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Conserved domains on  [gi|62134|emb|CAA29538|]
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unnamed protein product [Tobacco rattle virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MP super family cl03100
Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP ...
 11-191 9.35e-61

Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP is necessary for the initial cell-to-cell movement during the early stages of a viral infection. This movement is active, and it is known that the MP interacts with the plasmodesmata and possesses the ability to bind to RNA to achieve its role. This family also includes consists of virus movement proteins from the caulimovirus family. It has been suggested in cauliflower mosaic virus that these proteins mediated viral movement by modifying plasmodesmata and forming tubules in the channel that can accommodate the virus particles and references therein. The family contains a conserved DXR motif that is probably functionally important.


The actual alignment was detected with superfamily member pfam01107:

Pssm-ID: 279452  Cd Length: 191  Bit Score: 189.92  E-value: 9.35e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62134       11 KKTFEVSKFSNLGAIELFVDGRRKRPKYFHRRRETVLNHV------GGKKSEHKLDVFDQRDY----KMIKSYAFLKIVG 80
Cdd:pfam01107   1 KKEIEETDFIDLTKSEIFYPSMFKPLKKVFIRKNEKLFKVstreiiGDGDSLSELPLIDQEEIkkrlSKRKSYRYVHLGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62134       81 VQLVVTSHLPADTPGFIQIDLLDSRLTekRKKGKTIQRFKARACDNCSVAQYKVEYSISTQE-NVLDVWKVGCISEGVPV 159
Cdd:pfam01107  81 LQVVIKANFPNGIDTPGEIILYDNRLE--RRKEATIQSYKGNLAYGKFKFTVVPNYSISTQDaNLDNSWSVLVNFENVNM 158

                         170       180       190
                  ....*....|....*....|....*....|..
gi 62134      160 CDGTYPFSIEVSLIWVATDSTRRLNVEELNSS 191
Cdd:pfam01107 159 KKGTYPFSIEVGVVYRLTNSHRSLEKKEKNSN 190
 
Name Accession Description Interval E-value
MP pfam01107
Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP ...
 11-191 9.35e-61

Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP is necessary for the initial cell-to-cell movement during the early stages of a viral infection. This movement is active, and it is known that the MP interacts with the plasmodesmata and possesses the ability to bind to RNA to achieve its role. This family also includes consists of virus movement proteins from the caulimovirus family. It has been suggested in cauliflower mosaic virus that these proteins mediated viral movement by modifying plasmodesmata and forming tubules in the channel that can accommodate the virus particles and references therein. The family contains a conserved DXR motif that is probably functionally important.


Pssm-ID: 279452  Cd Length: 191  Bit Score: 189.92  E-value: 9.35e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62134       11 KKTFEVSKFSNLGAIELFVDGRRKRPKYFHRRRETVLNHV------GGKKSEHKLDVFDQRDY----KMIKSYAFLKIVG 80
Cdd:pfam01107   1 KKEIEETDFIDLTKSEIFYPSMFKPLKKVFIRKNEKLFKVstreiiGDGDSLSELPLIDQEEIkkrlSKRKSYRYVHLGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62134       81 VQLVVTSHLPADTPGFIQIDLLDSRLTekRKKGKTIQRFKARACDNCSVAQYKVEYSISTQE-NVLDVWKVGCISEGVPV 159
Cdd:pfam01107  81 LQVVIKANFPNGIDTPGEIILYDNRLE--RRKEATIQSYKGNLAYGKFKFTVVPNYSISTQDaNLDNSWSVLVNFENVNM 158

                         170       180       190
                  ....*....|....*....|....*....|..
gi 62134      160 CDGTYPFSIEVSLIWVATDSTRRLNVEELNSS 191
Cdd:pfam01107 159 KKGTYPFSIEVGVVYRLTNSHRSLEKKEKNSN 190
 
Name Accession Description Interval E-value
MP pfam01107
Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP ...
 11-191 9.35e-61

Viral movement protein (MP); This family includes a variety of movement proteins (MP)s. The MP is necessary for the initial cell-to-cell movement during the early stages of a viral infection. This movement is active, and it is known that the MP interacts with the plasmodesmata and possesses the ability to bind to RNA to achieve its role. This family also includes consists of virus movement proteins from the caulimovirus family. It has been suggested in cauliflower mosaic virus that these proteins mediated viral movement by modifying plasmodesmata and forming tubules in the channel that can accommodate the virus particles and references therein. The family contains a conserved DXR motif that is probably functionally important.


Pssm-ID: 279452  Cd Length: 191  Bit Score: 189.92  E-value: 9.35e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62134       11 KKTFEVSKFSNLGAIELFVDGRRKRPKYFHRRRETVLNHV------GGKKSEHKLDVFDQRDY----KMIKSYAFLKIVG 80
Cdd:pfam01107   1 KKEIEETDFIDLTKSEIFYPSMFKPLKKVFIRKNEKLFKVstreiiGDGDSLSELPLIDQEEIkkrlSKRKSYRYVHLGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62134       81 VQLVVTSHLPADTPGFIQIDLLDSRLTekRKKGKTIQRFKARACDNCSVAQYKVEYSISTQE-NVLDVWKVGCISEGVPV 159
Cdd:pfam01107  81 LQVVIKANFPNGIDTPGEIILYDNRLE--RRKEATIQSYKGNLAYGKFKFTVVPNYSISTQDaNLDNSWSVLVNFENVNM 158

                         170       180       190
                  ....*....|....*....|....*....|..
gi 62134      160 CDGTYPFSIEVSLIWVATDSTRRLNVEELNSS 191
Cdd:pfam01107 159 KKGTYPFSIEVGVVYRLTNSHRSLEKKEKNSN 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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