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Conserved domains on  [gi|629679716|gb|AHY88137|]
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cytochrome b, partial (mitochondrion) [Acanthoptila nipalensis]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-315 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 614.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00119  66 SVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGAT 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00119 146 VITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYF 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00119 226 SYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLM 305

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLFPLASILENKFLKL 315
Cdd:MTH00119 306 PFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-315 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 614.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00119  66 SVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGAT 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00119 146 VITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYF 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00119 226 SYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLM 305

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLFPLASILENKFLKL 315
Cdd:MTH00119 306 PFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-309 4.21e-109

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 322.51  E-value: 4.21e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----LNkevWNIGVVLLLALMATAFVGYVLPWGQMS 75
Cdd:COG1290   74 SVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLS 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  76 FWGATVITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIH-FLLPFVIVGLTLVHLTLLHETGSNNPLGI----PSD 150
Cdd:COG1290  151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEK 230

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 151 CDKIPFHPYYTIKDILGFVLMISILVALALFTPNllGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIP--NKLGGVI 228
Cdd:COG1290  231 VDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVI 308

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 229 ALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPvePPFILIGQLASISYFTIILVLFPLASIL 308
Cdd:COG1290  309 AMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFI 386


                 .
gi 629679716 309 E 309
Cdd:COG1290  387 E 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-142 3.18e-60

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 191.04  E-value: 3.18e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLN--KEVWNIGVVLLLALMATAFVGYVLPWGQMSFWG 78
Cdd:cd00284   57 SVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 629679716  79 ATVITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSN 142
Cdd:cd00284  137 ATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-140 9.38e-53

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 171.41  E-value: 9.38e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716    1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYG--SYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWG 78
Cdd:pfam00033  48 SVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 629679716   79 ATVITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETG 140
Cdd:pfam00033 128 ATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 172-261 6.45e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.51  E-value: 6.45e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  172 ISILVALALFTPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLMPLLHT-SKLRS 250
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|.
gi 629679716  251 MTFRPLSQILF 261
Cdd:TIGR01156 123 PFRRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-315 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 614.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00119  66 SVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGAT 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00119 146 VITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYF 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00119 226 SYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLM 305

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLFPLASILENKFLKL 315
Cdd:MTH00119 306 PFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00100
cytochrome b; Provisional
 1-314 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 566.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00100  65 SVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGAT 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00100 145 VITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYY 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00100 225 TIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAII 304

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLFPLASILENKFLK 314
Cdd:MTH00100 305 PLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00131
cytochrome b; Provisional
 1-314 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 559.65  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00131  65 SVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGAT 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00131 145 VITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYF 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00131 225 SYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVV 304

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLFPLASILENKFLK 314
Cdd:MTH00131 305 PILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00074
cytochrome b; Provisional
 1-315 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 543.12  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00074  66 SVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGAT 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00074 146 VITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYF 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00074 226 SYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLI 305

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLFPLASILENKFLKL 315
Cdd:MTH00074 306 PMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-304 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 517.55  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00191  62 SVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGAT 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00191 142 VITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYF 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00191 222 SYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLL 301

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLFPL 304
Cdd:MTH00191 302 PLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-302 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 506.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00156  55 SVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGAT 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00156 135 VITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYF 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00156 215 TFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMIL 294

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLF 302
Cdd:MTH00156 295 PFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-313 1.72e-180

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 503.28  E-value: 1.72e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00145  66 SVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGAT 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00145 146 VITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYY 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00145 226 TIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFL 305

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLfPLASILENKFL 313
Cdd:MTH00145 306 PLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-313 3.04e-179

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 500.00  E-value: 3.04e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00034  65 SVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAAT 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00034 145 VITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYF 224

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00034 225 TTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLV 304

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLFPLASILENKFL 313
Cdd:MTH00034 305 PILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00016
cytochrome b; Validated
 1-314 1.02e-168

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 473.40  E-value: 1.02e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00016  66 SVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGAT 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00016 146 VITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYY 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00016 226 TSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFL 305

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTiILVLFPLASILENKFLK 314
Cdd:MTH00016 306 PFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-315 2.24e-152

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 432.21  E-value: 2.24e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00053  66 SVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAAT 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00053 146 VITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYY 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00053 226 VLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFL 305

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLFPLASILENKFLKL 315
Cdd:MTH00053 306 PYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 1-314 8.05e-152

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 430.66  E-value: 8.05e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00022  64 SVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGAT 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00022 144 VITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYY 223

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00022 224 TSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFL 303

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLFPLASILENKFLK 314
Cdd:MTH00022 304 PLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-314 1.43e-140

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 401.99  E-value: 1.43e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00224  66 SVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGAT 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00224 146 VITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYY 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLM 240
Cdd:MTH00224 226 SIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFIL 305

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 629679716 241 PLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTiILVLFPLASILENKFLK 314
Cdd:MTH00224 306 PLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-312 4.45e-114

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 334.98  E-value: 4.45e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGAT 80
Cdd:MTH00033  62 SVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAAT 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  81 VITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYY 160
Cdd:MTH00033 142 VITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYF 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 161 TIKDILGFVLMISILVALAL--FTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLF 238
Cdd:MTH00033 222 TIKDILGFLILFGVFVIIGIepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLL 301

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 629679716 239 LMPLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPV-EPPFILIGQLASISYFTIILVLFPLASILENKF 312
Cdd:MTH00033 302 LMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLF 376
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-309 4.21e-109

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 322.51  E-value: 4.21e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----LNkevWNIGVVLLLALMATAFVGYVLPWGQMS 75
Cdd:COG1290   74 SVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLS 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  76 FWGATVITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIH-FLLPFVIVGLTLVHLTLLHETGSNNPLGI----PSD 150
Cdd:COG1290  151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEK 230

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 151 CDKIPFHPYYTIKDILGFVLMISILVALALFTPNllGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIP--NKLGGVI 228
Cdd:COG1290  231 VDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVI 308

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 229 ALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVTNLLILTWVGSQPvePPFILIGQLASISYFTIILVLFPLASIL 308
Cdd:COG1290  309 AMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFI 386


                 .
gi 629679716 309 E 309
Cdd:COG1290  387 E 387
CYTB MTH00086
cytochrome b; Provisional
 9-302 7.77e-94

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 282.21  E-value: 7.77e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   9 VQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSA 88
Cdd:MTH00086  62 VNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSV 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  89 IPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYYTIKDILGF 168
Cdd:MTH00086 142 IPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 169 VlMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLMPLLHTSkl 248
Cdd:MTH00086 222 I-FWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY-- 298

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 629679716 249 rSMTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISYFTIILVLF 302
Cdd:MTH00086 299 -TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 11-302 1.55e-77

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 240.66  E-value: 1.55e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  11 FGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIP 90
Cdd:MTH00046  66 FTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVP 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  91 YIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSNNPLGIPSD-CDKIPFHPYYTIKDILGFV 169
Cdd:MTH00046 146 IVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFM 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 170 LMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIaLAASVLVLFLMPLLHTSKLR 249
Cdd:MTH00046 226 VVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVY 304

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 629679716 250 SMtfrpLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLASISyftIILVLF 302
Cdd:MTH00046 305 SV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL---MVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-142 3.18e-60

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 191.04  E-value: 3.18e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLN--KEVWNIGVVLLLALMATAFVGYVLPWGQMSFWG 78
Cdd:cd00284   57 SVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 629679716  79 ATVITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETGSN 142
Cdd:cd00284  137 ATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 143-290 1.08e-55

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 177.45  E-value: 1.08e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 143 NPLGIPSDCDKIPFHPYYTIKDILGFVLMISILVALALFTPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPN 222
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 629679716 223 KLGGVIALAASVLVLFLMPLLHTSKLRSmTFRPLSQILFWTLVTNLLILTWVGSQPVEPPFILIGQLA 290
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-140 9.38e-53

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 171.41  E-value: 9.38e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716    1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYG--SYLNKEVWNIGVVLLLALMATAFVGYVLPWGQMSFWG 78
Cdd:pfam00033  48 SVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 629679716   79 ATVITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIHFLLPFVIVGLTLVHLTLLHETG 140
Cdd:pfam00033 128 ATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
194-294 5.62e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.80  E-value: 5.62e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  194 PANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLMPLLHTSKLRSMTFRPLSQILFWTLVTNLLILTW 273
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 629679716  274 VGSQPVEPPFILIGQLASISY 294
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
24-189 2.13e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 136.22  E-value: 2.13e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   24 SFFFICIYFHIGRGIYYGSYLNKE--VWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW*W 101
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  102 GGFSVDNPTLTRFFAIHF-LLPFVIVGLTLVHLTLLHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFVLMISILVALAL 180
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 629679716  181 FTPNLLGDP 189
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-145 1.72e-22

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 93.24  E-value: 1.72e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----LNkevWNIGVVLLLALMATAFVGYVLPWGQMS 75
Cdd:PRK03735  76 SVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYkkpreLN---WVVGVLIFFVTVGLGFTGYLLPWDQKA 152

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 629679716  76 FWGATVITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIH-FLLPFVIVGLTLVHLTLLHETGSNNPL 145
Cdd:PRK03735 153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-124 2.51e-19

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 84.39  E-value: 2.51e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716   1 SVAHMCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE--VWNIGVVLLLALMATAFVGYVLPWGQMSFWG 78
Cdd:CHL00070  68 SVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWA 147

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 629679716  79 ATVITNLFSAIPYIGQTLVEW*WGGFSVDNPTLTRFFAIH-FLLPFV 124
Cdd:CHL00070 148 VKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLL 194
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 172-266 8.84e-14

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 67.90  E-value: 8.84e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 172 ISILVALALFTPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLMPLLHT-SKLRS 250
Cdd:COG5679   49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQN 123

                         90
                 ....*....|....*...
gi 629679716 251 MTFRPLSQ--ILFWTLVT 266
Cdd:COG5679  124 PFRRPVATavFLFGTLVT 141
petD CHL00058
cytochrome b6/f complex subunit IV
 165-261 6.71e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 65.41  E-value: 6.71e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716 165 ILGfvlMISILVALALFTPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLMPLL- 243
Cdd:CHL00058  44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                         90
                 ....*....|....*...
gi 629679716 244 HTSKLRSMTFRPLSQILF 261
Cdd:CHL00058 116 NVNKFQNPFRRPVATTVF 133
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 172-261 6.45e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.51  E-value: 6.45e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679716  172 ISILVALALFTPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVIALAASVLVLFLMPLLHT-SKLRS 250
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|.
gi 629679716  251 MTFRPLSQILF 261
Cdd:TIGR01156 123 PFRRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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