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1397 PEDVEAAFGGFLERFGKRLLRLRVSSAEIRIIIKDPQTGAPVPLRALINNVSGYVIKTEMYTEVKNAKGEWVFKSLGKPG 1476
Cdd:pfam08326  636 PEDVEEAVGGFLERFGKRLWRLRVTQAEIRIIIRDPETGPPIPLRLVITNVSGYVVKVELYREVKDDKGEWVFKSIGKPG 715

                   ...
gi 6324343    1477 SMH 1479
Cdd:pfam08326  716 PMH 718
Carboxyl_trans pfam01039
Carboxyl transferase domain; All of the members in this family are biotin dependent ...
1574-2118 0e+00

Carboxyl transferase domain; All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.


Pssm-ID: 426008 [Multi-domain]  Cd Length: 491  Bit Score: 621.97  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1574 PEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRgIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGF 1653
Cdd:pfam01039    1 PEHPRGKLTARERIDLLLDPGSFGELEDLFFHRATEFGRKR-IPRDGVVTGSGAVIGRAVEVVAQDFTVFGGSLGPAKGE 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1654 QYLYLtsegMETLKKfdkensvltertviNGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSV 1733
Cdd:pfam01039   80 KILRA----MEIAIK--------------TGLPLIGINDSGGARIQEGVENLRGSGKIFGRNSLASGVIPQISLIMGPCA 141
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1734 GIGAYLVRLGQRAIQVEG-QPIILTGAPAINKMLGrEVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPA 1812
Cdd:pfam01039  142 GGGAYLPALGDFVIMVEGtSPMFLTGPPVIKKVTG-EEVTSEELGGATQHMTISGVSHLTALDDEDALELIRKWLSYLPK 220
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1813 KRNM---PVPILETKDTWDRP---VDFTPTND-ETYDVRWMIEgretesgfeyGLFDKGSFFETLSGWAKGVVVGRARLG 1885
Cdd:pfam01039  221 PAPNnrePVPIVPTKDPPDRDaplVSIVPDDPkKPYDVREVIA----------GIVDEGEFFEIKPGYAKTVVTGFARLG 290
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1886 GIPLGVIGVETRtvenlipadpanpnsaetliQEPGqVWHPNSAFKTAQAINDFNNgEQLPMMILANWRGFSGGQRDMFN 1965
Cdd:pfam01039  291 GIPVGVVANQPR--------------------VGAG-VLFPDSADKAARFIRDCDA-FNLPLVILADVPGFLPGQRQEYG 348
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    1966 EVLKYGSFIVDALVDYKQPIIIYIPPtgELRGGSWVVVDPTINADQMeMYADVNARAGVLEPQGMVGIKFRREKLLDTMN 2045
Cdd:pfam01039  349 GILKHGAKLLYALAEATVPKITVIPR--KAYGGAYVVMDSKINGADI-NFAWPTARIAVMGPEGAVEIKFRKEKAAAEMR 425
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6324343    2046 RLDDKyrelrsqlsnkslapevhQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEA 2118
Cdd:pfam01039  426 GKDLA------------------ATRKQKIAEYEEELSPPYVAAARGFADAVIDPGRTRAKLVIALAALWTKP 480
PccA COG4770
Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism];
59-588 4.56e-127

Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid transport and metabolism];


Pssm-ID: 443802 [Multi-domain]  Cd Length: 466  Bit Score: 408.63  E-value: 4.56e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDleANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:COG4770    2 FKKVLIANRGEIAVRIIRTCRELGIRT---------VAVYSDAD--RDALHVRLADEAVCIGPAPAAESYLNIDAIIAAA 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   139 ERADVDAVWAGWGHASENPLLPEKLSqsKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSgtgvdtvhvdektg 218
Cdd:COG4770   71 KATGADAIHPGYGFLSENADFAEACE--DAGIVFIGPSPEAIRAMGDKIAAKKLMKAAGVPVVPGS-------------- 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   219 lvsvdddiyqKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE---IPGSP-IFIMKLAG 294
Cdd:COG4770  135 ----------DGPVQDAEEALAIAEEIGYPVLIKASAGGGGKGMRVVRSEEELEEAFESARREakaAFGDDrVYLEKYIE 204
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   295 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYShDDGK 374
Cdd:COG4770  205 RPRHIEVQVLADKHGNVVHLGERDCSIQRRHQKVIEEAPSPALTEELRERMGEAAVRAAKAVGYVGAGTVEFLVD-ADGN 283
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   375 FYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnphsaseidfefktqdaTKKQRRPIPKGHC 454
Cdd:COG4770  284 FYFLEMNTRLQVEHPVTEMVTGIDLVEEQIRIAAGEPL-----------------------------PFTQEDIKLRGHA 334
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   455 TACRITSEDPNDGFKPSGGTLHELNFRSSSNV---WGYFSvgnNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELS 531
Cdd:COG4770  335 IECRINAEDPARGFLPSPGTITRLRPPGGPGVrvdSGVYE---GYEIPPYYDSMIAKLIVWGPDREEAIARMRRALAEFV 411
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6324343   532 IRGdFRTTVEYLIKLLETEDFEDNTITTGWLDdliTHKMTAEKPDPTLAVICGAATK 588
Cdd:COG4770  412 IEG-VKTNIPFLRALLAHPDFRAGDVDTGFIE---RELAELLAAAAPEELALAAAMK 464
PRK08591 PRK08591
acetyl-CoA carboxylase biotin carboxylase subunit; Validated
59-563 9.84e-104

acetyl-CoA carboxylase biotin carboxylase subunit; Validated


Pssm-ID: 236307 [Multi-domain]  Cd Length: 451  Bit Score: 341.01  E-value: 9.84e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDleANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:PRK08591    2 FDKILIANRGEIALRIIRACKELGIKT---------VAVHSTAD--RDALHVQLADEAVCIGPAPSKKSYLNIPAIISAA 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    139 ERADVDAVWAGWGHASENPLLPEKLSQSKrkVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGtgvdtvhvdektG 218
Cdd:PRK08591   71 EITGADAIHPGYGFLSENADFAEICEDSG--FTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSD------------G 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    219 LVsvdddiyqkgccTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIP---GSP-IFIMKLAG 294
Cdd:PRK08591  137 PV------------DDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKaafGNPgVYMEKYLE 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    295 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHdDGK 374
Cdd:PRK08591  205 NPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NGE 283
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    375 FYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnPHSASEIDFefktqdatkkqrrpipKGHC 454
Cdd:PRK08591  284 FYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPL-------------SIKQEDIVF----------------RGHA 334
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    455 TACRITSEDPNDGFKPSGGT---LHE---LNFRSSSNVW-GYFsvgnngnIHSFSDSQFGHIFAFGENRQASRKHMVVAL 527
Cdd:PRK08591  335 IECRINAEDPAKNFMPSPGKitrYHPpggPGVRVDSAVYtGYT-------IPPYYDSMIGKLIVHGETREEAIARMKRAL 407
                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 6324343    528 KELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLD 563
Cdd:PRK08591  408 SEFVIDG-IKTTIPLHLRLLNDPNFQAGDYNIHYLE 442
PRK12999 PRK12999
pyruvate carboxylase; Reviewed
59-564 2.43e-99

pyruvate carboxylase; Reviewed


Pssm-ID: 237263 [Multi-domain]  Cd Length: 1146  Bit Score: 349.05  E-value: 2.43e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     59 ISKILIANNGIAAVKEIRSvrkwAYETfgDDRTVqfvAMATPEDleANAEYIRMADQYIEVpgGTNNNN---YANVDLIV 135
Cdd:PRK12999    5 IKKVLVANRGEIAIRIFRA----ATEL--GIRTV---AIYSEED--KLSLHRFKADEAYLI--GEGKHPvraYLDIDEII 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    136 DIAERADVDAVWAGWGHASENPLLPEKLSQSKrkVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDtvhvde 215
Cdd:PRK12999   72 RVAKQAGVDAIHPGYGFLSENPEFARACAEAG--ITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPID------ 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    216 ktglvsvdddiyqkgcctSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIP---GSP-IFIMK 291
Cdd:PRK12999  144 ------------------DIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKaafGNDeVYLEK 205
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    292 LAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYShD 371
Cdd:PRK12999  206 YVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVD-A 284
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    372 DGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGipmhrisdirtlygmnpHSASEIDFEFKTQDATKkqrrpiPK 451
Cdd:PRK12999  285 DGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEG-----------------ATLHDLEIGIPSQEDIR------LR 341
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    452 GHCTACRITSEDPNDGFKPSGGTLHElnFRSSsnvwGYFSV---GNNGN----IHSFSDSQFGHIFAFGEN-RQASRKhM 523
Cdd:PRK12999  342 GYAIQCRITTEDPANNFMPDTGRITA--YRSP----GGFGVrldGGNAFagaeITPYYDSLLVKLTAWGRTfEQAVAR-M 414
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|.
gi 6324343    524 VVALKELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLDD 564
Cdd:PRK12999  415 RRALREFRIRG-VKTNIPFLENVLKHPDFRAGDYTTSFIDE 454
PRK06111 PRK06111
acetyl-CoA carboxylase biotin carboxylase subunit; Validated
59-564 2.26e-98

acetyl-CoA carboxylase biotin carboxylase subunit; Validated


Pssm-ID: 180406 [Multi-domain]  Cd Length: 450  Bit Score: 325.44  E-value: 2.26e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDleANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:PRK06111    2 FQKVLIANRGEIAVRIIRTCQKLGIRT---------VAIYSEAD--RDALHVKMADEAYLIGGPRVQESYLNLEKIIEIA 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    139 ERADVDAVWAGWGHASENPLLPEKLSQSKrkVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPwsgtGVDTvhvdektg 218
Cdd:PRK06111   71 KKTGAEAIHPGYGLLSENASFAERCKEEG--IVFIGPSADIIAKMGSKIEARRAMQAAGVPVVP----GITT-------- 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    219 lvSVDDdiyqkgcctsPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALY----HQAANEIPGSPIFIMKLAG 294
Cdd:PRK06111  137 --NLED----------AEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFesnkKRAANFFGNGEMYIEKYIE 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    295 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYshDDGK 374
Cdd:PRK06111  205 DPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLV--DEQK 282
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    375 -FYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnPHSASEIdfefktqdatkkqRRpipKGH 453
Cdd:PRK06111  283 nFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKL-------------SFTQDDI-------------KR---SGH 333
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    454 CTACRITSEDPNDgFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIR 533
Cdd:PRK06111  334 AIEVRIYAEDPKT-FFPSPGKITDLTLPGGEGVRHDHAVENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVE 412
                         490       500       510
                  ....*....|....*....|....*....|.
gi 6324343    534 GdFRTTVEYLIKLLETEDFEDNTITTGWLDD 564
Cdd:PRK06111  413 G-IKTNIPLLLQVLEDPVFKAGGYTTGFLTK 442
PycA COG1038
Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the ...
59-564 2.79e-96

Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440660 [Multi-domain]  Cd Length: 1144  Bit Score: 339.75  E-value: 2.79e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    59 ISKILIANNG-IAavkeIRSVRKwAYETfgDDRTVqfvAMATPEDleANAEYiRM-ADQYIEVpgGTNNN---NYANVDL 133
Cdd:COG1038    4 IKKVLVANRGeIA----IRVFRA-ATEL--GIRTV---AIYSEED--RYSLH-RFkADEAYLI--GEGKGpvdAYLDIEE 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   134 IVDIAERADVDAVWAGWGHASENPLLPEKLSqsKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPwsgtgvdtvhv 213
Cdd:COG1038   69 IIRVAKEKGVDAIHPGYGFLSENPEFARACE--EAGITFIGPSPEVLEMLGDKVAARAAAIEAGVPVIP----------- 135
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   214 dektglvSVDDDIyqkgccTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIP---GSP-IFI 289
Cdd:COG1038  136 -------GTEGPV------DDLEEALAFAEEIGYPVMLKAAAGGGGRGMRVVRSEEELEEAFESARREAKaafGDDeVFL 202
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   290 MKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAP-VTIAKaETFHEMEKAAVRLGKLVGYVSAGTVEYLY 368
Cdd:COG1038  203 EKYIERPKHIEVQILGDKHGNIVHLFERDCSVQRRHQKVVEIAPaPNLDE-ELREAICEAAVKLAKAVGYVNAGTVEFLV 281
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   369 ShDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGipmHRISDirtlygmnphsaSEIDfeFKTQDATKKqrrp 448
Cdd:COG1038  282 D-DDGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEG---YSLDD------------PEIG--IPSQEDIRL---- 339
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   449 ipKGHCTACRITSEDPNDGFKPSGGTLheLNFRSSSnvwGyFSV---GNNG----NIHSFSDS------QFGHIFAfgen 515
Cdd:COG1038  340 --NGYAIQCRITTEDPANNFMPDTGRI--TAYRSAG---G-FGIrldGGNAytgaVITPYYDSllvkvtAWGRTFE---- 407
                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*....
gi 6324343   516 rQASRKhMVVALKELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLDD 564
Cdd:COG1038  408 -EAIRK-MRRALREFRIRG-VKTNIPFLENVLNHPDFLAGECTTSFIDE 453
PRK08654 PRK08654
acetyl-CoA carboxylase biotin carboxylase subunit;
60-608 9.27e-94

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 236325 [Multi-domain]  Cd Length: 499  Bit Score: 313.84  E-value: 9.27e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     60 SKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDleANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAE 139
Cdd:PRK08654    3 KKILIANRGEIAIRVMRACRELGIKT---------VAVYSEAD--KNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAK 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    140 RADVDAVWAGWGHASENPLLPEKLSqsKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDtvhvdektgl 219
Cdd:PRK08654   72 KAGADAIHPGYGFLAENPEFAKACE--KAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIE---------- 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    220 vsvdddiyqkgcctSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFI-ALYHQ---AANEIPGSPIFIMKLAGR 295
Cdd:PRK08654  140 --------------DIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEdAIESTqsiAQSAFGDSTVFIEKYLEK 205
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    296 ARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYShdDGKF 375
Cdd:PRK08654  206 PRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYS--NGNF 283
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    376 YFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnPHSASEIDFefktqdatkkqrrpipKGHCT 455
Cdd:PRK08654  284 YFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEEL-------------SFKQEDITI----------------RGHAI 334
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    456 ACRITSEDPNDGFKPSGGTLheLNFRS--------SSNVW-GYfsvgnngNIHSFSDSQFGHIFAFGENRQASRKHMVVA 526
Cdd:PRK08654  335 ECRINAEDPLNDFAPSPGKI--KRYRSpggpgvrvDSGVHmGY-------EIPPYYDSMISKLIVWGRTREEAIARMRRA 405
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    527 LKELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLDD------LITHKMTAEKPD-PTLAVICGAATKAFLASEEARHK 599
Cdd:PRK08654  406 LYEYVIVG-VKTNIPFHKAVMENENFVRGNLHTHFIEEettileEMKRYALEEEEReKTLSEKFFPGNKKVAAIAAAVNA 484

                  ....*....
gi 6324343    600 YIESLQKGQ 608
Cdd:PRK08654  485 YISSAKKDN 493
PRK05586 PRK05586
acetyl-CoA carboxylase biotin carboxylase subunit;
59-568 2.50e-93

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 180150 [Multi-domain]  Cd Length: 447  Bit Score: 310.88  E-value: 2.50e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDLEAnaEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:PRK05586    2 FKKILIANRGEIAVRIIRACREMGIET---------VAVYSEADKDA--LHVQLADEAVCIGPASSKDSYLNIQNIISAT 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    139 ERADVDAVWAGWGHASENPllpeKLSQSKRK--VIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSgtgvdtvhvdek 216
Cdd:PRK05586   71 VLTGAQAIHPGFGFLSENS----KFAKMCKEcnIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGS------------ 134
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    217 tglvsvdddiyqKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKL 292
Cdd:PRK05586  135 ------------EGEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAfgddSMYIEKF 202
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    293 AGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYShDD 372
Cdd:PRK05586  203 IENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLD-KD 281
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    373 GKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGipmhrisdirtlygmnphsaSEIDFefkTQDATKKqrrpipKG 452
Cdd:PRK05586  282 GNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYG--------------------EKLSI---KQEDIKI------NG 332
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    453 HCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSI 532
Cdd:PRK05586  333 HSIECRINAEDPKNGFMPCPGKIEELYIPGGLGVRVDSAVYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFII 412
                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 6324343    533 RGdFRTTVEYLIKLLETEDFEDNTITTGWLDDLITH 568
Cdd:PRK05586  413 EG-VNTNIDFQFIILEDEEFIKGTYDTSFIEKKLVD 447
accC TIGR00514
acetyl-CoA carboxylase, biotin carboxylase subunit; This model represents the biotin ...
59-565 3.06e-90

acetyl-CoA carboxylase, biotin carboxylase subunit; This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 129605 [Multi-domain]  Cd Length: 449  Bit Score: 302.07  E-value: 3.06e-90
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343      59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDleANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:TIGR00514    2 LDKILIANRGEIALRILRACKELGIKT---------VAVHSTAD--RDALHVLLADEAVCIGPAPSAKSYLNIPNIISAA 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     139 ERADVDAVWAGWGHASENPLLPEKLSQSKrkVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVhvdektg 218
Cdd:TIGR00514   71 EITGADAIHPGYGFLSENANFAEQCERSG--FTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDE------- 141
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     219 lvsvdddiyqkgcctspEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIP---GSP-IFIMKLAG 294
Cdd:TIGR00514  142 -----------------EENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKaafGNDgVYIEKYIE 204
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     295 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDdGK 374
Cdd:TIGR00514  205 NPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKN-GE 283
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     375 FYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnphsaseidfefktqdaTKKQRRPIPKGHC 454
Cdd:TIGR00514  284 FYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEPL-----------------------------SLKQEDVVVRGHA 334
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     455 TACRITSEDPNDGFKPSGGTLHE------LNFRSSSNVWGYFSvgnngnIHSFSDSQFGHIFAFGENRQASRKHMVVALK 528
Cdd:TIGR00514  335 IECRINAEDPIKTFLPSPGRITRylppggPGVRWDSHVYSGYT------VPPYYDSMIGKLITYGKTREVAIARMKRALS 408
                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 6324343     529 ELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLDDL 565
Cdd:TIGR00514  409 EFIIDG-IKTTIPFHQRILEDENFQHGGTNIHYLEKK 444
PRK08462 PRK08462
acetyl-CoA carboxylase biotin carboxylase subunit;
59-563 9.74e-87

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 236269 [Multi-domain]  Cd Length: 445  Bit Score: 291.65  E-value: 9.74e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDLEANaeYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:PRK08462    4 IKRILIANRGEIALRAIRTIQEMGKEA---------IAIYSTADKDAL--YLKYADAKICIGGAKSSESYLNIPAIISAA 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    139 ERADVDAVWAGWGHASENPLLPEKLSqsKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSgtgvdtvhvdektg 218
Cdd:PRK08462   73 EIFEADAIFPGYGFLSENQNFVEICS--HHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGS-------------- 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    219 lvsvdddiyqKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKLAG 294
Cdd:PRK08462  137 ----------DGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAfgdgTMYMEKFIN 206
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    295 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDgK 374
Cdd:PRK08462  207 NPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNL-D 285
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    375 FYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnpHSASEIDFefktqdatkkqrrpipKGHC 454
Cdd:PRK08462  286 FYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEEL--------------PSQESIKL----------------KGHA 335
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    455 TACRITSEDPNDgFKPSGGTLHEL------NFRSSSNVWGYFSVGnngnihSFSDSQFGHIFAFGENRQASRKHMVVALK 528
Cdd:PRK08462  336 IECRITAEDPKK-FYPSPGKITKWiapggrNVRMDSHAYAGYVVP------PYYDSMIGKLIVWGEDRNRAIAKMKRALK 408
                         490       500       510
                  ....*....|....*....|....*....|....*
gi 6324343    529 ELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLD 563
Cdd:PRK08462  409 EFKVEG-IKTTIPFHLEMMENADFINNKYDTKYLE 442
urea_carbox TIGR02712
urea carboxylase; Members of this family are ATP-dependent urea carboxylase, including ...
61-565 8.15e-85

urea carboxylase; Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism]


Pssm-ID: 274264 [Multi-domain]  Cd Length: 1201  Bit Score: 305.80  E-value: 8.15e-85
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343      61 KILIANNGIAAVKEIRSVRKwayetfgddrtVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIAER 140
Cdd:TIGR02712    3 TVLIANRGEIAVRIIRTLRR-----------MGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKK 71
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     141 ADVDAVWAGWGHASENPLLPEKLSQSKrkVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPwsgtgvdtvhvdeKTGLV 220
Cdd:TIGR02712   72 TGAQAIHPGYGFLSENAAFAEACEAAG--IVFVGPTPEQIRKFGLKHTARELAEAAGVPLLP-------------GTGLL 136
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     221 SvdddiyqkgcctSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALY----HQAANEIPGSPIFIMKLAGRA 296
Cdd:TIGR02712  137 S------------SLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFetvkRLGESFFGDAGVFLERFVENA 204
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     297 RHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFY 376
Cdd:TIGR02712  205 RHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFY 284
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     377 FLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMhrisdirtlygmnphsaseiDFEFKTQDATkkqrrpiPKGHCTA 456
Cdd:TIGR02712  285 FLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGELP--------------------DFASLNISLT-------PRGAAIE 337
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     457 CRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNngNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGdF 536
Cdd:TIGR02712  338 ARVYAENPAKNFQPSPGLLTDVQFPDDVRVDTWVETGT--EVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYG-I 414
                          490       500
                   ....*....|....*....|....*....
gi 6324343     537 RTTVEYLIKLLETEDFEDNTITTGWLDDL 565
Cdd:TIGR02712  415 ETNLDYLRSILSSETFRSAQVSTRTLNSF 443
PRK12833 PRK12833
acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
56-563 3.59e-84

acetyl-CoA carboxylase biotin carboxylase subunit; Provisional


Pssm-ID: 183781 [Multi-domain]  Cd Length: 467  Bit Score: 285.11  E-value: 3.59e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     56 HTVISKILIANNGIAAVKEIRSVRKWAYetfgddRTVQFVAMATPEDLEAnaeyiRMADQYIEVPGGTNNNNYANVDLIV 135
Cdd:PRK12833    2 PSRIRKVLVANRGEIAVRIIRAARELGM------RTVAACSDADRDSLAA-----RMADEAVHIGPSHAAKSYLNPAAIL 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    136 DIAERADVDAVWAGWGHASENPLLPEKLSQSKrkVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSgtgvdtvhvde 215
Cdd:PRK12833   71 AAARQCGADAIHPGYGFLSENAAFAEAVEAAG--LIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGS----------- 137
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    216 ktglvsvdddiyqKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIP---GSP-IFIMK 291
Cdd:PRK12833  138 -------------DGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQaafGDGgVYLER 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    292 LAGRARHLEVQLLADqyGTN-ISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSH 370
Cdd:PRK12833  205 FIARARHIEVQILGD--GERvVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDD 282
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    371 DDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMH-RISDIRtlygMNphsaseidfefktqdatkkqrrpi 449
Cdd:PRK12833  283 ARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIADGEPLRfAQGDIA----LR------------------------ 334
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    450 pkGHCTACRITSEDPNDGFKPSGGTLHELNF------RSSSNVW-GYfsvgnngNIHSFSDSQFGHIFAFGENRQASRKH 522
Cdd:PRK12833  335 --GAALECRINAEDPLRDFFPNPGRIDALVWpqgpgvRVDSLLYpGY-------RVPPFYDSLLAKLIVHGEDRAAALAR 405
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|.
gi 6324343    523 MVVALKELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLD 563
Cdd:PRK12833  406 AARALRELRIDG-MKTTAPLHRALLADADVRAGRFHTNFLE 445
pyruv_carbox TIGR01235
pyruvate carboxylase; This enzyme plays a role in gluconeogensis but not glycolysis. [Energy ...
61-564 7.49e-82

pyruvate carboxylase; This enzyme plays a role in gluconeogensis but not glycolysis. [Energy metabolism, Glycolysis/gluconeogenesis]


Pssm-ID: 130302 [Multi-domain]  Cd Length: 1143  Bit Score: 295.58  E-value: 7.49e-82
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343      61 KILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDLEANAEYirMADQ-YI--EVPGGTNNNNYANVDLIVDI 137
Cdd:TIGR01235    1 KILVANRGEIAIRVFRAANELGIRT---------VAIYSEEDKLSLHRQ--KADEsYQvgEGPDLGPIEAYLSIDEIIRV 69
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     138 AERADVDAVWAGWGHASENPLLPEKLSqsKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVhvdekt 217
Cdd:TIGR01235   70 AKLNGVDAIHPGYGFLSENSEFADACN--KAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETM------ 141
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     218 glvsvdddiyqkgcctspEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKLA 293
Cdd:TIGR01235  142 ------------------EEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAfgndEVYVEKLI 203
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     294 GRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYShDDG 373
Cdd:TIGR01235  204 ERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVD-NDG 282
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     374 KFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHrisdirtlygmnphsaseidfefKTQDATKKQRRPIPKGH 453
Cdd:TIGR01235  283 KFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGASLP-----------------------TPQLGVPNQEDIRTNGY 339
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     454 CTACRITSEDPNDGFKPSGGTLHElnFRSSSNVWGYFSVGNN--GNIHS-FSDSQFGHIFAFGENRQASRKHMVVALKEL 530
Cdd:TIGR01235  340 AIQCRVTTEDPANNFQPDTGRIEA--YRSAGGFGIRLDGGNSyaGAIITpYYDSLLVKVSAWASTPEEAAAKMDRALREF 417
                          490       500       510
                   ....*....|....*....|....*....|....
gi 6324343     531 SIRGdFRTTVEYLIKLLETEDFEDNTITTGWLDD 564
Cdd:TIGR01235  418 RIRG-VKTNIPFLENVLGHPKFLDGSYDTRFIDT 450
PRK07178 PRK07178
acetyl-CoA carboxylase biotin carboxylase subunit;
58-589 8.24e-76

acetyl-CoA carboxylase biotin carboxylase subunit;


Pssm-ID: 180865 [Multi-domain]  Cd Length: 472  Bit Score: 261.19  E-value: 8.24e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     58 VISKILIANNGIAAVKEIRSVRKWAyetfgddrtVQFVAMATpeDLEANAEYIRMADQYIEVpGGTNNNNYANVDLIVDI 137
Cdd:PRK07178    1 MIKKILIANRGEIAVRIVRACAEMG---------IRSVAIYS--EADRHALHVKRADEAYSI-GADPLAGYLNPRRLVNL 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    138 AERADVDAVWAGWGHASENPLLPEKLSQskRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVhvdekt 217
Cdd:PRK07178   69 AVETGCDALHPGYGFLSENAELAEICAE--RGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADL------ 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    218 glvsvdddiyqkgcctspEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIP---GSP-IFIMKLA 293
Cdd:PRK07178  141 ------------------DEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATkafGSAeVFLEKCI 202
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    294 GRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHdDG 373
Cdd:PRK07178  203 VNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDA-DG 281
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    374 KFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPM-HRISDIRtlygmnpHSASEIDFefktqdatkkqrrpipkg 452
Cdd:PRK07178  282 EVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLPLsYKQEDIQ-------HRGFALQF------------------ 336
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    453 hctacRITSEDPNDGFKPSGGTLHElnfrsssnvwgYFSVGNNG-----------NIHSFSDSQFGHIFAFGENRQASRK 521
Cdd:PRK07178  337 -----RINAEDPKNDFLPSFGKITR-----------YYAPGGPGvrtdtaiytgyTIPPYYDSMCAKLIVWALTWEEALD 400
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6324343    522 HMVVALKELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLDdliTH----KMTAEKPDPTLAVICGAATKA 589
Cdd:PRK07178  401 RGRRALDDMRVQG-VKTTIPYYQEILRNPEFRSGQFNTSFVE---SHpeltNYSIKRKPEELAAAIAAAIAA 468
PRK08463 PRK08463
acetyl-CoA carboxylase subunit A; Validated
59-588 3.49e-69

acetyl-CoA carboxylase subunit A; Validated


Pssm-ID: 169452 [Multi-domain]  Cd Length: 478  Bit Score: 242.03  E-value: 3.49e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     59 ISKILIANNGIAAVKEIRSVRkwayetfgdDRTVQFVAMATPEDLEAnaEYIRMADQYIEVpGGTNNNNYANVDLIVDIA 138
Cdd:PRK08463    2 IHKILIANRGEIAVRVIRACR---------DLHIKSVAIYTEPDREC--LHVKIADEAYRI-GTDPIKGYLDVKRIVEIA 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    139 ERADVDAVWAGWGHASENPLLPEKLSQSKrkVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPwsGTgvdtvhvdEKTG 218
Cdd:PRK08463   70 KACGADAIHPGYGFLSENYEFAKAVEDAG--IIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVP--GT--------EKLN 137
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    219 LVSVDDDIYQkgcctspedglqkAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE----IPGSPIFIMKLAG 294
Cdd:PRK08463  138 SESMEEIKIF-------------ARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREalayFNNDEVFMEKYVV 204
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    295 RARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYShDDGK 374
Cdd:PRK08463  205 NPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLD-DYNR 283
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    375 FYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGipmhRISDIrtlygmnphsaseidfefkTQDATKkqrrpiPKGHC 454
Cdd:PRK08463  284 FYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAG----EILDL-------------------EQSDIK------PRGFA 334
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    455 TACRITSEDPNDGFKPSGGTLHEL------NFRSSSNVWGYFSvgnngnIHSFSDSQFGHIFAFGENRQASRKHMVVALK 528
Cdd:PRK08463  335 IEARITAENVWKNFIPSPGKITEYypalgpSVRVDSHIYKDYT------IPPYYDSMLAKLIVKATSYDLAVNKLERALK 408
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6324343    529 ELSIRGdFRTTVEYLIKLLETEDFEDNTITTGWLDDLI------THKMTAEKPDPTLAVICGAATK 588
Cdd:PRK08463  409 EFVIDG-IRTTIPFLIAITKTREFRRGYFDTSYIETHMqellekTEDRHQENKEEVIAAIAAALKK 473
CPSase_L_D2 pfam02786
Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase ...
185-412 1.16e-56

Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.


Pssm-ID: 397079 [Multi-domain]  Cd Length: 209  Bit Score: 195.99  E-value: 1.16e-56
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     185 DKISSTIVAQSAKVPCIPWSGTGVDTVhvdektglvsvdddiyqkgcctspEDGLQKAKRIGFPVMIKASEGGGGKGIRQ 264
Cdd:pfam02786    1 DKVLFKAAMKEAGVPTVPGTAGPVETE------------------------EEALAAAKEIGYPVIIKAAFGGGGLGMGI 56
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     265 VEREEDFIALYHQAANEIPGSP----IFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAE 340
Cdd:pfam02786   57 ARNEEELAELFALALAEAPAAFgnpqVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQRRTQKSIEVAPSQTLTDE 136
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6324343     341 TFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPM 412
Cdd:pfam02786  137 ERQMLREAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRLQVEHALAEKATGYDLAKEAAKIALGYPL 208
Biotin_carb_N pfam00289
Biotin carboxylase, N-terminal domain; This domain is structurally related to the PreATP-grasp ...
59-179 1.08e-40

Biotin carboxylase, N-terminal domain; This domain is structurally related to the PreATP-grasp domain. The family contains the N-terminus of biotin carboxylase enzymes, and propionyl-CoA carboxylase A chain.


Pssm-ID: 425585 [Multi-domain]  Cd Length: 108  Bit Score: 146.09  E-value: 1.08e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343      59 ISKILIANNGIAAVKEIRSVRKWAYETfgddrtvqfVAMATPEDleANAEYIRMADQYIEVPGGTNNNNYANVDLIVDIA 138
Cdd:pfam00289    1 IKKVLIANRGEIAVRIIRACRELGIRT---------VAVYSEAD--ANSLHVRLADEAVCLGPGPASESYLNIDAIIDAA 69
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 6324343     139 ERADVDAVWAGWGHASENPLLPEKLsqSKRKVIFIGPPGNA 179
Cdd:pfam00289   70 KETGADAIHPGYGFLSENAEFARAC--EEAGIIFIGPSPEA 108
AccC COG0439
Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway ...
131-411 7.72e-40

Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440208 [Multi-domain]  Cd Length: 263  Bit Score: 149.64  E-value: 7.72e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   131 VDLIVDIAERADVDAVWAGWGHASEN-PLLPEKLsqskrkvifiGPPGN---AMRSLGDKISSTIVAQSAKVPCIPWSgt 206
Cdd:COG0439    6 IAAAAELARETGIDAVLSESEFAVETaAELAEEL----------GLPGPspeAIRAMRDKVLMREALAAAGVPVPGFA-- 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   207 gvdtvhvdektglvsvdddiyqkgCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEI---- 282
Cdd:COG0439   74 ------------------------LVDSPEEALAFAEEIGYPVVVKPADGAGSRGVRVVRDEEELEAALAEARAEAkags 129
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   283 PGSPIFIMK-LAGraRHLEVQLLADQYGTNIslfgrdCSVQRRHQK---IIE---EAPVTIaKAETFHEMEKAAVRLGKL 355
Cdd:COG0439  130 PNGEVLVEEfLEG--REYSVEGLVRDGEVVV------CSITRKHQKppyFVElghEAPSPL-PEELRAEIGELVARALRA 200
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 6324343   356 VGYV-SAGTVEYLYsHDDGKFYFLELNPRLQVEH--PTTEMVSGVNLPAAQLQIAMGIP 411
Cdd:COG0439  201 LGYRrGAFHTEFLL-TPDGEPYLIEINARLGGEHipPLTELATGVDLVREQIRLALGEP 258
Biotin_carb_C smart00878
Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA ...
457-563 3.44e-30

Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.


Pssm-ID: 214878 [Multi-domain]  Cd Length: 107  Bit Score: 115.97  E-value: 3.44e-30
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343      457 CRITSEDPNDGFKPSGGTLHELNFRSSSNVwgYFSVGNNGNIH--SFSDSQFGHIFAFGENRQASRKHMVVALKELSIRG 534
Cdd:smart00878    2 CRINAEDPANGFLPSPGRITRYRFPGGPGV--RVDSGVYEGYEvpPYYDSMIAKLIVWGEDREEAIARLRRALDEFRIRG 79
                            90       100
                    ....*....|....*....|....*....
gi 6324343      535 dFRTTVEYLIKLLETEDFEDNTITTGWLD 563
Cdd:smart00878   80 -VKTNIPFLRALLRHPDFRAGDVDTGFLE 107
Biotin_carb_C pfam02785
Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA ...
457-564 5.54e-28

Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyzes the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.


Pssm-ID: 426981 [Multi-domain]  Cd Length: 108  Bit Score: 109.89  E-value: 5.54e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     457 CRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFSVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGdF 536
Cdd:pfam02785    2 ARIYAEDPDNNFLPSPGKVTRYRFPGGPGVRVDSGVYAGYTVSPYYDSMIAKLIVHGPTREEAIARLRRALAEFRIEG-V 80
                           90       100
                   ....*....|....*....|....*...
gi 6324343     537 RTTVEYLIKLLETEDFEDNTITTGWLDD 564
Cdd:pfam02785   81 KTNIPFLRAILEHPDFRAGEVDTGFLEE 108
MmdA COG4799
Acetyl-CoA carboxylase, carboxyltransferase component [Lipid transport and metabolism];
1579-1893 1.27e-18

Acetyl-CoA carboxylase, carboxyltransferase component [Lipid transport and metabolism];


Pssm-ID: 443827 [Multi-domain]  Cd Length: 508  Bit Score: 92.01  E-value: 1.27e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343  1579 GRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMaeeivplfqvawndaanpdkgfqylyl 1658
Cdd:COG4799   81 GRPVVVVANDFTVKGGSLGPMTAKKILRAQDIALENGLPVIYLVDSGGARLQE--------------------------- 133
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343  1659 tsegmetlkkfdkensvltertvingeerfviktiigsedglGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAY 1738
Cdd:COG4799  134 ------------------------------------------GVESFAGYGRIFYRNARSSGGIPQISVIMGPCAAGGAY 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343  1739 LVRLGQRAIQVEGQPII-LTGAPAINKMLGREVytSNLQLGGTQI-MYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNM 1816
Cdd:COG4799  172 SPALSDFVIMVKGTSQMfLGGPPVVKAATGEEV--TAEELGGADVhARVSGVADYLAEDEEEALALARRLLSYLPSNNLE 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343  1817 PVPILETKDTWDRP---VDFTPTND-ETYDVRWMIEGretesgfeygLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVI 1892
Cdd:COG4799  250 DPPRAEPAPPARDPeelYGIVPEDPrKPYDMREVIAR----------LVDGGSFFEFKPLYGPNIVTGFARIDGRPVGIV 319

                 .
gi 6324343  1893 G 1893
Cdd:COG4799  320 A 320
Biotin_lipoyl pfam00364
Biotin-requiring enzyme; This family covers two Prosite entries, the conserved lysine residue ...
701-767 1.31e-17

Biotin-requiring enzyme; This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognize the Glycine cleavage system H proteins.


Pssm-ID: 395290 [Multi-domain]  Cd Length: 73  Bit Score: 79.18  E-value: 1.31e-17
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6324343     701 TQLRTPSPGKLV-----KFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIVQLLKQP-GSTIVAGDIMAIM 767
Cdd:pfam00364    1 TEIKSPMIGESVregvvEWLVKVGDKVKAGQPLAEVEAMKMEMEIPAPVAGVVKEILVPeGDTVEVGDPLAKI 73
biotinyl_domain cd06850
The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all ...
702-767 1.38e-17

The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.


Pssm-ID: 133459 [Multi-domain]  Cd Length: 67  Bit Score: 78.61  E-value: 1.38e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6324343   702 QLRTPSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIV-QLLKQPGSTIVAGDIMAIM 767
Cdd:cd06850    1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVkEILVKEGDQVEAGQLLVVI 67
COG3919 COG3919
Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];
111-411 1.09e-15

Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];


Pssm-ID: 443124 [Multi-domain]  Cd Length: 382  Bit Score: 81.51  E-value: 1.09e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   111 RMADQYIEVPGGTNNNNyANVDLIVDIAERADVDAVWA---GWGHA-SEN-PLLPEKlsqskrkVIFIGPPGNAMRSLGD 185
Cdd:COG3919   46 RYVDEVVVVPDPGDDPE-AFVDALLELAERHGPDVLIPtgdEYVELlSRHrDELEEH-------YRLPYPDADLLDRLLD 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   186 KISSTIVAQSAKVPcIPwsgtgvDTVHVDEKTGLVSVDDDIyqkgcctspedglqkakriGFPVMIKASEG--------G 257
Cdd:COG3919  118 KERFYELAEELGVP-VP------KTVVLDSADDLDALAEDL-------------------GFPVVVKPADSvgydelsfP 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   258 GGKGIRQVEREEDFIALYHQAANE---------IPGspifimklaGRARHLEVQLLADQYGTnISLFgrdCSVQRRHQKI 328
Cdd:COG3919  172 GKKKVFYVDDREELLALLRRIAAAgyelivqeyIPG---------DDGEMRGLTAYVDRDGE-VVAT---FTGRKLRHYP 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   329 IEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRL--QVEHPTtemVSGVNLPAAQLQI 406
Cdd:COG3919  239 PAGGNSAARESVDDPELEEAARRLLEALGYHGFANVEFKRDPRDGEYKLIEINPRFwrSLYLAT---AAGVNFPYLLYDD 315

                 ....*
gi 6324343   407 AMGIP 411
Cdd:COG3919  316 AVGRP 320
CPSaseII_lrg TIGR01369
carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes ...
233-409 4.73e-10

carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]


Pssm-ID: 273581 [Multi-domain]  Cd Length: 1050  Bit Score: 65.41  E-value: 4.73e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     233 TSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADqyGTNI 312
Cdd:TIGR01369  691 TSVEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVAVSPEHPVLIDKYLEDAVEVDVDAVSD--GEEV 768
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     313 SLFGrdcsvQRRHqkiIEEA------------PVTIAkAETFHEMEKAAVRLGKLVGYVSAGTVEYLYshDDGKFYFLEL 380
Cdd:TIGR01369  769 LIPG-----IMEH---IEEAgvhsgdstcvlpPQTLS-AEIVDRIKDIVRKIAKELNVKGLMNIQFAV--KDGEVYVIEV 837
                          170       180
                   ....*....|....*....|....*....
gi 6324343     381 NPRLQVEHPTTEMVSGVNLPAAQLQIAMG 409
Cdd:TIGR01369  838 NPRASRTVPFVSKATGVPLAKLAVRVMLG 866
CarB COG0458
Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide ...
232-383 2.39e-08

Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Carbamoylphosphate synthase large subunit is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 440226 [Multi-domain]  Cd Length: 536  Bit Score: 59.12  E-value: 2.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   232 CTSPEDGLQKAKRIGFPVMIKASE--GGGGKGIrqVEREEDFIALYHQAANEIPGSPIFIMK-LAGrARHLEVQLLADQY 308
Cdd:COG0458  135 ATSVEEALAIAEEIGYPVIVRPSYvlGGRGMGI--VYNEEELEEYLERALKVSPDHPVLIDEsLLG-AKEIEVDVVRDGE 211
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   309 GTNISLfgrdCSVQrrHqkiIEEA------------PVTIAKAEtFHEMEKAAVRLGKLVGYVsaGTVEYLYSHDDGKFY 376
Cdd:COG0458  212 DNVIIV----GIME--H---IEPAgvhsgdsicvapPQTLSDKE-YQRLRDATLKIARALGVV--GLCNIQFAVDDGRVY 279

                 ....*..
gi 6324343   377 FLELNPR 383
Cdd:COG0458  280 VIEVNPR 286
PRK12999 PRK12999
pyruvate carboxylase; Reviewed
698-767 4.35e-08

pyruvate carboxylase; Reviewed


Pssm-ID: 237263 [Multi-domain]  Cd Length: 1146  Bit Score: 59.00  E-value: 4.35e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6324343    698 NDPTQLRTPSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIV-QLLKQPGSTIVAGDIMAIM 767
Cdd:PRK12999 1074 GNPGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVkRVLVKAGDQVEAGDLLVEL 1144
PycA COG1038
Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the ...
698-767 5.41e-08

Pyruvate carboxylase [Energy production and conversion]; Pyruvate carboxylase is part of the Pathway/BioSystem: Urea cycle


Pssm-ID: 440660 [Multi-domain]  Cd Length: 1144  Bit Score: 58.55  E-value: 5.41e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6324343   698 NDPTQLRTPSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIV-QLLKQPGSTIVAGDIMAIM 767
Cdd:COG1038 1074 GNPGHIGAPMPGTVVKVLVKEGDEVKKGDPLLTIEAMKMETTITAPRDGTVkEVLVKEGDQVEAGDLLIEL 1144
CPSaseII_lrg TIGR01369
carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes ...
205-384 3.62e-07

carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]


Pssm-ID: 273581 [Multi-domain]  Cd Length: 1050  Bit Score: 55.78  E-value: 3.62e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     205 GTGVDTVHVDE-----KTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASE--GGGGKGIrqVEREEDFIALYHQ 277
Cdd:TIGR01369  116 GTPVEAIKKAEdrelfREAMKEIGEPVPESEIAHSVEEALAAAKEIGYPVIVRPAFtlGGTGGGI--AYNREELKEIAER 193
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     278 AANEIPGSPIFIMK-LAGrARHLEVQLLADQYGTNISLfgrdCSvqrrhqkiIEEA-PV--------TIAKAET-----F 342
Cdd:TIGR01369  194 ALSASPINQVLVEKsLAG-WKEIEYEVMRDSNDNCITV----CN--------MENFdPMgvhtgdsiVVAPSQTltdkeY 260
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 6324343     343 HEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRL 384
Cdd:TIGR01369  261 QMLRDASIKIIRELGIEGGCNVQFALNPDSGRYYVIEVNPRV 302
PylC COG2232
Pyrrolysine biosynthesis ligase PylC and related enzymes, ATP-grasp superfamily [Amino acid ...
102-410 3.51e-06

Pyrrolysine biosynthesis ligase PylC and related enzymes, ATP-grasp superfamily [Amino acid transport and metabolism];


Pssm-ID: 441833 [Multi-domain]  Cd Length: 370  Bit Score: 51.84  E-value: 3.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   102 DLEANAEYIRMADQYIEVPGGTNNNNYANVDLIVD-IAERADVDAVWAGWGHASEnpllPEKLSQSKRKVIFIGPPGNAM 180
Cdd:COG2232   32 DLFADLDTRALAERWVRLDAESCGFDLEDLPAALLeLAAADDPDGLVYGSGFENF----PELLERLARRLPLLGNPPEVV 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   181 RSLGDKISSTIVAQSAKVPCIPWSGTGvdtvhvdektglvsvDDDIYqkgcctspedglqkakrigfPVMIKASEGGGGK 260
Cdd:COG2232  108 RRVKDPLRFFALLDELGIPHPETRFEP---------------PPDPG--------------------PWLVKPIGGAGGW 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   261 GIRQVeREEDFIA--LYHQAanEIPGSPIFIMKLA--GRARHLEV--QLLAD------QYGTNISlfgrdcsvqrrhqki 328
Cdd:COG2232  153 HIRPA-DSEAPPApgRYFQR--YVEGTPASVLFLAdgSDARVLGFnrQLIGPagerpfRYGGNIG--------------- 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   329 ieeaPVTIAKAETfHEMEKAAVRLGK---LVGYVSAGTVEylyshDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQ 405
Cdd:COG2232  215 ----PLALPPALA-EEMRAIAEALVAalgLVGLNGVDFIL-----DGDGPYVLEVNPRPQASLDLYEDATGGNLFDAHLR 284

                 ....*
gi 6324343   406 IAMGI 410
Cdd:COG2232  285 ACRGE 289
PLN02735 PLN02735
carbamoyl-phosphate synthase
230-383 3.65e-06

carbamoyl-phosphate synthase


Pssm-ID: 215391 [Multi-domain]  Cd Length: 1102  Bit Score: 52.47  E-value: 3.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    230 GCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADQYG 309
Cdd:PLN02735  721 GIARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSDATEIDVDALADSEG 800
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    310 tNISLFG--------------RDCSVQRrhQKIIEEAPVTIAKAETfhemeKAAVRLGkLVGYVSagtVEYLYSHdDGKF 375
Cdd:PLN02735  801 -NVVIGGimehieqagvhsgdSACSLPT--QTIPSSCLATIRDWTT-----KLAKRLN-VCGLMN---CQYAITP-SGEV 867

                  ....*...
gi 6324343    376 YFLELNPR 383
Cdd:PLN02735  868 YIIEANPR 875
PRK08225 PRK08225
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
701-767 3.73e-06

acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 181304 [Multi-domain]  Cd Length: 70  Bit Score: 46.32  E-value: 3.73e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6324343    701 TQLRTPSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIV-QLLKQPGSTIVAGDIMAIM 767
Cdd:PRK08225    2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVkKINVQEGDFVNEGDVLLEI 69
carB PRK12815
carbamoyl phosphate synthase large subunit; Reviewed
232-435 1.18e-05

carbamoyl phosphate synthase large subunit; Reviewed


Pssm-ID: 237215 [Multi-domain]  Cd Length: 1068  Bit Score: 50.74  E-value: 1.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    232 CTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYhqAANEIPGSPIFIMKLAgRARHLEVQLLADqyGTN 311
Cdd:PRK12815  691 ATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYL--AENASQLYPILIDQFI-DGKEYEVDAISD--GED 765
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    312 ISLFGrdcsvqrrhqkI---IEEA------------PVTIAKAETfHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDgkFY 376
Cdd:PRK12815  766 VTIPG-----------IiehIEQAgvhsgdsiavlpPQSLSEEQQ-EKIRDYAIKIAKKLGFRGIMNIQFVLANDE--IY 831
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 6324343    377 FLELNPRlqvehpttemvSGVNLPAaqLQIAMGIPMHRISdIRTLYGmnpHSASEIDFE 435
Cdd:PRK12815  832 VLEVNPR-----------ASRTVPF--VSKATGVPLAKLA-TKVLLG---KSLAELGYP 873
carB PRK05294
carbamoyl-phosphate synthase large subunit;
230-383 3.43e-05

carbamoyl-phosphate synthase large subunit;


Pssm-ID: 235393 [Multi-domain]  Cd Length: 1066  Bit Score: 49.33  E-value: 3.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    230 GCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGRARHLEVQLLADqyG 309
Cdd:PRK05294  688 GTATSVEEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICD--G 765
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    310 TNISLFGrdcsvqrrhqkI---IEEA------------PVTIAKaETFHEMEKAAVRLGKLVGYVSAGTVEYLYshDDGK 374
Cdd:PRK05294  766 EDVLIGG-----------ImehIEEAgvhsgdsacslpPQTLSE-EIIEEIREYTKKLALELNVVGLMNVQFAV--KDDE 831

                  ....*....
gi 6324343    375 FYFLELNPR 383
Cdd:PRK05294  832 VYVIEVNPR 840
PRK07051 PRK07051
biotin carboxyl carrier domain-containing protein;
684-732 3.96e-05

biotin carboxyl carrier domain-containing protein;


Pssm-ID: 180811 [Multi-domain]  Cd Length: 80  Bit Score: 43.85  E-value: 3.96e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 6324343    684 RLSVDSMTTLLEVENDPTQLRTPSPGKLVKFLVENGEHIIKGQPYAEIE 732
Cdd:PRK07051   31 AVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79
LysX COG0189
Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport ...
107-402 5.81e-05

Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport and metabolism, Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis, Secondary metabolites biosynthesis, transport and catabolism]; Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 439959 [Multi-domain]  Cd Length: 289  Bit Score: 47.24  E-value: 5.81e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   107 AEYIRMADQYIEVPGGtnnnnyanvDLIVDIAERADVDAVW--AGWGHASENPLlpEKLSQSKRKVIfigPPGNAMRSLG 184
Cdd:COG0189   30 VEVIDPDDLTLDLGRA---------PELYRGEDLSEFDAVLprIDPPFYGLALL--RQLEAAGVPVV---NDPEAIRRAR 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   185 DKISSTIVAQSAKVPcIPwsgtgvdtvhvdeKTGLVSvdddiyqkgcctSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQ 264
Cdd:COG0189   96 DKLFTLQLLARAGIP-VP-------------PTLVTR------------DPDDLRAFLEELGGPVVLKPLDGSGGRGVFL 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   265 VEREEDFIAlYHQAANEIPGSPIFimklagrarhleVQ-LLADQYGTNISLF---GRD-CSVQRRHQKiiEEAPVTIA-- 337
Cdd:COG0189  150 VEDEDALES-ILEALTELGSEPVL------------VQeFIPEEDGRDIRVLvvgGEPvAAIRRIPAE--GEFRTNLArg 214
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6324343   338 -KAETFH---EMEKAAVRLGKLVGYVSAGtVEYLYshDDGKFYFLELNPRLQVEHptTEMVSGVNLPAA 402
Cdd:COG0189  215 gRAEPVEltdEERELALRAAPALGLDFAG-VDLIE--DDDGPLVLEVNVTPGFRG--LERATGVDIAEA 278
PLN02820 PLN02820
3-methylcrotonyl-CoA carboxylase, beta chain
1722-1989 7.70e-05

3-methylcrotonyl-CoA carboxylase, beta chain


Pssm-ID: 178415 [Multi-domain]  Cd Length: 569  Bit Score: 47.88  E-value: 7.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   1722 IFTITLVTCRSVGIGAYLVRLGQRAIQVEGQ-PIILTGAPAINKMLGREVYTSNLqlGGTQIMYN-NGVSHLTAVDDLAG 1799
Cdd:PLN02820  206 IPQIALVLGSCTAGGAYVPAMADESVIVKGNgTIFLAGPPLVKAATGEEVSAEDL--GGADVHCKvSGVSDHFAQDELHA 283
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   1800 VE---KIVEWMsYVPAKRNMPVPILETKDTWDRPV-------DFTPTN-DETYDVRWMIEGretesgfeygLFDKGSFFE 1868
Cdd:PLN02820  284 LAigrNIVKNL-HLAAKQGMENTLGSKNPEYKEPLydvkelrGIVPADhKQSFDVRSVIAR----------IVDGSEFDE 352
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   1869 TLSGWAKGVVVGRARLGGIPLGVIGvetrtvenlipadpanpNSAetliqepgqVWHPNSAFKTAQAInDFNNGEQLPMM 1948
Cdd:PLN02820  353 FKKNYGTTLVTGFARIYGQPVGIIG-----------------NNG---------ILFTESALKGAHFI-ELCAQRGIPLL 405
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 6324343   1949 ILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYI 1989
Cdd:PLN02820  406 FLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITII 446
carB PRK12815
carbamoyl phosphate synthase large subunit; Reviewed
233-384 1.07e-04

carbamoyl phosphate synthase large subunit; Reviewed


Pssm-ID: 237215 [Multi-domain]  Cd Length: 1068  Bit Score: 47.66  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    233 TSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMK-LAGrARHLEVQLLADQYGTN 311
Cdd:PRK12815  150 TSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEEsIAG-WKEIEYEVMRDRNGNC 228
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    312 ISLfgrdCSVQRrhqkiIEeaPV--------TIAKAET-----FHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFL 378
Cdd:PRK12815  229 ITV----CNMEN-----ID--PVgihtgdsiVVAPSQTltddeYQMLRSASLKIISALGVVGGCNIQFALDPKSKQYYLI 297

                  ....*.
gi 6324343    379 ELNPRL 384
Cdd:PRK12815  298 EVNPRV 303
PRK09282 PRK09282
pyruvate carboxylase subunit B; Validated
678-767 1.26e-04

pyruvate carboxylase subunit B; Validated


Pssm-ID: 236449 [Multi-domain]  Cd Length: 592  Bit Score: 47.14  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343    678 EEVAATRLSVDSMTTLLEVENdPTQLRTPSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIV-QLLKQPGS 756
Cdd:PRK09282  501 EEVVVEPLKEIVVGGRPRASA-PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVkEILVKEGD 579
                          90
                  ....*....|.
gi 6324343    757 TIVAGDIMAIM 767
Cdd:PRK09282  580 RVNPGDVLMEI 590
AceF COG0508
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component ...
709-767 1.38e-04

Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [Energy production and conversion]; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440274 [Multi-domain]  Cd Length: 77  Bit Score: 42.36  E-value: 1.38e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343   709 GKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIV-QLLKQPGSTIVAGDIMAIM 767
Cdd:COG0508   17 GTIVEWLVKEGDTVKEGDPLAEVETDKATMEVPAPAAGVLlEILVKEGDTVPVGAVIAVI 76
PRK05641 PRK05641
putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
706-762 6.84e-04

putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235540 [Multi-domain]  Cd Length: 153  Bit Score: 42.16  E-value: 6.84e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 6324343    706 PSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIVQ-LLKQPGSTIVAGD 762
Cdd:PRK05641   90 PMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKkILVKEGDTVDTGQ 147
ATP-grasp_3 pfam02655
ATP-grasp domain; No functional information or experimental verification of function is known ...
241-385 8.06e-04

ATP-grasp domain; No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).


Pssm-ID: 396979 [Multi-domain]  Cd Length: 160  Bit Score: 42.37  E-value: 8.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324343     241 KAKRIGFPVMIKASEGGGGKGIRQVE-REEDFIALYHQAANE-IPGSPIFIMKLAG--RARHLEV--QLLADQYGTNISL 314
Cdd:pfam02655   26 ELLREEKKYVVKPRDGCGGEGVRKVEnGREDEAFIENVLVQEfIEGEPLSVSLLSDgeKALPLSVnrQYIDNGGSGFVYA 105
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6324343     315 FGRDCSVQRRHQKIIEEApvtiakaetfhemEKAAVRLGKLVGYVSagtVEYLYShdDGKFYFLELNPRLQ 385
Cdd:pfam02655  106 GNVTPSRTELKEEIIELA-------------EEVVECLPGLRGYVG---VDLVLK--DNEPYVIEVNPRIT 158
PRK14016 PRK14016
cyanophycin synthetase; Provisional
232-285 1.17e-03

cyanophycin synthetase; Provisional


Pssm-ID: 237586 [Multi-domain]  Cd Length: 727  Bit Score: 43.99  E-value: 1.17e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6324343    232 CTSPEDGLQKAKRIGFPVMIKASEGGGGKGIR-QVEREEDFIALYHQAANE---------IPGS 285
Cdd:PRK14016  235 VTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTvNITTREEIEAAYAVASKEssdviveryIPGK 298
PRK06549 PRK06549
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
706-762 2.53e-03

acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235826 [Multi-domain]  Cd Length: 130  Bit Score: 40.18  E-value: 2.53e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 6324343    706 PSPGKLVKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENGIV-QLLKQPGSTIVAGD 762
Cdd:PRK06549   67 PMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVtAIHVTPGQVVNPGD 124
AccB COG0511
Biotin carboxyl carrier protein [Lipid transport and metabolism]; Biotin carboxyl carrier ...
704-766 8.24e-03

Biotin carboxyl carrier protein [Lipid transport and metabolism]; Biotin carboxyl carrier protein is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440277 [Multi-domain]  Cd Length: 136  Bit Score: 38.72  E-value: 8.24e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6324343   704 RTPSPGKlvKFLVENGEHIIKGQPYAEIEVMKMQMPLVSQENG-IVQLLKQPGSTIVAGDIMAI 766
Cdd:COG0511   73 RAPSPGA--KPFVKVGDKVKAGDTLCIIEAMKMMNEIEAPVSGtVVEILVENGQPVEYGQPLFV 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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