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Conserved domains on  [gi|62702179|gb|AAX93105|]
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unknown [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00191 super family cl33173
60S ribosomal protein L23a; Provisional
 40-127 4.11e-30

60S ribosomal protein L23a; Provisional


The actual alignment was detected with superfamily member PTZ00191:

Pssm-ID: 185507 [Multi-domain]  Cd Length: 145  Bit Score: 105.55  E-value: 4.11e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62702179   40 IRMSPTFQRPKTLRLWRPPRYPRKTTPRRNKLDHYAIIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDI 119
Cdd:PTZ00191  29 VRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEKLYDV 108


                 ....*...
gi 62702179  120 DGAKVNTL 127
Cdd:PTZ00191 109 KVVKVNTL 116
 
Name Accession Description Interval E-value
PTZ00191 PTZ00191
60S ribosomal protein L23a; Provisional
 40-127 4.11e-30

60S ribosomal protein L23a; Provisional


Pssm-ID: 185507 [Multi-domain]  Cd Length: 145  Bit Score: 105.55  E-value: 4.11e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62702179   40 IRMSPTFQRPKTLRLWRPPRYPRKTTPRRNKLDHYAIIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDI 119
Cdd:PTZ00191  29 VRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEKLYDV 108


                 ....*...
gi 62702179  120 DGAKVNTL 127
Cdd:PTZ00191 109 KVVKVNTL 116
Ribosomal_L23 pfam00276
Ribosomal protein L23;
76-127 9.93e-11

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 53.98  E-value: 9.93e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 62702179    76 IIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTL 127
Cdd:pfam00276   2 VIIKPVITEKSTALMEKNNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTL 53
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
 80-127 6.86e-10

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 51.99  E-value: 6.86e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 62702179  80 PLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTL 127
Cdd:COG0089   3 PVITEKSTALAEKNNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTL 50
 
Name Accession Description Interval E-value
PTZ00191 PTZ00191
60S ribosomal protein L23a; Provisional
 40-127 4.11e-30

60S ribosomal protein L23a; Provisional


Pssm-ID: 185507 [Multi-domain]  Cd Length: 145  Bit Score: 105.55  E-value: 4.11e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62702179   40 IRMSPTFQRPKTLRLWRPPRYPRKTTPRRNKLDHYAIIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDI 119
Cdd:PTZ00191  29 VRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEKLYDV 108


                 ....*...
gi 62702179  120 DGAKVNTL 127
Cdd:PTZ00191 109 KVVKVNTL 116
PRK14548 PRK14548
50S ribosomal protein L23P; Provisional
 74-128 1.25e-14

50S ribosomal protein L23P; Provisional


Pssm-ID: 237750  Cd Length: 84  Bit Score: 64.11  E-value: 1.25e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 62702179   74 YAIIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTLM 128
Cdd:PRK14548   2 YSIIKYPLVTEKAMNLIEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLI 56
rplW PRK05738
50S ribosomal protein L23; Reviewed
 74-127 2.71e-11

50S ribosomal protein L23; Reviewed


Pssm-ID: 235586  Cd Length: 92  Bit Score: 55.48  E-value: 2.71e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 62702179   74 YAIIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTL 127
Cdd:PRK05738   1 YDVIKRPVITEKSTLLMEKQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTL 54
Ribosomal_L23 pfam00276
Ribosomal protein L23;
76-127 9.93e-11

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 53.98  E-value: 9.93e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 62702179    76 IIKFPLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTL 127
Cdd:pfam00276   2 VIIKPVITEKSTALMEKNNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTL 53
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
 80-127 6.86e-10

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 51.99  E-value: 6.86e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 62702179  80 PLTTEFAMKKIKDNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTL 127
Cdd:COG0089   3 PVITEKSTALAEKNNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTL 50
Ribosomal_L23eN pfam03939
Ribosomal protein L23, N-terminal domain; The N-terminal domain appears to be specific to the ...
 40-66 2.29e-07

Ribosomal protein L23, N-terminal domain; The N-terminal domain appears to be specific to the eukaryotic ribosomal proteins L25, L23, and L23a.


Pssm-ID: 461099 [Multi-domain]  Cd Length: 50  Bit Score: 44.47  E-value: 2.29e-07
                          10        20
                  ....*....|....*....|....*..
gi 62702179    40 IRMSPTFQRPKTLRLWRPPRYPRKTTP 66
Cdd:pfam03939  24 IRTSVTFHRPKTLRLARQPKYPRKSVP 50
rplW PRK12280
50S ribosomal protein L23; Reviewed
 71-127 2.69e-04

50S ribosomal protein L23; Reviewed


Pssm-ID: 237035 [Multi-domain]  Cd Length: 158  Bit Score: 38.59  E-value: 2.69e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 62702179   71 LDHYAIIKFPLTTE---FAMKKikdnNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNTL 127
Cdd:PRK12280   1 MNINEVIKKPILTEksySLMSK----NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIF 56
rpl23 CHL00030
ribosomal protein L23
 76-126 5.80e-03

ribosomal protein L23


Pssm-ID: 176971  Cd Length: 93  Bit Score: 33.74  E-value: 5.80e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 62702179   76 IIKFPLTTEFAMKKIKdNNTLVFTVDVKANKHQIKQAVKKLCDIDGAKVNT 126
Cdd:CHL00030   3 GIKYPVFTDKSIRLLE-KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNS 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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