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ribosomal 60S subunit protein L7A [Saccharomyces cerevisiae S288C]
uL30 family ribosomal protein( domain architecture ID 11492225)
uL30 family ribosomal protein binds to G-rich structures in 28S rRNA and in mRNAs, plays a regulatory role in the translation apparatus and inhibits cell-free translation of mRNAs
List of domain hits
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Name | Accession | Description | Interval | E-value | ||||
uL30_euk | TIGR01310 | 60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S ... |
10-244 | 6.18e-126 | ||||
60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S (cytosolic) ribosomal protein uL30 (previously L7) and paralogs that may or may not also be uL30. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues). : Pssm-ID: 273548 [Multi-domain] Cd Length: 235 Bit Score: 356.29 E-value: 6.18e-126
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Name | Accession | Description | Interval | E-value | ||||
uL30_euk | TIGR01310 | 60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S ... |
10-244 | 6.18e-126 | ||||
60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S (cytosolic) ribosomal protein uL30 (previously L7) and paralogs that may or may not also be uL30. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues). Pssm-ID: 273548 [Multi-domain] Cd Length: 235 Bit Score: 356.29 E-value: 6.18e-126
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Ribosomal_L7_archeal_euk | cd01657 | Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds ... |
83-244 | 1.22e-81 | ||||
Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes. Pssm-ID: 100099 Cd Length: 159 Bit Score: 241.28 E-value: 1.22e-81
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Ribosomal_L30_N | pfam08079 | Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal ... |
9-79 | 1.08e-18 | ||||
Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Pssm-ID: 462360 Cd Length: 72 Bit Score: 77.24 E-value: 1.08e-18
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rpl30p | PRK06049 | 50S ribosomal protein L30P; Reviewed |
82-243 | 3.03e-17 | ||||
50S ribosomal protein L30P; Reviewed Pssm-ID: 235683 Cd Length: 154 Bit Score: 76.00 E-value: 3.03e-17
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RpmD | COG1841 | Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ... |
82-137 | 1.09e-04 | ||||
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit Pssm-ID: 441446 Cd Length: 58 Bit Score: 38.87 E-value: 1.09e-04
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Name | Accession | Description | Interval | E-value | ||||
uL30_euk | TIGR01310 | 60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S ... |
10-244 | 6.18e-126 | ||||
60S ribosomal protein uL30, eukaryotic form; This model describes the eukaryotic 60S (cytosolic) ribosomal protein uL30 (previously L7) and paralogs that may or may not also be uL30. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues). Pssm-ID: 273548 [Multi-domain] Cd Length: 235 Bit Score: 356.29 E-value: 6.18e-126
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Ribosomal_L7_archeal_euk | cd01657 | Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds ... |
83-244 | 1.22e-81 | ||||
Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes. Pssm-ID: 100099 Cd Length: 159 Bit Score: 241.28 E-value: 1.22e-81
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Ribosomal_L30_N | pfam08079 | Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal ... |
9-79 | 1.08e-18 | ||||
Ribosomal L30 N-terminal domain; This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Pssm-ID: 462360 Cd Length: 72 Bit Score: 77.24 E-value: 1.08e-18
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rpl30p | PRK06049 | 50S ribosomal protein L30P; Reviewed |
82-243 | 3.03e-17 | ||||
50S ribosomal protein L30P; Reviewed Pssm-ID: 235683 Cd Length: 154 Bit Score: 76.00 E-value: 3.03e-17
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Ribosomal_L30_like | cd00355 | Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ... |
85-137 | 7.01e-16 | ||||
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea. Pssm-ID: 100098 [Multi-domain] Cd Length: 53 Bit Score: 69.36 E-value: 7.01e-16
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Ribosomal_L30 | pfam00327 | Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7. |
84-134 | 1.01e-12 | ||||
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7. Pssm-ID: 459762 [Multi-domain] Cd Length: 51 Bit Score: 60.79 E-value: 1.01e-12
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RpmD | COG1841 | Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ... |
82-137 | 1.09e-04 | ||||
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit Pssm-ID: 441446 Cd Length: 58 Bit Score: 38.87 E-value: 1.09e-04
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Blast search parameters | ||||
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