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Conserved domains on  [gi|63025102|ref|YP_232796|]
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cytochrome b (mitochondrion) [Geodia neptuni]

Protein Classification

cytochrome b( domain architecture ID 11475884)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00053
cytochrome b; Provisional
 1-381 0e+00

cytochrome b; Provisional


:

Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 675.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    1 MIKTIRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYIL 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   81 RYLHANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDD 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  161 IVKWVWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGI 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  241 CVLVFLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQ 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 63025102  321 LSKFFFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIVPIVGILENRLLKLV 381
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKLV 381
 
Name Accession Description Interval E-value
CYTB MTH00053
cytochrome b; Provisional
 1-381 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 675.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    1 MIKTIRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYIL 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   81 RYLHANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDD 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  161 IVKWVWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGI 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  241 CVLVFLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQ 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 63025102  321 LSKFFFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIVPIVGILENRLLKLV 381
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKLV 381
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
10-374 1.41e-133

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 387.22  E-value: 1.41e-133
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  10 PIISLVNNiFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGAS 89
Cdd:COG1290  19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  90 MFFFCVYLHIGRGIYYGSYSKI--IVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWG 167
Cdd:COG1290  98 LFFAAVYLHMFRGFFYGAYKKPreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102 168 GFSVSNATLNRFFSLHYL-LPFLLIGLALVHLIALHEDGSNNPIGI----RSDIDKVPFHHYYTIKDFFGAIALLIGICV 242
Cdd:COG1290 178 GEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102 243 LVFLLPylLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIP--NKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQ 320
Cdd:COG1290 258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....
gi 63025102 321 LSKFFFWFLVGDFFLLTWIGGQPveEPYILIGQLVSLFYFAYFLIIVPIVGILE 374
Cdd:COG1290 336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 2.66e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 259.99  E-value: 2.66e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  10 PIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  90 MFFFCVYLHIGRGIYYGSYSK--IIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 63025102 168 GFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.07e-75

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 232.27  E-value: 1.07e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    19 FVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGASMFFFCVYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    99 IGRGIYYGSYSK--IIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWGGFSVSNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYprELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 63025102   177 NRFFSLHYLLPFLLIGLALVHLIALHEDG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 231-308 1.84e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.26  E-value: 1.84e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 63025102   231 FGAIALLIGICVLVfllPYLLGDAenfkqANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHL 308
Cdd:TIGR01156  45 LGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFI 114
 
Name Accession Description Interval E-value
CYTB MTH00053
cytochrome b; Provisional
 1-381 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 675.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    1 MIKTIRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYIL 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   81 RYLHANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDD 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  161 IVKWVWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGI 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  241 CVLVFLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQ 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 63025102  321 LSKFFFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIVPIVGILENRLLKLV 381
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKLV 381
CYTB MTH00119
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 609.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    1 MIKTIRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYIL 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   81 RYLHANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDD 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  161 IVKWVWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGI 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  241 CVLVFLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQ 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  321 LSKFFFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIVPIVGILENRLLKL 380
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00022
cytochrome b; Validated
 5-379 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 592.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    5 IRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLH 84
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   85 ANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKW 164
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  165 VWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGICVLV 244
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  245 FLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQLSKF 324
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 63025102  325 FFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIVPIVGILENRLLK 379
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 585.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   12 ISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGASMF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   92 FFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWGGFSV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  172 SNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGICVLVFLLPYLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  252 GDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQLSKFFFWFLVG 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 63025102  332 DFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLII 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00100
cytochrome b; Provisional
 5-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 583.91  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    5 IRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLH 84
Cdd:MTH00100   4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   85 ANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKW 164
Cdd:MTH00100  84 ANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  165 VWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGICVLV 244
Cdd:MTH00100 164 IWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLV 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  245 FLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQLSKF 324
Cdd:MTH00100 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQC 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 63025102  325 FFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIVPIVGILENRLLK 379
Cdd:MTH00100 324 LFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00191
cytochrome b; Provisional
 5-369 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 581.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    5 IRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   85 ANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  165 VWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGICVLV 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  245 FLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQLSKF 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 63025102  325 FFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIVPI 369
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00074
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 576.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    1 MIKTIRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYIL 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   81 RYLHANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDD 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  161 IVKWVWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGI 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  241 CVLVFLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQ 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  321 LSKFFFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIVPIVGILENRLLKL 380
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00131
cytochrome b; Provisional
 4-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 575.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    4 TIRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYL 83
Cdd:MTH00131   3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   84 HANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVK 163
Cdd:MTH00131  83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  164 WVWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGICVL 243
Cdd:MTH00131 163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  244 VFLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQLSK 323
Cdd:MTH00131 243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 63025102  324 FFFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIVPIVGILENRLLK 379
Cdd:MTH00131 323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00145
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 574.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    1 MIKTIRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYIL 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   81 RYLHANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDD 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  161 IVKWVWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGI 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  241 CVLVFLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQ 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 63025102  321 LSKFFFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIvPIVGILENRLL 378
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 5-378 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 558.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    5 IRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   85 ANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKW 164
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  165 VWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGICVLV 244
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  245 FLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQLSKF 324
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 63025102  325 FFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIVPIVGILENRLL 378
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
 1-379 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 538.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    1 MIKTIRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYIL 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   81 RYLHANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDD 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  161 IVKWVWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGI 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  241 CVLVFLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQ 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 63025102  321 LSKFFFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLIIvPIVGILENRLLK 379
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN-PLLMKLWDKLLK 378
CYTB MTH00224
cytochrome b; Provisional
 1-379 2.51e-167

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 472.87  E-value: 2.51e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    1 MIKTIRKENPIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYIL 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   81 RYLHANGASMFFFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDD 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  161 IVKWVWGGFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGI 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  241 CVLVFLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQ 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 63025102  321 LSKFFFWFLVGDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFlIIVPIVGILENRLLK 379
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYF-IISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 17-375 1.36e-152

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 435.52  E-value: 1.36e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   17 NIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGASMFFFCVY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   97 LHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWGGFSVSNATL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  177 NRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIaLLIGICVLVFLLPY---LLGD 253
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFL-ILFGVFVIIGIEPRietLLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  254 AENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQLSKFFFWFLVGDF 333
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 63025102  334 FLLTWIGGQPV-EEPYILIGQLVSLFYFAYFLIIVPIVGILEN 375
Cdd:MTH00033 332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
10-374 1.41e-133

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 387.22  E-value: 1.41e-133
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  10 PIISLVNNiFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGAS 89
Cdd:COG1290  19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  90 MFFFCVYLHIGRGIYYGSYSKI--IVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWG 167
Cdd:COG1290  98 LFFAAVYLHMFRGFFYGAYKKPreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102 168 GFSVSNATLNRFFSLHYL-LPFLLIGLALVHLIALHEDGSNNPIGI----RSDIDKVPFHHYYTIKDFFGAIALLIGICV 242
Cdd:COG1290 178 GEFPGDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102 243 LVFLLPylLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIP--NKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQ 320
Cdd:COG1290 258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....
gi 63025102 321 LSKFFFWFLVGDFFLLTWIGGQPveEPYILIGQLVSLFYFAYFLIIVPIVGILE 374
Cdd:COG1290 336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 15-366 2.98e-121

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 354.63  E-value: 2.98e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   15 VNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGASMFFFC 94
Cdd:MTH00086   3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   95 VYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWGGFSVSNA 174
Cdd:MTH00086  83 LYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSA 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  175 TLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGIcVLVFLLPYLLGDA 254
Cdd:MTH00086 163 TLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFI-IFSLFYPFNLGDP 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  255 ENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHksrFRGLSFRQLSKFFFWFLVGDFF 334
Cdd:MTH00086 242 EMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVVNV 318

                        330       340       350
                 ....*....|....*....|....*....|..
gi 63025102  335 LLTWIGGQPVEEPYILIGQLVSLFYFAYFLII 366
Cdd:MTH00086 319 ILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
CYTB MTH00046
cytochrome b; Validated
 12-365 3.20e-99

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 298.44  E-value: 3.20e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   12 ISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGASMF 91
Cdd:MTH00046   2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   92 FFCVYLHIGRGIYYGSYSKIIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWGGFSV 171
Cdd:MTH00046  82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  172 SNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSNNPIGIRSDI-DKVPFHHYYTIKDFFGAIALLIGICVLVFLLPYL 250
Cdd:MTH00046 162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  251 LGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIaLLASILVLFFLPHLHKSRFRGLsFRQLskfFFWFLV 330
Cdd:MTH00046 242 VLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV-WRQV---NFWLIV 316

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 63025102  331 GDFFLLTWIGGQPVEEPYILIGQLVSLFYFAYFLI 365
Cdd:MTH00046 317 SLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 2.66e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 259.99  E-value: 2.66e-86
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  10 PIISLVNNIFVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  90 MFFFCVYLHIGRGIYYGSYSK--IIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 63025102 168 GFSVSNATLNRFFSLHYLLPFLLIGLALVHLIALHEDGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.07e-75

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 232.27  E-value: 1.07e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    19 FVDLPAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGASMFFFCVYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    99 IGRGIYYGSYSK--IIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWGGFSVSNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYprELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 63025102   177 NRFFSLHYLLPFLLIGLALVHLIALHEDG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.55e-46

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.17  E-value: 1.55e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   259 QANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHKSRFRGLSFRQLSKFFFWFLVGDFFLLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 63025102   339 IGGQPVEEPYILIGQLVSLFY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 4.92e-46

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 154.73  E-value: 4.92e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102 208 NPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGICVLVFLLPYLLGDAENFKQANPLVTPEHIKPEWYFLFAYAILRSIPN 287
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 63025102 288 KLGGVIALLASILVLFFLPHLHKSRFRGlSFRQLSKFFFWFLVGDFFLLTWIGGQPVEEPYILIGQL 354
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 1.50e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 140.23  E-value: 1.50e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   23 PAPSNISYLWNFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGASMFFFCVYLHIGRG 102
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  103 IYYGSYSKI--IVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWGGFSVSNATLNRFF 180
Cdd:PRK03735 113 FFTGGYKKPreLNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180       190
                 ....*....|....*....|....*....|.
gi 63025102  181 SLH-YLLPFLLIGLALVHLIALHEDGSNNPI 210
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 5.87e-36

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 128.90  E-value: 5.87e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102    89 SMFFFCVYLHIGRGIYYGSYSK--IIVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   167 GGFSVSNATLNRFFSLH-YLLPFLLIGLALVHLIALHEDGSNNPIGIRSDIDKVPFHHYYTIKDFFGAIALLIGICVLVF 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHiLLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 63025102   246 LLPYLLGDA 254
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 22-210 8.04e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 116.74  E-value: 8.04e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102   22 LPAPSNISYLwnFGSLLGVCLIIQVITGIFLAMHYCADVNLAFTSVVHITGDVNYGYILRYLHANGASMFFFCVYLHIGR 101
Cdd:CHL00070  26 VPPHVNIFYC--LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  102 GIYYGSYSKI--IVWNVGVLLFLLMIITSFIGYVLPWGQMSFWAATVITNLLSAIPYIGDDIVKWVWGGFSVSNATLNRF 179
Cdd:CHL00070 104 VYLTGGFKKPreLTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRF 183

                        170       180       190
                 ....*....|....*....|....*....|..
gi 63025102  180 FSLH-YLLPFLLIGLALVHLIALHEDGSNNPI 210
Cdd:CHL00070 184 YSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 232-306 7.08e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.19  E-value: 7.08e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 63025102 232 GAIALLIGICVLVfllPYLLGDAenfkqANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLP 306
Cdd:COG5679  47 GTIALCIGLAVLD---PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVP 113
petD CHL00058
cytochrome b6/f complex subunit IV
 231-340 2.27e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 58.86  E-value: 2.27e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 63025102  231 FGAIALLIGICVLVfllPYLLGDAenfkqANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHLHK 310
Cdd:CHL00058  45 LGTIACNVGLAVLE---PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLEN 116

                         90       100       110
                 ....*....|....*....|....*....|.
gi 63025102  311 -SRFRGLSFRQLSKFFfwFLVGdFFLLTWIG 340
Cdd:CHL00058 117 vNKFQNPFRRPVATTV--FLIG-TAVALWLG 144
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 231-308 1.84e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.26  E-value: 1.84e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 63025102   231 FGAIALLIGICVLVfllPYLLGDAenfkqANPLVTPEHIKPEWYFLFAYAILRSIPNKLGGVIALLASILVLFFLPHL 308
Cdd:TIGR01156  45 LGTIACVVGLAVLD---PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFI 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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