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Conserved domains on  [gi|629679352|gb|AHY87955|]
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cytochrome b, partial (mitochondrion) [Liocichla phoenicea]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-350 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 690.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00119  31 WWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLY 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00119 111 KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLI 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00119 191 AGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIK 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00119 271 PEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350

                        330       340       350
                 ....*....|....*....|....*....|
gi 629679352 321 IGQLASISYFTIILVLFPLASILENKMLKL 350
Cdd:MTH00119 351 IGQLASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-350 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 690.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00119  31 WWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLY 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00119 111 KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLI 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00119 191 AGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIK 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00119 271 PEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350

                        330       340       350
                 ....*....|....*....|....*....|
gi 629679352 321 IGQLASISYFTIILVLFPLASILENKMLKL 350
Cdd:MTH00119 351 IGQLASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-344 1.85e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 375.67  E-value: 1.85e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSY-- 78
Cdd:COG1290   39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  79 ---LNketWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-F 154
Cdd:COG1290  119 preLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvL 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 155 LLPFVIAGLTLVHLTLLHDTGSNNPLGI----PSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNllGDPENFTPA 230
Cdd:COG1290  196 LLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPA 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 231 NPLATPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTW 308
Cdd:COG1290  274 NPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTI 353

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 629679352 309 VGSQPVehPFIIIGQLASISYFTIILVLFPLASILE 344
Cdd:COG1290  354 LGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-177 3.79e-79

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 240.73  E-value: 3.79e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:cd00284   22 WWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKK 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 --KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPF 158
Cdd:cd00284  102 prELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPF 181

                        170
                 ....*....|....*....
gi 629679352 159 VIAGLTLVHLTLLHDTGSN 177
Cdd:cd00284  182 IIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-162 2.72e-69

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 214.94  E-value: 2.72e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352    1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYG--SY 78
Cdd:pfam00033  13 WYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   79 LNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPF 158
Cdd:pfam00033  93 PRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPF 172


                  ....
gi 629679352  159 VIAG 162
Cdd:pfam00033 173 ILAI 176
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 210-296 3.39e-13

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 66.74  E-value: 3.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  210 LAALALFAPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHT-SKLRSMTF 288
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFR 125


                  ....*...
gi 629679352  289 RPISQILF 296
Cdd:TIGR01156 126 RPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-350 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 690.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00119  31 WWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLY 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00119 111 KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLI 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00119 191 AGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIK 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00119 271 PEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFII 350

                        330       340       350
                 ....*....|....*....|....*....|
gi 629679352 321 IGQLASISYFTIILVLFPLASILENKMLKL 350
Cdd:MTH00119 351 IGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00100
cytochrome b; Provisional
 1-349 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 642.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00100  30 WWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLF 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00100 110 LETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFII 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00100 190 TALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIK 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00100 270 PEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFII 349

                        330       340
                 ....*....|....*....|....*....
gi 629679352 321 IGQLASISYFTIILVLFPLASILENKMLK 349
Cdd:MTH00100 350 IGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00131
cytochrome b; Provisional
 1-349 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 641.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00131  30 WWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLY 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00131 110 KETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVI 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00131 190 AAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIK 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00131 270 PEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFII 349

                        330       340
                 ....*....|....*....|....*....
gi 629679352 321 IGQLASISYFTIILVLFPLASILENKMLK 349
Cdd:MTH00131 350 IGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00074
cytochrome b; Provisional
 1-350 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 615.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00074  31 LWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMY 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00074 111 KETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLI 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00074 191 AGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQ 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00074 271 PEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIE 350

                        330       340       350
                 ....*....|....*....|....*....|
gi 629679352 321 IGQLASISYFTIILVLFPLASILENKMLKL 350
Cdd:MTH00074 351 IGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-339 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 589.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00191  27 WWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLN 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00191 107 KETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLI 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00191 187 AALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIK 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00191 267 PEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFIL 346

                        330
                 ....*....|....*....
gi 629679352 321 IGQLASISYFTIILVLFPL 339
Cdd:MTH00191 347 LGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 1-348 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 573.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00034  30 WWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVN 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00034 110 IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFII 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00034 190 AALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQ 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00034 270 PEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFIL 349

                        330       340
                 ....*....|....*....|....*...
gi 629679352 321 IGQLASISYFTIILVLFPLASILENKML 348
Cdd:MTH00034 350 LGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00156
cytochrome b; Provisional
 1-337 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 572.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00156  20 WWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00156 100 KHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFII 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00156 180 LAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQ 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00156 260 PEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYIL 339

                        330
                 ....*....|....*..
gi 629679352 321 IGQLASISYFTIILVLF 337
Cdd:MTH00156 340 TGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-348 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 569.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00145  31 WWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLM 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00145 111 QHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVI 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00145 191 LGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQ 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00145 271 PEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYET 350

                        330       340
                 ....*....|....*....|....*...
gi 629679352 321 IGQLASISYFTIILVLfPLASILENKML 348
Cdd:MTH00145 351 IGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-349 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 530.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00016  31 WWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00016 111 METWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVI 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00016 191 AALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIK 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00016 271 PEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEF 350

                        330       340
                 ....*....|....*....|....*....
gi 629679352 321 IGQLASISYFTiILVLFPLASILENKMLK 349
Cdd:MTH00016 351 LGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00022
cytochrome b; Validated
 2-349 8.05e-173

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 485.36  E-value: 8.05e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   2 WNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLNK 81
Cdd:MTH00022  30 WNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKF 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  82 ETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIA 161
Cdd:MTH00022 110 HVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILA 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 162 GLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIKP 241
Cdd:MTH00022 190 FLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQP 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 242 EWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFIII 321
Cdd:MTH00022 270 EWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILI 349

                        330       340
                 ....*....|....*....|....*...
gi 629679352 322 GQLASISYFTIILVLFPLASILENKMLK 349
Cdd:MTH00022 350 GQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 2-350 1.13e-171

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 482.28  E-value: 1.13e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   2 WNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLNK 81
Cdd:MTH00053  32 WNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKI 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  82 ETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVIA 161
Cdd:MTH00053 112 IVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILA 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 162 GLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIKP 241
Cdd:MTH00053 192 GLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKP 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 242 EWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFIII 321
Cdd:MTH00053 272 EWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILI 351

                        330       340
                 ....*....|....*....|....*....
gi 629679352 322 GQLASISYFTIILVLFPLASILENKMLKL 350
Cdd:MTH00053 352 GQIASIFYFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00224
cytochrome b; Provisional
 1-349 1.28e-158

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 449.37  E-value: 1.28e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00224  31 WWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00224 111 SETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAI 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00224 191 MGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIK 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00224 271 PEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEG 350

                        330       340
                 ....*....|....*....|....*....
gi 629679352 321 IGQLASISYFTiILVLFPLASILENKMLK 349
Cdd:MTH00224 351 IGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-345 6.53e-131

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 379.28  E-value: 6.53e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00033  27 WWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSR 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00033 107 VLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVL 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFA--PNLLGDPENFTPANPLATPPH 238
Cdd:MTH00033 187 VGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVH 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 239 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTWVGSQPV-EHP 317
Cdd:MTH00033 267 IQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADP 346

                        330       340
                 ....*....|....*....|....*...
gi 629679352 318 FIIIGQLASISYFTIILVLFPLASILEN 345
Cdd:MTH00033 347 YVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-344 1.85e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 375.67  E-value: 1.85e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSY-- 78
Cdd:COG1290   39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  79 ---LNketWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-F 154
Cdd:COG1290  119 preLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvL 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 155 LLPFVIAGLTLVHLTLLHDTGSNNPLGI----PSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNllGDPENFTPA 230
Cdd:COG1290  196 LLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPA 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 231 NPLATPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTW 308
Cdd:COG1290  274 NPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTI 353

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 629679352 309 VGSQPVehPFIIIGQLASISYFTIILVLFPLASILE 344
Cdd:COG1290  354 LGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-337 2.46e-110

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 325.74  E-value: 2.46e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00086  19 WWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRL 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00086  99 KKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGL 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIpLAALALFAPNLLGDPENFTPANPLATPPHIK 240
Cdd:MTH00086 179 LVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHIV 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 241 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSklrSMTFRPISQILFWALVANLLILTWVGSQPVEHPFII 320
Cdd:MTH00086 258 PEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLF 334

                        330
                 ....*....|....*..
gi 629679352 321 IGQLASISYFTIILVLF 337
Cdd:MTH00086 335 LSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-337 9.65e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 255.29  E-value: 9.65e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:MTH00046  21 YWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSK 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPFVI 160
Cdd:MTH00046 101 KGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 161 AGLTLVHLTLLHDTGSNNPLGIPSD-CDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHI 239
Cdd:MTH00046 181 LGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSI 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 240 KPEWYFLFAYAILRSIPNKLGGvLALAASVLVLFLIPFLHTSKLRSMtfrpISQILFWALVANLLILTWVGSQPVEHPFI 319
Cdd:MTH00046 261 KPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYL 335

                        330
                 ....*....|....*...
gi 629679352 320 IIGQLASISyftIILVLF 337
Cdd:MTH00046 336 LISQLFSVL---MVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-177 3.79e-79

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 240.73  E-value: 3.79e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLN 80
Cdd:cd00284   22 WWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKK 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  81 --KETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPF 158
Cdd:cd00284  102 prELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPF 181

                        170
                 ....*....|....*....
gi 629679352 159 VIAGLTLVHLTLLHDTGSN 177
Cdd:cd00284  182 IIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-162 2.72e-69

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 214.94  E-value: 2.72e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352    1 WWNFGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYG--SY 78
Cdd:pfam00033  13 WYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   79 LNKETWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIHFLLPF 158
Cdd:pfam00033  93 PRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPF 172


                  ....
gi 629679352  159 VIAG 162
Cdd:pfam00033 173 ILAI 176
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 178-325 1.34e-58

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 185.93  E-value: 1.34e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 178 NPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALALFAPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPN 257
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 629679352 258 KLGGVLALAASVLVLFLIPFLHTSKLRSmTFRPISQILFWALVANLLILTWVGSQPVEHPFIIIGQLA 325
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
229-329 4.86e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 159.95  E-value: 4.86e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  229 PANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHTSKLRSMTFRPISQILFWALVANLLILTW 308
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 629679352  309 VGSQPVEHPFIIIGQLASISY 329
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
59-224 1.75e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 137.37  E-value: 1.75e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   59 SFFFICIYFHIGRGLYYGSYLNKE--TWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLW 136
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  137 GGFSVDNPTLTRFFAIHF-LLPFVIAGLTLVHLTLLHDTGSNNPLGIPSDCDKIPFHPYYTVKDILGFVLMFIPLAALAL 215
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 629679352  216 FAPNLLGDP 224
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 4-162 2.23e-32

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 120.59  E-value: 2.23e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   4 FGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLNKE- 82
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  83 -TWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-FLLPFVI 160
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203


                 ..
gi 629679352 161 AG 162
Cdd:PRK03735 204 AV 205
petB CHL00070
cytochrome b6
 4-161 3.15e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 106.73  E-value: 3.15e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352   4 FGSLLGICLITQIVTGLLLAMHYTADTSLAFESVSHMCRNVQYGWLIRNLHANGASFFFICIYFHIGRGLYYGSYLNKE- 82
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  83 -TWNIGVVLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAIH-FLLPFVI 160
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195


                 .
gi 629679352 161 A 161
Cdd:CHL00070 196 A 196
petD CHL00058
cytochrome b6/f complex subunit IV
 213-296 1.86e-14

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 70.03  E-value: 1.86e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 213 LALFAPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFL-HTSKLRSMTFRPI 291
Cdd:CHL00058  54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPV 128


                 ....*
gi 629679352 292 SQILF 296
Cdd:CHL00058 129 ATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 200-296 1.26e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 67.90  E-value: 1.26e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352 200 ILGFVLMFIplaALALFAPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLH 279
Cdd:COG5679   45 ILGTIALCI---GLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116

                         90
                 ....*....|....*...
gi 629679352 280 T-SKLRSMTFRPISQILF 296
Cdd:COG5679  117 NvNKFQNPFRRPVATAVF 134
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 210-296 3.39e-13

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 66.74  E-value: 3.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 629679352  210 LAALALFAPNLLGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLIPFLHT-SKLRSMTF 288
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFR 125


                  ....*...
gi 629679352  289 RPISQILF 296
Cdd:TIGR01156 126 RPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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