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Conserved domains on  [gi|62362428|gb|AAX81585|]
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cytochrome b, partial (mitochondrion) [Palaeopropithecus sp. KPK-2005]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-161 1.18e-49

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 163.66  E-value: 1.18e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00100  11 MKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMF 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00100  91 FICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 170


                 .
gi 62362428  161 D 161
Cdd:MTH00100 171 D 171
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-161 1.18e-49

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 163.66  E-value: 1.18e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00100  11 MKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMF 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00100  91 FICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 170


                 .
gi 62362428  161 D 161
Cdd:MTH00100 171 D 171
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-161 1.22e-26

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 99.36  E-value: 1.22e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:cd00284   3 LIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMF 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428  81 *****************************************--***********ATVITNLLSAIPYIGTNLVEWIWGSF 158
Cdd:cd00284  83 FLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMgyVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGF 162


                ...
gi 62362428 159 SVD 161
Cdd:cd00284 163 SVD 165
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
8-161 4.83e-25

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 94.76  E-value: 4.83e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428     8 FIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW******************** 87
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62362428    88 **************************************--*******ATVITNLLSAIPYIGTNLVEWIWGSFSVD 161
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLpwGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVD 156
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
13-67 1.15e-15

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 72.90  E-value: 1.15e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 62362428  13 TPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW 67
Cdd:COG1290  32 FPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGW 86
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-161 1.18e-49

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 163.66  E-value: 1.18e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00100  11 MKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMF 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00100  91 FICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 170


                 .
gi 62362428  161 D 161
Cdd:MTH00100 171 D 171
CYTB MTH00074
cytochrome b; Provisional
 1-161 2.09e-42

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 144.82  E-value: 2.09e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00074  12 LKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00074  92 FICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSV 171


                 .
gi 62362428  161 D 161
Cdd:MTH00074 172 D 172
CYTB MTH00131
cytochrome b; Provisional
 1-161 9.91e-41

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 140.17  E-value: 9.91e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00131  11 LKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFF 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00131  91 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSV 170


                 .
gi 62362428  161 D 161
Cdd:MTH00131 171 D 171
CYTB MTH00119
cytochrome b; Provisional
 1-161 4.50e-40

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 138.50  E-value: 4.50e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00119  12 LKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00119  92 FICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSV 171


                 .
gi 62362428  161 D 161
Cdd:MTH00119 172 D 172
CYTB MTH00034
cytochrome b; Validated
 1-161 3.26e-38

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 133.68  E-value: 3.26e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00034  11 FKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLF 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00034  91 FICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSV 170


                 .
gi 62362428  161 D 161
Cdd:MTH00034 171 D 171
CYTB MTH00156
cytochrome b; Provisional
 1-161 3.96e-38

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 132.98  E-value: 3.96e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160


                 .
gi 62362428  161 D 161
Cdd:MTH00156 161 D 161
CYTB MTH00191
cytochrome b; Provisional
 1-161 1.01e-37

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 131.96  E-value: 1.01e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00191   8 LKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFF 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00191  88 FICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSV 167


                 .
gi 62362428  161 D 161
Cdd:MTH00191 168 D 168
CYTB MTH00016
cytochrome b; Validated
 1-161 6.85e-35

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 124.79  E-value: 6.85e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00016  12 IKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00016  92 FICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSV 171


                 .
gi 62362428  161 D 161
Cdd:MTH00016 172 D 172
CYTB MTH00145
cytochrome b; Provisional
 2-161 1.10e-31

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 116.54  E-value: 1.10e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    2 KIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************** 81
Cdd:MTH00145  13 KVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFF 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   82 ***************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSVD 161
Cdd:MTH00145  93 ICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVG 172
CYTB MTH00224
cytochrome b; Provisional
 1-161 5.73e-31

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 114.63  E-value: 5.73e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00224  12 IKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00224  92 FLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAV 171


                 .
gi 62362428  161 D 161
Cdd:MTH00224 172 D 172
CYTB MTH00022
cytochrome b; Validated
 1-160 6.79e-30

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 111.72  E-value: 6.79e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:MTH00022  10 LSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLF 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   81 ****************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00022  90 FLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSV 169
CYTB MTH00053
cytochrome b; Provisional
 3-160 1.29e-27

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 105.56  E-value: 1.29e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    3 IMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW*************** 82
Cdd:MTH00053  14 LVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFL 93

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62362428   83 **************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00053  94 CVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSV 171
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-161 1.22e-26

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 99.36  E-value: 1.22e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428   1 MKIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************* 80
Cdd:cd00284   3 LIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMF 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428  81 *****************************************--***********ATVITNLLSAIPYIGTNLVEWIWGSF 158
Cdd:cd00284  83 FLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMgyVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGF 162


                ...
gi 62362428 159 SVD 161
Cdd:cd00284 163 SVD 165
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
8-161 4.83e-25

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 94.76  E-value: 4.83e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428     8 FIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW******************** 87
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 62362428    88 **************************************--*******ATVITNLLSAIPYIGTNLVEWIWGSFSVD 161
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLpwGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVD 156
CYTB MTH00033
cytochrome b; Provisional
 6-160 2.02e-23

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 94.23  E-value: 2.02e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    6 SSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW****************** 85
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62362428   86 ***********************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSV 167
CYTB MTH00086
cytochrome b; Provisional
 2-160 5.04e-16

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 73.44  E-value: 5.04e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62362428    2 KIMNSSFIGLLTPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW************** 81
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62362428   82 ***************************************************ATVITNLLSAIPYIGTNLVEWIWGSFSV 160
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGV 159
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
13-67 1.15e-15

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 72.90  E-value: 1.15e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 62362428  13 TPSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW 67
Cdd:COG1290  32 FPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGW 86
petB CHL00070
cytochrome b6
 14-67 3.10e-04

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 39.32  E-value: 3.10e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 62362428   14 PSNISSWWNFGFLLGACLALQIVTGLFLAMHYTVDTTTAFSSVTHICRDVNYGW 67
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGW 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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