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Conserved domains on  [gi|6321335|ref|NP_011412|]
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ribosomal 60S subunit protein L28 [Saccharomyces cerevisiae S288C]

Protein Classification

uL15 family ribosomal protein( domain architecture ID 10015256)

uL15 family ribosomal protein is a component of the large ribosomal subunit of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell

Gene Ontology:  GO:0006412|GO:0003735|GO:0015934
PubMed:  24524803|22550233

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PTZ00160 PTZ00160
60S ribosomal protein L27a; Provisional
1-149 3.15e-84

60S ribosomal protein L27a; Provisional


:

Pssm-ID: 185489  Cd Length: 147  Bit Score: 243.39  E-value: 3.15e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321335     1 MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWT 80
Cdd:PTZ00160   1 MPTRFKKCRKMRGHVSHGYGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRHFHLKKNKYYCPTINVDKLWS 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6321335    81 LIPEDKRdqYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELIA 149
Cdd:PTZ00160  81 LVPEETR--YKYAKKGDKAPVIDVTKAGYFKVLGKGHLPKQPVIVKARYFSKKAEKKIKAVGGACVLTA 147
 
Name Accession Description Interval E-value
PTZ00160 PTZ00160
60S ribosomal protein L27a; Provisional
1-149 3.15e-84

60S ribosomal protein L27a; Provisional


Pssm-ID: 185489  Cd Length: 147  Bit Score: 243.39  E-value: 3.15e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321335     1 MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWT 80
Cdd:PTZ00160   1 MPTRFKKCRKMRGHVSHGYGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRHFHLKKNKYYCPTINVDKLWS 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6321335    81 LIPEDKRdqYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELIA 149
Cdd:PTZ00160  81 LVPEETR--YKYAKKGDKAPVIDVTKAGYFKVLGKGHLPKQPVIVKARYFSKKAEKKIKAVGGACVLTA 147
Ribosomal_L27A pfam00828
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
28-146 2.82e-24

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


Pssm-ID: 459951  Cd Length: 125  Bit Score: 90.66  E-value: 2.82e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321335     28 HPGGRGMAGGQHHHrinmDKYHPGY----------FGKVGMRyfHKQQAHFWKPVLNLDKLWTLIPEDKRDQY----LKS 93
Cdd:pfam00828   3 KTGGRGHKGQKSRS----GKVRPGFeggqmplyrrLPKRGFK--HREYNIFRYAPVNLGKLQELIDEGRLDEGkvidLEA 76
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 6321335     94 ASKetAPVIDTLAAGYgKILGKGRIPnVPVIVKARFVSKLAEEKIRAAGGVVE 146
Cdd:pfam00828  77 LKE--AGLVKKKKDGV-KLLGKGELT-KKLTVKASAFSKSAIEKIEAAGGKVE 125
RplO COG0200
Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 ...
111-149 3.28e-06

Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439970  Cd Length: 148  Bit Score: 43.85  E-value: 3.28e-06
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 6321335  111 KILGKGRIpNVPVIVKARFVSKLAEEKIRAAGGVVELIA 149
Cdd:COG0200 111 KILGNGEL-TKKLTVKAHKFSKSAKEKIEAAGGKVEVIE 148
 
Name Accession Description Interval E-value
PTZ00160 PTZ00160
60S ribosomal protein L27a; Provisional
1-149 3.15e-84

60S ribosomal protein L27a; Provisional


Pssm-ID: 185489  Cd Length: 147  Bit Score: 243.39  E-value: 3.15e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321335     1 MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGQHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWT 80
Cdd:PTZ00160   1 MPTRFKKCRKMRGHVSHGYGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRHFHLKKNKYYCPTINVDKLWS 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6321335    81 LIPEDKRdqYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELIA 149
Cdd:PTZ00160  81 LVPEETR--YKYAKKGDKAPVIDVTKAGYFKVLGKGHLPKQPVIVKARYFSKKAEKKIKAVGGACVLTA 147
Ribosomal_L27A pfam00828
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
28-146 2.82e-24

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


Pssm-ID: 459951  Cd Length: 125  Bit Score: 90.66  E-value: 2.82e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321335     28 HPGGRGMAGGQHHHrinmDKYHPGY----------FGKVGMRyfHKQQAHFWKPVLNLDKLWTLIPEDKRDQY----LKS 93
Cdd:pfam00828   3 KTGGRGHKGQKSRS----GKVRPGFeggqmplyrrLPKRGFK--HREYNIFRYAPVNLGKLQELIDEGRLDEGkvidLEA 76
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 6321335     94 ASKetAPVIDTLAAGYgKILGKGRIPnVPVIVKARFVSKLAEEKIRAAGGVVE 146
Cdd:pfam00828  77 LKE--AGLVKKKKDGV-KLLGKGELT-KKLTVKASAFSKSAIEKIEAAGGKVE 125
RplO COG0200
Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 ...
111-149 3.28e-06

Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439970  Cd Length: 148  Bit Score: 43.85  E-value: 3.28e-06
                        10        20        30
                ....*....|....*....|....*....|....*....
gi 6321335  111 KILGKGRIpNVPVIVKARFVSKLAEEKIRAAGGVVELIA 149
Cdd:COG0200 111 KILGNGEL-TKKLTVKAHKFSKSAKEKIEAAGGKVEVIE 148
RPL18A COG1727
Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
110-143 1.99e-03

Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L18E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441333  Cd Length: 114  Bit Score: 35.94  E-value: 1.99e-03
                        10        20        30
                ....*....|....*....|....*....|....
gi 6321335  110 GKILGKGRIpNVPVIVKARFVSKLAEEKIRAAGG 143
Cdd:COG1727  61 GKVLGSGKL-SKKVTVAAFSFSETAAEKIEEAGG 93
PRK04005 PRK04005
50S ribosomal protein L18e; Provisional
110-143 2.17e-03

50S ribosomal protein L18e; Provisional


Pssm-ID: 235196  Cd Length: 111  Bit Score: 35.60  E-value: 2.17e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 6321335   110 GKILGKGRIpNVPVIVKARFVSKLAEEKIRAAGG 143
Cdd:PRK04005  57 GKVLGSGKL-DHKVTVAALSFSETAKEKIEEAGG 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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