|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
2.50e-153 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 434.27 E-value: 2.50e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 1 MKPIILMFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTAN 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 81 SGQWGITNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNPNIILLIAIL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 241 TLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYSTSLTMFPTLNNMKMKWQFQQT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 62287107 321 KQIFLLSPLVILATLTLPLSPALLTLN 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-281 |
6.07e-18 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 82.75 E-value: 6.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 23 SSHWLLMWVGLEINMLAIIP-ILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANSGQWGITNMHNQLT------- 94
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 95 ----SLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLL-TWQKLAPISILLQIFPSMNPNIILLIAILSILV----- 164
Cdd:pfam00361 81 llllFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIismll 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAILM----YWPSLTMLNLLIYLMLTITLFSVLNINT-----NTTTLTLSNTWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSVIyrrvhTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 62287107 236 KTPMITLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATI 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-298 |
1.91e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 82.86 E-value: 1.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 9 IMLTIFMGTMLTMISSHWLLMWVGLEINMLAI-IPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANSGQWGIT 87
Cdd:COG1007 107 LLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLA 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 88 NMHNQLTS------LVTMAALMM------KLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNPNIIL 155
Cdd:COG1007 187 GIAAALAAgganspLLLLGLVLVlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAA 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 156 LIAILSIL-------VGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSL----TMLNLLIYLMLTITLFSVLNINTN 224
Cdd:COG1007 267 DWQLLLAVlavlsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLLSR 346
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62287107 225 TTTLTLSN-----TWNKTPMITLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIY 298
Cdd:COG1007 347 KGGEAEEIedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
9-297 |
3.71e-15 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 76.14 E-value: 3.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 9 IMLTIFMGTMLTMISSHWLLMWVGLEINMLAI-IPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANSGQWGIT 87
Cdd:TIGR01770 107 LLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 88 NMHNQLTS------------LVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSM------ 149
Cdd:TIGR01770 187 DLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfse 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 150 -NPNIILLIAILSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLmLTITLFSVLNINTNTTTL 228
Cdd:TIGR01770 267 aWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYI-FIYALMSLGAFGVLSLLR 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 229 TLSNTWNKT-----------PMITLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLI 297
Cdd:TIGR01770 346 SYKDEWIEYisdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
2.50e-153 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 434.27 E-value: 2.50e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 1 MKPIILMFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTAN 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 81 SGQWGITNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNPNIILLIAIL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTWNKTPMI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 241 TLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYSTSLTMFPTLNNMKMKWQFQQT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 62287107 321 KQIFLLSPLVILATLTLPLSPALLTLN 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
6.89e-110 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 324.07 E-value: 6.89e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 1 MKPIILMFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTAN 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 81 SGQWGITNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSmNPNIILLIAIL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTWNKTPMI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 241 TLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYSTSLTMFPTLNNMKMKWQFQQT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*.
gi 62287107 321 KQIFLLSPLVILATLTLPLSPALLTL 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILAL 345
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
2.15e-105 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 312.53 E-value: 2.15e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 1 MKPIILMFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTAN 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 81 SGQWGITNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNPNIILLIAIL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTWNKTPMI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 241 TLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYSTSLTMFPTLNNMKMKWQFQQT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*.
gi 62287107 321 KQIfLLSPLVILATLTLPLSPALLTL 346
Cdd:MTH00112 321 KNT-LTATLTTLSTLLLPLSPMILTI 345
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.93e-100 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 299.91 E-value: 1.93e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 1 MKPIILMFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTAN 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 81 SGQWGITNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNPNIILLIAIL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTWNKTPMI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 241 TLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYSTSLTMFPTLNNMKMKWQFqQT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319
|
330 340
....*....|....*....|....*.
gi 62287107 321 KQIFLLSPLVILATLTLPLSPALLTL 346
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
4.04e-74 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 232.55 E-value: 4.04e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 1 MKPIILMFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTAN 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 81 SGQWGITNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNPNIILLIAIL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTWNKTPMI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 241 TLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYSTSLTMFPTLNNMKMKWQFQQT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*.
gi 62287107 321 KqIFLLSPLVILATLTLPLSPALLTL 346
Cdd:MTH00200 321 S-NLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-339 |
2.96e-71 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 225.58 E-value: 2.96e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 1 MKPIILMFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTAN 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 81 SGQWGITNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNPNIILLIAIL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTWNKTPMI 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 241 TLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYSTSLTMFPTLNNMKMKWQFQQT 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330 340
....*....|....*....|....
gi 62287107 321 KQIF-----LLSPLVILATLTLPL 339
Cdd:MTH00041 321 ITVYgvilsILSSISILGLLLIPL 344
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-339 |
1.85e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 155.37 E-value: 1.85e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 1 MKPIILMFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTAN 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 81 SgqwgitNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIfpsMNPNIILLIAIL 160
Cdd:MTH00160 82 L------MLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 161 SILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTWNKTPMI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 241 TLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYSTSLTMFPTLNNMKMKWQFQQT 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312
|
330
....*....|....*....
gi 62287107 321 KQIFLLSPLVILATLTLPL 339
Cdd:MTH00160 313 LILNFLSFISLFGLILSSL 331
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
6-315 |
2.33e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 152.35 E-value: 2.33e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 6 LMFIMLtIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANSGQWG 85
Cdd:MTH00144 7 LLFLFL-MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 86 ItnmhnqltSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNPNIILLIA-ILSILV 164
Cdd:MTH00144 86 S--------MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsVLSALV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTwNKTPMITLTI 244
Cdd:MTH00144 158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSI 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 62287107 245 LISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYSTSLTMFPTLNNMKMKW 315
Cdd:MTH00144 237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
6-312 |
3.74e-39 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 141.46 E-value: 3.74e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 6 LMFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMfsivinTANSGQWG 85
Cdd:MTH00011 8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLL------LGMTMMWS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 86 ITNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNPNIILLIAILSILVG 165
Cdd:MTH00011 82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 166 GWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTWNKTPMITLTIL 245
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62287107 246 ISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYStSLTMFPTLNNMK 312
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLK 307
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
7-332 |
7.10e-33 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 124.40 E-value: 7.10e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 7 MFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANsgqwgi 86
Cdd:MTH00197 1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 87 tNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILlqIFPSMNPNIILLIAILSILVGG 166
Cdd:MTH00197 75 -LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 167 WGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLMLTITLFSVLNINTNTTTLTLSNTWNKTPMITLTILI 246
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 247 SLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIYSTSLTMFPTLNNMKMKWQFQQTKQIFLL 326
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLM 311
|
....*.
gi 62287107 327 SPLVIL 332
Cdd:MTH00197 312 MMLPLL 317
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
9-218 |
5.86e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 90.46 E-value: 5.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 9 IMLTIFMGTMLTMISSHWLLMWVGLEINMLAI-IPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANSGQWGIT 87
Cdd:MTH00199 102 LILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQ 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 88 NMHNQLTS-----LVTMAaLMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNpnIILLIAILSI 162
Cdd:MTH00199 182 GINSILTGdvgkiLITIS-LLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62287107 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMM------------AILMYwpsltmlnLLIYLMLTITLFSV 218
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILfgvaigsfesiqASLIY--------MIIYVIMSICSFSI 318
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-281 |
6.07e-18 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 82.75 E-value: 6.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 23 SSHWLLMWVGLEINMLAIIP-ILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANSGQWGITNMHNQLT------- 94
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTgglnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 95 ----SLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLL-TWQKLAPISILLQIFPSMNPNIILLIAILSILV----- 164
Cdd:pfam00361 81 llllFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIismll 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 165 GGWGGLNQTQLRKILAYSSIAHMGWMMAILM----YWPSLTMLNLLIYLMLTITLFSVLNINT-----NTTTLTLSNTWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSVIyrrvhTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 62287107 236 KTPMITLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATI 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
9-298 |
1.91e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 82.86 E-value: 1.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 9 IMLTIFMGTMLTMISSHWLLMWVGLEINMLAI-IPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANSGQWGIT 87
Cdd:COG1007 107 LLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLA 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 88 NMHNQLTS------LVTMAALMM------KLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNPNIIL 155
Cdd:COG1007 187 GIAAALAAgganspLLLLGLVLVlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLAA 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 156 LIAILSIL-------VGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSL----TMLNLLIYLMLTITLFSVLNINTN 224
Cdd:COG1007 267 DWQLLLAVlavlsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLLSR 346
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62287107 225 TTTLTLSN-----TWNKTPMITLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLIY 298
Cdd:COG1007 347 KGGEAEEIedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-297 |
3.22e-16 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 78.53 E-value: 3.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 13 IFMGTMLTMISSHWLLMWVGLEINMLAI-IPILMKKISPRSTEAATKYFLTQATASMLLMFSIV-------------INT 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 79 ANSGQWGITNMHNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPsmNPNIILLIA 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 159 ILSILVGGWGGLNQTQLRKILAYSSIAHMGWMM------------AILMYwpsltmlnLLIYLMLTITLFSVLNINTNTT 226
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLwgieigsfesiqASLVY--------LFIYIIMSICVFSIILALNVYK 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 62287107 227 TLTLSN--TWNKTPMITLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLI 297
Cdd:MTH00196 232 NLIIEFsgLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
9-297 |
3.71e-15 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 76.14 E-value: 3.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 9 IMLTIFMGTMLTMISSHWLLMWVGLEINMLAI-IPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANSGQWGIT 87
Cdd:TIGR01770 107 LLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 88 NMHNQLTS------------LVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSM------ 149
Cdd:TIGR01770 187 DLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfse 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 150 -NPNIILLIAILSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYLmLTITLFSVLNINTNTTTL 228
Cdd:TIGR01770 267 aWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYI-FIYALMSLGAFGVLSLLR 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 229 TLSNTWNKT-----------PMITLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLI 297
Cdd:TIGR01770 346 SYKDEWIEYisdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
8-218 |
8.93e-15 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 74.86 E-value: 8.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 8 FIMLTIFM-GTMLTMISS-HWLLMWVGLEINMLAI-IPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANSGQW 84
Cdd:PRK05777 105 FYLLVLFAlLGMMVMVSAnDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSL 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 85 GITNMHNQLTSLVT------------MAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQI----FPS 148
Cdd:PRK05777 185 SFAGIAKALADGSGnsllllfglvflLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvaFGG 264
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 62287107 149 MNP---NIILLIAILSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSL----TMLNLLIYLMLTITLFSV 218
Cdd:PRK05777 265 LSEdwqQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFGV 341
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
3.13e-10 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 54.96 E-value: 3.13e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 62287107 291 YFYMRLIYSTSLTMFPTLNNMKMKWQFQQTKQIFLLSPLVILATLTLPLSP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
9-191 |
8.66e-10 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 59.87 E-value: 8.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 9 IMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRST---------EAATKYFLTQATASMLLMFSIVIN-- 77
Cdd:MTH00198 193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYfg 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 78 -TANSGQWGI--------TNM---HNQLTSLVTMAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQI 145
Cdd:MTH00198 273 fTGNEGMLGTilsatletTNIelrQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL 352
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 62287107 146 FpsMNPNIILLIAILSILVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:MTH00198 353 V--ITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
8-301 |
4.28e-09 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 57.46 E-value: 4.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 8 FIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKKISPRSTEAATKYFLTQATASMLLMFSIVINTANSGQWGIT 87
Cdd:COG0651 111 PLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMA 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 88 NMHNQL----TSLVTMAALM------MKLGMTPFHFWVPEV-----TQGISLMSGMLLltwqKLAPISIL---LQIFPSM 149
Cdd:COG0651 191 DLAARLaeldPGLLLAAFALllvgfgIKAALFPLHFWLPDAypaapSPVSALLSGLLT----KVGVYAILrvlTLLFGAD 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 150 NPNIILLIAILS----ILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILMYWPSLTMLNLLIYL----MLTITLF----S 217
Cdd:COG0651 267 PALFLGTLLLVLglltMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFlaagA 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 218 VLNINTNTTTLTLSNTWNKTPMITLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFYMRLI 297
Cdd:COG0651 347 IERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIF 426
|
....
gi 62287107 298 YSTS 301
Cdd:COG0651 427 GRAQ 430
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
4-191 |
5.31e-05 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 44.93 E-value: 5.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 4 IILMFIMLTIFMGTMLTMISSHWLLMWVGLEINMLAIIPILMKkisPRSTEAATKYFLTQATASMLLMFSIV-INTANSG 82
Cdd:TIGR01972 109 YALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG---PNRIYAAMKFFLYTLAGSLLMLLAILgLYFLGGG 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 83 QWGITNMHNQLTSLVT--------MAALMMKLGMTPFHFWVPEV-----TQGISLMSGMLLltwqKLAP---ISILLQIF 146
Cdd:TIGR01972 186 TFDLLELLNLPLPFGVqtwlflafFIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTygfLRFNLPLF 261
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 62287107 147 P-SMNPNIILLIAILSILV--GGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:TIGR01972 262 PdASLYFAPVLAALGVIAIiyGALIALAQTDIKRLIAYSSISHMGFVL 309
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-297 |
3.07e-04 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 42.35 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 9 IMLTIFMGTMLTMISSHWLLMWVGLEinMLAIIPILMK---KISPRSTEAATKYFLTQATASMLLMFSIVINTANSGqwG 85
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSG--G 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 86 ITNMHNQLTSLVT-------------MAALMMKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLA----PISILLQIFPS 148
Cdd:PRK02504 191 STQLSAIALALITspslglalalvfvIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPS 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 149 MNPN---IILLIAILSILVGGWGGLNQTQLRKILAYSSIAHMGWMMAILM------YwpSLTMLNLLIYLMLT------I 213
Cdd:PRK02504 271 FDEQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVagteagY--ASMVFYLLAYLFMNlgafacV 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 214 TLFSVLNINTNTTTLTLSntWNKTPMITLTILISLLSLGGLPPLTGFLPKWTIIQELTKNSNIMLATIMAIMALLNLYFY 293
Cdd:PRK02504 349 ILFSLRTGTDQISDYAGL--YQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYY 426
|
....
gi 62287107 294 MRLI 297
Cdd:PRK02504 427 IRVI 430
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
49-192 |
3.17e-04 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 42.38 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 49 SPRSTEAATKYFLTQATASMLLMFSIVINTANSGQW--GITNMHNQLTSLVT--------MAALMMKLGMTPFHFWVPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAqlllflafFIAFAVKVPMFPFHTWLPDA 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 119 -----TQGISLMSGMLL----------------LTWQKLAPISILLQIFpsmnpniilliailSILVGGWGGLNQTQLRK 177
Cdd:COG1008 236 hveapTAGSVLLAGVLLkmggygllrfalplfpEASAYFAPLLAALGVI--------------GIIYGALVALAQTDLKR 301
|
170
....*....|....*
gi 62287107 178 ILAYSSIAHMGWMMA 192
Cdd:COG1008 302 LIAYSSVSHMGFVLL 316
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
8-192 |
9.80e-04 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 41.18 E-value: 9.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 8 FIMLTIFMGTMLTMI-SSHWLLMWVGLEINMLAIIpILMKKISPRSTEAATKYFLTQATASMLLMFSIVINtanSGQWGI 86
Cdd:PRK12650 113 YLLMTAFMAAMLLLVlADDVVVLFVAWELVSLASF-FLIARSGSGGEAGSIRTLILTFFGGLTLLAAVAIA---ATQTGT 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 87 TNMHNQLTS---------------LVTMAALMmKLGMTPFHFWVPEVTQGISLMSGMLLLTWQKLAPISILLQIFPSMNP 151
Cdd:PRK12650 189 TSLSGILHSdvwaekpglttvvavLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHD 267
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 62287107 152 NII-----LLIAILSILVGGWGGLNQTQLRKILAYSSIAHMGWMMA 192
Cdd:PRK12650 268 VAVwnwllIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVA 313
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
30-191 |
1.07e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 40.85 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 30 WVGLEINMLAIIPILMKKI-SPRSTEAATKYFLTQATASMLLMFSIVINTansGQWGITNM---------HNQLTSLVTM 99
Cdd:PRK08376 147 FVFLEIMSIASYALVAFRNdTWEAIEAGIKYMFVGSLASSMVLLGIALLY---GQYGTLNMaylavkmseNPTVVAKIAL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62287107 100 A----ALMMKLGMTPFHFWVPEV-TQGISLMSGMLLLTWQK--LAPISILLQIF-PSMNPNI----ILLIAILSILVGGW 167
Cdd:PRK08376 224 AlfiaGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQAglYALARVLFSIYgPAINLATvgwvIIILGCLTMFVGVA 303
|
170 180
....*....|....*....|....
gi 62287107 168 GGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK08376 304 MAVVQKDVKRLLAYHSVSQIGYML 327
|
|
| |
