|
Name |
Accession |
Description |
Interval |
E-value |
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
59-679 |
0e+00 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 1073.14 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 59 LTYSWYNLDVFGAVHQPGSgWKQLLNRVKGVLCNERhipaPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRS 138
Cdd:TIGR00955 1 LTYSWRNSDVFGRVAQDGS-WKQLVSRLRGCFCRER----PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 139 SKGVQISPStvRLLNGHPIDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHTTKKQKIQRVDQVIQDLSLGKC 218
Cdd:TIGR00955 76 PKGVKGSGS--VLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKC 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 219 QNTLIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFEL 298
Cdd:TIGR00955 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFEL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 299 FDKILLMAEGRVAFLGTPGEAVDFFSYIGAQCPNNYNPADFYVQVLAVVPGREAESRDRIAKICDNFAVGKVSREMEQNF 378
Cdd:TIGR00955 234 FDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNT 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 379 QKME-KSNGLNKEDEN--GFTYKASWFMQFRAVLWRSWLSVLKEPLLVKVRLFQTTMVAVLIGLIFLGQQLTQVGVMNIN 455
Cdd:TIGR00955 314 NLWSgKAGGLVKDSENmeGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 456 GAIFLFLTNMTFQNAFATITVFTSELPVFIRETRSRLYRCDTYFLGKTIAELPLFLIVPLLFTAIAYPMIGLRPGIDHFL 535
Cdd:TIGR00955 394 GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFL 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 536 TALALVTLVANVSTSFGYLISCACSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYFKWLSYLSWFRYANEGLLINQWA 615
Cdd:TIGR00955 474 TFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWS 553
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 616 DVKPGEitCTSSNTT--CPSSGEVILETLNFSASDLPFDFVGLALLIVGFRISAYIALRVRARRKE 679
Cdd:TIGR00955 554 DVDNIE--CTSANTTgpCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
101-672 |
2.86e-95 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 307.96 E-value: 2.86e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRsskgVQISPSTVRLLNGHPIDAKEMQARCAYVQQDDLFIGSLT 180
Cdd:PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR----IQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 181 AREHLIFQAMVRMPRHTTKKQKIQRVDQVIQDLSLGKCQNTLIGvPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTS 260
Cdd:PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 261 GLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGEAVDFFSYIGAQCPNNYNPADFY 340
Cdd:PLN03211 236 GLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 341 V-------QVLAVVPGREAESRDRIAKICDNFAVGKV--SREMEQNFQKMEKSNGLNKEDENG---FTYKASWFMQFRAV 408
Cdd:PLN03211 316 LdlangvcQTDGVSEREKPNVKQSLVASYNTLLAPKVkaAIEMSHFPQANARFVGSASTKEHRssdRISISTWFNQFSIL 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 409 LWRSwLSVLKEPLLVKVRLFQTTMVAVLIGLIFLGQQLTQvgVMNINGAIFLFLTNMTFQNAFATITVFTSELPVFIRET 488
Cdd:PLN03211 396 LQRS-LKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRD--VQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKER 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 489 RSRLYRCDTYFLGKTIAELPLFLIVPLLFTAIAYPMIGLRPGIDHFLTALALVTLVANVSTSFGYLISCACSSTSMALSV 568
Cdd:PLN03211 473 ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTI 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 569 GPPVIIPFLLFGGFFLNsgSVPVYFKWLSYLSWFRYANEgLLINqwadVKPGEITCTSSNTTCPSSGEVILETLNFSASD 648
Cdd:PLN03211 553 VTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYR-LLIN----VQYGEGKRISSLLGCSLPHGSDRASCKFVEED 625
|
570 580 590
....*....|....*....|....*....|
gi 618014015 649 L-----PFDFVG-LALLIVGFRISAYIALR 672
Cdd:PLN03211 626 VagqisPATSVSvLIFMFVGYRLLAYLALR 655
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
90-642 |
4.80e-90 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 306.65 E-value: 4.80e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 90 LCNERHIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGVqISPSTvRLLNGHPIDAKeMQARCAYV 169
Cdd:TIGR00956 765 LTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV-ITGGD-RLVNGRPLDSS-FQRSIGYV 841
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 170 QQDDLFIGSLTAREHLIFQAMVRMPRHTTKKQKIQRVDQVIQDLSLGKCQNTLIGVPGrvKGLSGGERKRLAFASEALTD 249
Cdd:TIGR00956 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG--EGLNVEQRKRLTIGVELVAK 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 250 PPLLI-CDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEG-RVAFLGTPGEA----VDFF 323
Cdd:TIGR00956 920 PKLLLfLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGgQTVYFGDLGENshtiINYF 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 324 SYIGA-QCPNNYNPADFYVQVLAVVPGREAESrdriakicDNFAVGKVSREMEQN---FQKMEKS---NGLNKEDENGFT 396
Cdd:TIGR00956 1000 EKHGApKCPEDANPAEWMLEVIGAAPGAHANQ--------DYHEVWRNSSEYQAVkneLDRLEAElskAEDDNDPDALSK 1071
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 397 YKASWFMQFRAVLWRSWLSVLKEPLLVKVRLFQTTMVAVLIGLIFLGQQLTQVGVMNINGAIFLFLTNMTFQNAFATITV 476
Cdd:TIGR00956 1072 YAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPF 1151
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 477 FTSELPVFIRETRSRLYRCDTYFLGKTIAELPLFLIVPLLFTAIAYPMIGL-----RPGIDHFLTALA--LVTLVANVST 549
Cdd:TIGR00956 1152 VAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFywnasKTGQVHERGVLFwlLSTMFFLYFS 1231
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 550 SFGYLISCACSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYFKWLSYLSWFRYANEGLLINQWADVkpgEITC--TSS 627
Cdd:TIGR00956 1232 TLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADV---PVTCkvKEL 1308
|
570
....*....|....*
gi 618014015 628 NTTCPSSGEVILETL 642
Cdd:TIGR00956 1309 LTFNPPSGQTCGEYM 1323
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
103-314 |
2.32e-76 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 244.10 E-value: 2.32e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGVQISpSTVrLLNGHPIDAKEMQARCAYVQQDDLFIGSLTAR 182
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS-GQI-LFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 183 EHLIFQAMVRMPRHTTKKQKIQRVDqviqDLSLGKCQNTLIGVPgRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGL 262
Cdd:cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVE----DVLLRDLALTRIGGN-LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 618014015 263 DSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLG 314
Cdd:cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
100-314 |
1.84e-71 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 230.13 E-value: 1.84e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSsKGVQISpSTVrLLNGHPIDAKEMQARCAYVQQDDLFIGSL 179
Cdd:cd03213 21 GKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVS-GEV-LINGRPLDKRSFRKIIGYVPQDDILHPTL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLIFQAmvrmprhttkkqkiqrvdqviqdlslgkcqntligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPT 259
Cdd:cd03213 98 TVRETLMFAA--------------------------------------KLRGLSGGERKRVSIALELVSNPSLLFLDEPT 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 260 SGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLG 314
Cdd:cd03213 140 SGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
93-617 |
1.86e-63 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 229.35 E-value: 1.86e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 93 ERHIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKG-----VQISpstvrllnGHPiDAKEMQARCA 167
Cdd:PLN03140 885 EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGyiegdIRIS--------GFP-KKQETFARIS 955
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 168 -YVQQDDLFIGSLTAREHLIFQAMVRMPRHTTKKQKIQRVDQVIQDLSLGKCQNTLIGVPGrVKGLSGGERKRLAFASEA 246
Cdd:PLN03140 956 gYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG-VTGLSTEQRKRLTIAVEL 1034
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 247 LTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAE-GRVAFLGTPG----EAVD 321
Cdd:PLN03140 1035 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRgGQVIYSGPLGrnshKIIE 1114
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 322 FFSYIGA--QCPNNYNPADFYVQVLAVVpgreAESRDRIakicdNFAVGKVSREMEQNFQKMEKSNGLNKEDENGF---- 395
Cdd:PLN03140 1115 YFEAIPGvpKIKEKYNPATWMLEVSSLA----AEVKLGI-----DFAEHYKSSSLYQRNKALVKELSTPPPGASDLyfat 1185
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 396 TYKASWFMQFRAVLWRSWLSVLKEPLLVKVRLFQTTMVAVLIGLIF--LGQQLTQVGVMN-INGAIFLFLTNMTFQNAFA 472
Cdd:PLN03140 1186 QYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFwkVGTKRSNANDLTmVIGAMYAAVLFVGINNCST 1265
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 473 TITVFTSELPVFIRETRSRLYRCDTYFLGKTIAELPLFLIVPLLFTAIAYPMIGLRpgidhfLTALALVTLVANVSTSFG 552
Cdd:PLN03140 1266 VQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFE------WTAAKFFWFYFISFFSFL 1339
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 553 YLISCACsstsMALSVGPPVIIP----------FLLFGGFFLNSGSVP---VYFKWLSYLSWFRYaneGLLINQWADV 617
Cdd:PLN03140 1340 YFTYYGM----MTVSLTPNQQVAaifaaafyglFNLFSGFFIPRPKIPkwwVWYYWICPVAWTVY---GLIVSQYGDV 1410
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
81-638 |
3.05e-62 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 225.37 E-value: 3.05e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 81 QLLNRVKGVLCNERHipAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSkGVQISPSTVRLLNGHPID-- 158
Cdd:TIGR00956 56 KILTRGFRKLKKFRD--TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD-GFHIGVEGVITYDGITPEei 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 159 AKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRH----TTKKQKIQRV-DQVIQDLSLGKCQNTLIGvPGRVKGLS 233
Cdd:TIGR00956 133 KKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNrpdgVSREEYAKHIaDVYMATYGLSHTRNTKVG-NDFVRGVS 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 234 GGERKRLAFAsEALTDPPLLIC-DEPTSGLDSFMAHSVVQVLKKLSQKGK-TVILTIHQPSSELFELFDKILLMAEGRVA 311
Cdd:TIGR00956 212 GGERKRVSIA-EASLGGAKIQCwDNATRGLDSATALEFIRALKTSANILDtTPLVAIYQCSQDAYELFDKVIVLYEGYQI 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 312 FLGTPGEAVDFFSYIGAQCPNNYNPADFYVQVLA-----VVPGRE---AESRDRIAKICDNFAVGK-VSREMEQNFQKME 382
Cdd:TIGR00956 291 YFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSpaerqIKPGYEkkvPRTPQEFETYWRNSPEYAqLMKEIDEYLDRCS 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 383 KSNGLNKEDENGFT-----------YKASWFMQFRAVLWRSWLSVLKEPLLVKVRLFQTTMVAVLIGLIFLGQQLTQVGV 451
Cdd:TIGR00956 371 ESDTKEAYRESHVAkqskrtrpsspYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDF 450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 452 MNINGAIFL-FLTNMTfqNAFATITVFTSELPVFIRETRSRLYRCDTYFLGKTIAELPLFLIVPLLFTAIAYPMIGLRPG 530
Cdd:TIGR00956 451 YSRGGALFFaILFNAF--SSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 531 IDHFLTALALVTLVANVSTSFGYLISCACSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYFKWLSYLSWFRYANEGLL 610
Cdd:TIGR00956 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608
|
570 580 590
....*....|....*....|....*....|....*...
gi 618014015 611 INQWADVK----------PGEITCTSSNTTCPSSGEVI 638
Cdd:TIGR00956 609 VNEFHGRRfecsqyvpsgGGYDNLGVTNKVCTVVGAEP 646
|
|
| ABC2_membrane |
pfam01061 |
ABC-2 type transporter; |
408-612 |
1.36e-50 |
|
ABC-2 type transporter;
Pssm-ID: 426023 [Multi-domain] Cd Length: 204 Bit Score: 174.77 E-value: 1.36e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 408 VLWRSWLSVLKEPLLVKVRLFQTTMVAVLIGLIFlGQQLTQVGVMNINGAIFLFLTNMTFQNAFATITVFTSELPVFIRE 487
Cdd:pfam01061 1 LLKREFLRRWRDPSLGLWRLIQPILMALIFGTLF-GNLGNQQGGLNRPGLLFFSILFNAFSALSGISPVFEKERGVLYRE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 488 TRSRLYRCDTYFLGKTIAELPLFLIVPLLFTAIAYPMIGLRPGIDHFLTALALVTLVANVSTSFGYLISCACSSTSMALS 567
Cdd:pfam01061 80 LASPLYSPSAYVLAKILSELPLSLLQSLIFLLIVYFMVGLPPSAGRFFLFLLVLLLTALAASSLGLFISALAPSFEDASQ 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 618014015 568 VGPPVIIPFLLFGGFFLNSGSVPVYFKWLSYLSWFRYANEGLLIN 612
Cdd:pfam01061 160 LGPLVLLPLLLLSGFFIPIDSMPVWWQWIYYLNPLTYAIEALRAN 204
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
96-308 |
2.74e-50 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 173.58 E-value: 2.74e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 96 IPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGVqISPStvRLLNGHPIDaKEMQARCAYVQQDDLF 175
Cdd:cd03232 15 VKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGE--ILINGRPLD-KNFQRSTGYVEQQDVH 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 IGSLTAREHLIFQAMVRmprhttkkqkiqrvdqviqdlslgkcqntligvpgrvkGLSGGERKRLAFASEALTDPPLLIC 255
Cdd:cd03232 91 SPNLTVREALRFSALLR--------------------------------------GLSVEQRKRLTIGVELAAKPSILFL 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 618014015 256 DEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEG 308
Cdd:cd03232 133 DEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
100-329 |
1.69e-48 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 170.24 E-value: 1.69e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPS--TVRLlNGHPI--DAKEMQARCAYVQQDDLF 175
Cdd:COG1131 12 DKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLL-----GL-LRPTsgEVRV-LGEDVarDPAEVRRRIGYVPQEPAL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 IGSLTAREHLIFQAMVR-MPRHTTKKqkiqRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLI 254
Cdd:COG1131 85 YPDLTVRENLRFFARLYgLPRKEARE----RIDELLELFGLTDAADR------KVGTLSGGMKQRLGLALALLHDPELLI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPsSELFELFDKILLMAEGRVAFLGTPGEAVD------FFSYIGA 328
Cdd:COG1131 155 LDEPTSGLDPEARRELWELLRELAAEGKTVLLSTHYL-EEAERLCDRVAIIDKGRIVADGTPDELKArlledvFLELTGE 233
|
.
gi 618014015 329 Q 329
Cdd:COG1131 234 E 234
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
103-613 |
1.54e-44 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 172.34 E-value: 1.54e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGVQISPSTVrlLNGHPIDAKEMQARCAYVQQDDLFIGSLTAR 182
Cdd:PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEIT--YNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 183 EHLIFQA--------------MVRMPRHT-----------TKKQKIQRV------DQVIQDLSLGKCQNTLIGvPGRVKG 231
Cdd:PLN03140 258 ETLDFSArcqgvgtrydllseLARREKDAgifpeaevdlfMKATAMEGVksslitDYTLKILGLDICKDTIVG-DEMIRG 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 232 LSGGERKRLAfASEALTDP-PLLICDEPTSGLDSFMAHSVVQVLKKLSQKGK-TVILTIHQPSSELFELFDKILLMAEGR 309
Cdd:PLN03140 337 ISGGQKKRVT-TGEMIVGPtKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEaTVLMSLLQPAPETFDLFDDIILLSEGQ 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 310 VAFLGTPGEAVDFFSYIGAQCPNNYNPADFYVQVLA----------------VVPGREAESRDRiakicdNFAVG-KVSR 372
Cdd:PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSkkdqeqywadrnkpyrYISVSEFAERFK------SFHVGmQLEN 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 373 EMEQNFqkmEKSNGlNKEDENGFTYKASWFMQFRAVLWRSWLSVLKEPLLVKVRLFQTTMVAVLIGLIFLGQQL----TQ 448
Cdd:PLN03140 490 ELSVPF---DKSQS-HKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMhtrnEE 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 449 VGVMNINGAIFLFLTNMTfqNAFATITVFTSELPVFIRETRSRLYRCDTYFLGKTIAELPLFLIVPLLFTAIAYPMIGLR 528
Cdd:PLN03140 566 DGALYIGALLFSMIINMF--NGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFA 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 529 PGIDHFLTALALVTLVANVSTSFGYLISCACSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYFKWLSYLSWFRYANEG 608
Cdd:PLN03140 644 PEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNA 723
|
....*
gi 618014015 609 LLINQ 613
Cdd:PLN03140 724 LAVNE 728
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
103-314 |
1.01e-39 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 144.71 E-value: 1.01e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGVQISPSTvrLLNGHPidAKEMQARC----AYVQQDDLFIGS 178
Cdd:cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI--HYNGIP--YKEFAEKYpgeiIYVSEEDVHFPT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTAREHLIFQAmvrmprhttkkqkiqrvdqviqdlslgKCQNTLIgvpgrVKGLSGGERKRLAFAsEALTDPPLLIC-DE 257
Cdd:cd03233 98 LTVRETLDFAL---------------------------RCKGNEF-----VRGISGGERKRVSIA-EALVSRASVLCwDN 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPSSELFELFDKILLMAEGRVAFLG 314
Cdd:cd03233 145 STRGLDSSTALEILKCIRTMADVlKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
101-318 |
8.27e-39 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 143.46 E-value: 8.27e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDAKEMQAR--CAYVQQDDLFI 176
Cdd:COG4555 14 VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAglLKPDSG-SI------LIDGEDVRKEPREARrqIGVLPDERGLY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHLIFQAMVRmprHTTKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICD 256
Cdd:COG4555 87 DRLTVRENIRYFAELY---GLFDEELKKRIEELIELLGLEEFLDR------RVGELSTGMKKKVALARALVHDPKVLLLD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG4555 158 EPTNGLDVMARRLLREILRALKKEGKTVLFSSHIM-QEVEALCDRVVILHKGKVVAQGSLDE 218
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
99-318 |
3.29e-37 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 138.41 E-value: 3.29e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVrLLNGHPI--DAKEMQARCAYVQQDDL 174
Cdd:cd03263 13 GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTgeLRPTSG------TA-YINGYSIrtDRKAARQSLGYCPQFDA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREHLIFQAMVrmpRHTTKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLI 254
Cdd:cd03263 86 LFDELTVREHLRFYARL---KGLPKSEIKEEVELLLRVLGLTDKANK------RARTLSGGMKRKLSLAIALIGGPSVLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLsQKGKTVILTIHQPsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03263 157 LDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQE 218
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
103-309 |
4.82e-35 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 131.82 E-value: 4.82e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPIDA---KEMQARCAYVQQ--DDLFIG 177
Cdd:cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLN-----GLLGPTSGEVLVDGKDLTKlslKELRRKVGLVFQnpDDQFFG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SlTAREHLIFqAMVRMprHTTKKQKIQRVDQVIQDLSLGKCQNTLIgvpgrvKGLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:cd03225 91 P-TVEEEVAF-GLENL--GLPEEEIEERVEEALELVGLEGLRDRSP------FTLSGGQKQRVAIAGVLAMDPDILLLDE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPsSELFELFDKILLMAEGR 309
Cdd:cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
100-310 |
8.18e-34 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 127.13 E-value: 8.18e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPS--TVRLlNGHPI--DAKEMQARCAYVQQDDLF 175
Cdd:cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIIL-----GL-LKPDsgEIKV-LGKDIkkEPEEVKRRIGYLPEEPSL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 IGSLTAREHLIfqamvrmprhttkkqkiqrvdqviqdlslgkcqntligvpgrvkgLSGGERKRLAFASEALTDPPLLIC 255
Cdd:cd03230 85 YENLTVRENLK---------------------------------------------LSGGMKQRLALAQALLHDPELLIL 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 256 DEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPsSELFELFDKILLMAEGRV 310
Cdd:cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
101-318 |
1.66e-33 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 128.39 E-value: 1.66e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVrLLNGHPIDA---KEMQA---RCAYV-QQ 171
Cdd:cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVglLRPDSG------EV-LIDGEDISGlseAELYRlrrRMGMLfQS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 DDLFiGSLTAREHLIFqaMVRMprHTtkkqkiQRVDQVIQDLSLGKCQntLIGVPGRVK----GLSGGERKRLAFASEAL 247
Cdd:cd03261 86 GALF-DSLTVFENVAF--PLRE--HT------RLSEEEIREIVLEKLE--AVGLRGAEDlypaELSGGMKKRVALARALA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 618014015 248 TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQ-KGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKeLGLTSIMVTHD-LDTAFAIADRIAVLYDGKIVAEGTPEE 223
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
101-319 |
2.01e-33 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 127.83 E-value: 2.01e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVrLLNGHPIDAKEMQA---RCAYVQQ--DD 173
Cdd:COG1122 14 TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNglLKPTSG------EV-LVDGKDITKKNLRElrrKVGLVFQnpDD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSlTAREHLIFqamvrMPRHT--TKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASeAL-TDP 250
Cdd:COG1122 87 QLFAP-TVEEDVAF-----GPENLglPREEIRERVEEALELVGLEHLADR------PPHELSGGQKQRVAIAG-VLaMEP 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 251 PLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPsSELFELFDKILLMAEGRVAFLGTPGEA 319
Cdd:COG1122 154 EVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDL-DLVAELADRVIVLDDGRIVADGTPREV 221
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
100-321 |
8.46e-33 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 126.74 E-value: 8.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGvQISPS--TVRLLnGHPIDAKemQARCAYVQQDDLFIG 177
Cdd:COG1121 18 GRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAIL-----G-LLPPTsgTVRLF-GKPPRRA--RRRIGYVPQRAEVDW 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 S--LTAREhlifqaMVRMPRHT--------TKKQKiQRVDQVIQDLSLGKCQNTLIGvpgrvkGLSGGERKRLAFAsEAL 247
Cdd:COG1121 89 DfpITVRD------VVLMGRYGrrglfrrpSRADR-EAVDEALERVGLEDLADRPIG------ELSGGQQQRVLLA-RAL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 248 -TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPsSELFELFDKILLMAEGRVAFlGTPGEAVD 321
Cdd:COG1121 155 aQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDL-GAVREYFDRVLLLNRGLVAH-GPPEEVLT 227
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
99-321 |
1.38e-32 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 126.31 E-value: 1.38e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVrLLNGHPI---DAKEMQARCAYVQQDD 173
Cdd:COG1120 12 GGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAglLKPSSG------EV-LLDGRDLaslSRRELARRIAYVPQEP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSLTAREhlifqaMVRMPRH-------TTKKQKIQRVDQVIQDLSLGKCQNTLIGvpgrvkGLSGGERKRLAFASeA 246
Cdd:COG1120 85 PAPFGLTVRE------LVALGRYphlglfgRPSAEDREAVEEALERTGLEHLADRPVD------ELSGGERQRVLIAR-A 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 247 LT-DPPLLICDEPTSGLDsfMAH--SVVQVLKKLSQ-KGKTVILTIHQPssEL-FELFDKILLMAEGRVAFLGTPGEAVD 321
Cdd:COG1120 152 LAqEPPLLLLDEPTSHLD--LAHqlEVLELLRRLAReRGRTVVMVLHDL--NLaARYADRLVLLKDGRIVAQGPPEEVLT 227
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
101-318 |
4.75e-32 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 124.32 E-value: 4.75e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDA------KEMQARCAYV-QQ 171
Cdd:COG1127 18 RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIglLRPDSG-EI------LVDGQDITGlsekelYELRRRIGMLfQG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 DDLFiGSLTAREHLifqaMVRMPRHT--TKKQKIQRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFAsEAL-T 248
Cdd:COG1127 91 GALF-DSLTVFENV----AFPLREHTdlSEAEIRELVLEKLELVGLPGAADKM---PSE---LSGGMRKRVALA-RALaL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 249 DPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPSSeLFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG1127 159 DPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDS-AFAIADRVAVLADGKIIAEGTPEE 228
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
100-310 |
5.84e-32 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 123.37 E-value: 5.84e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAF--RSSKGvqispsTVRLlNGHPIDAKEMQARCA-------YVQ 170
Cdd:cd03255 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGldRPTSG------EVRV-DGTDISKLSEKELAAfrrrhigFVF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 171 QDDLFIGSLTAREHlifqamVRMPRHTTKKQKIQRVDQVIQDLslgkcqnTLIGVPGR----VKGLSGGERKRLAFAsEA 246
Cdd:cd03255 89 QSFNLLPDLTALEN------VELPLLLAGVPKKERRERAEELL-------ERVGLGDRlnhyPSELSGGQQQRVAIA-RA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 247 L-TDPPLLICDEPTSGLDSFMAHSVVQVLKKLS-QKGKTVILTIHQPssELFELFDKILLMAEGRV 310
Cdd:cd03255 155 LaNDPKIILADEPTGNLDSETGKEVMELLRELNkEAGTTIVVVTHDP--ELAEYADRIIELRDGKI 218
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
45-318 |
3.51e-31 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 128.73 E-value: 3.51e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 45 GTLSPPSPTLTADNLTYSWynldvfgavhqpgsgwkqllnrvkgvlcnerhiPAPRKHLLKNVSGVAYPGELLAVMGSSG 124
Cdd:COG4987 325 PAPAPGGPSLELEDVSFRY---------------------------------PGAGRPVLDGLSLTLPPGERVAIVGPSG 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 125 AGKTTLLNAIA-FRSSKGVQIspstvrLLNGHPI---DAKEMQARCAYVQQD-DLFIGSL-----TAREHLIFQAMVRMp 194
Cdd:COG4987 372 SGKSTLLALLLrFLDPQSGSI------TLGGVDLrdlDEDDLRRRIAVVPQRpHLFDTTLrenlrLARPDATDEELWAA- 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 195 rhttkkqkIQRV--DQVIQDLSLGkcQNTLIGVPGRvkGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQ 272
Cdd:COG4987 445 --------LERVglGDWLAALPDG--LDTWLGEGGR--RLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLA 512
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 618014015 273 VLKKLSQkGKTVILTIHQPSseLFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG4987 513 DLLEALA-GRTVLLITHRLA--GLERMDRILVLEDGRIVEQGTHEE 555
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
98-318 |
3.61e-31 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 128.72 E-value: 3.61e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 98 APRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGvQISPSTVR-LLNGHP---IDAKEMQARCAYV-QQD 172
Cdd:COG4988 347 PGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLL-----G-FLPPYSGSiLINGVDlsdLDPASWRRQIAWVpQNP 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 DLFIGSLtaREHLifqamvRMPRHTTKKQKIQRV------DQVIQDLSLGkcQNTLIGVPGRvkGLSGGERKRLAFASEA 246
Cdd:COG4988 421 YLFAGTI--RENL------RLGRPDASDEELEAAleaaglDEFVAALPDG--LDTPLGEGGR--GLSGGQAQRLALARAL 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 618014015 247 LTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSqKGKTVILTIHQPSseLFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG4988 489 LRDAPLLLLDEPTAHLDAETEAEILQALRRLA-KGRTVILITHRLA--LLAQADRILVLDDGRIVEQGTHEE 557
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
103-309 |
3.89e-31 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 120.66 E-value: 3.89e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGvQISPS--TVRLlNGHPIDAK--EMQARCAYVQQDDLFIGS 178
Cdd:COG4133 17 LFSGLSFTLAAGEALALTGPNGSGKTTLLRILA-----G-LLPPSagEVLW-NGEPIRDAreDYRRRLAYLGHADGLKPE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTAREHLIFQAMVRMPRHTTkkqkiQRVDQVIQDLSLGKCQNTLIGVpgrvkgLSGGERKRLAFASEALTDPPLLICDEP 258
Cdd:COG4133 90 LTVRENLRFWAALYGLRADR-----EAIDEALEAVGLAGLADLPVRQ------LSAGQKRRVALARLLLSPAPLWLLDEP 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 618014015 259 TSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPsseLFELFDKILLMAEGR 309
Cdd:COG4133 159 FTALDAAGVALLAELIAAHLARGGAVLLTTHQP---LELAAARVLDLGDFK 206
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
99-309 |
7.39e-31 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 118.12 E-value: 7.39e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFrsskgvQISPSTVR-LLNGHPIDAKEMQARcayvqqddlfig 177
Cdd:cd00267 10 GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG------LLKPTSGEiLIDGKDIAKLPLEEL------------ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 sltarehlifqamvrmprhttkKQKIQRVDQviqdlslgkcqntligvpgrvkgLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:cd00267 72 ----------------------RRRIGYVPQ-----------------------LSGGQRQRVALARALLLNPDLLLLDE 106
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPsSELFELFDKILLMAEGR 309
Cdd:cd00267 107 PTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
100-314 |
1.21e-30 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 119.56 E-value: 1.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGvQISPS--TVRLLnghPIDAKEMQARCAYVQQ----DD 173
Cdd:cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL-----G-LLKPTsgSIRVF---GKPLEKERKRIGYVPQrrsiDR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFigSLTAREhliFQAMVRMP-----RHTTKKQKiQRVDQVIQDLSLGKCQNTLIGvpgrvkGLSGGERKRLAFASEALT 248
Cdd:cd03235 82 DF--PISVRD---VVLMGLYGhkglfRRLSKADK-AKVDEALERVGLSELADRQIG------ELSGGQQQRVLLARALVQ 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 249 DPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSeLFELFDKILLMAeGRVAFLG 314
Cdd:cd03235 150 DPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLLN-RTVVASG 213
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
99-314 |
1.73e-30 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 119.22 E-value: 1.73e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGeLLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRLlNGHPI--DAKEMQARCAYVQQDDL 174
Cdd:cd03264 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAtlTPPSSG------TIRI-DGQDVlkQPQKLRRRIGYLPQEFG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREHLIFQA-MVRMPrhttKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLL 253
Cdd:cd03264 83 VYPNFTVREFLDYIAwLKGIP----SKEVKARVDEVLELVNLGDRAKK------KIGSLSGGMRRRVGIAQALVGDPSIL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSqKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLG 314
Cdd:cd03264 153 IVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHI-VEDVESLCNQVAVLNKGKLVFEG 211
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
102-310 |
1.75e-30 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 119.38 E-value: 1.75e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 102 HLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQiSPS--TVRlLNGHPI---DAKEMQA-RCAYV----QQ 171
Cdd:COG1136 22 TALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILG-----GLD-RPTsgEVL-IDGQDIsslSERELARlRRRHIgfvfQF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 DDLfIGSLTAREHLifqAMVRMPRHTTKKQKIQRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFAsEAL-TDP 250
Cdd:COG1136 95 FNL-LPELTALENV---ALPLLLAGVSRKERRERARELLERVGLGDRLDHR---PSQ---LSGGQQQRVAIA-RALvNRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 251 PLLICDEPTSGLDSFMAHSVVQVLKKLS-QKGKTVILTIHQPssELFELFDKILLMAEGRV 310
Cdd:COG1136 164 KLILADEPTGNLDSKTGEEVLELLRELNrELGTTIVMVTHDP--ELAARADRVIRLRDGRI 222
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
104-260 |
6.44e-30 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 115.44 E-value: 6.44e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDAKEMQA---RCAYVQQDDLFIGS 178
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAglLSPTEG-TI------LLDGQDLTDDERKSlrkEIGYVFQDPQLFPR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTAREHLIFQAMVRMPRHTTKKqkiQRVDQVIQDLSLGKCQNTLIGVPGrvKGLSGGERKRLAFASEALTDPPLLICDEP 258
Cdd:pfam00005 74 LTVRENLRLGLLLKGLSKREKD---ARAEEALEKLGLGDLADRPVGERP--GTLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
..
gi 618014015 259 TS 260
Cdd:pfam00005 149 TA 150
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
97-318 |
1.76e-28 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 121.48 E-value: 1.76e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 97 PAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHP---IDAKEMQARCAYVQQ 171
Cdd:COG2274 484 PGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLglYEPTSG-RI------LIDGIDlrqIDPASLRRQIGVVLQ 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 DD-LFIGSLtaREHLifqamvRMPRHTTKKQKIQR------VDQVIQDLSLGKcqNTLIGVPGRvkGLSGGERKRLAFAS 244
Cdd:COG2274 557 DVfLFSGTI--RENI------TLGDPDATDEEIIEaarlagLHDFIEALPMGY--DTVVGEGGS--NLSGGQRQRLAIAR 624
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 245 EALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQkGKTVILTIHQPSseLFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG2274 625 ALLRNPRILILDEATSALDAETEAIILENLRRLLK-GRTVIIIAHRLS--TIRLADRIIVLDKGRIVEDGTHEE 695
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
101-309 |
6.68e-28 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 110.17 E-value: 6.68e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPI---DAKEMQARCAYVQQDD-L 174
Cdd:cd03228 15 KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLrlYDPTSG-EI------LIDGVDLrdlDLESLRKNIAYVPQDPfL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLtaREHLifqamvrmprhttkkqkiqrvdqviqdlslgkcqntligvpgrvkgLSGGERKRLAFASEALTDPPLLI 254
Cdd:cd03228 88 FSGTI--RENI----------------------------------------------LSGGQRQRIAIARALLRDPPILI 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSqKGKTVILTIHQPSSelFELFDKILLMAEGR 309
Cdd:cd03228 120 LDEATSALDPETEALILEALRALA-KGKTVIVIAHRLST--IRDADRIIVLDDGR 171
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
103-310 |
1.80e-27 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 110.04 E-value: 1.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVrLLNGHPIDAKEMQARCAYVQQD-DLFIGSL 179
Cdd:cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAglIKESSG------SI-LLNGKPIKAKERRKSIGYVMQDvDYQLFTD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLIFQAMvrmprhtTKKQKIQRVDQVIQDLSLG--KCQNTLIgvpgrvkgLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:cd03226 88 SVREELLLGLK-------ELDAGNEQAETVLKDLDLYalKERHPLS--------LSGGQKQRLAIAAALLSGKDLLIFDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPssE-LFELFDKILLMAEGRV 310
Cdd:cd03226 153 PTSGLDYKNMERVGELIRELAAQGKAVIVITHDY--EfLAKVCDRVLLLANGAI 204
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
95-310 |
3.84e-27 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 109.52 E-value: 3.84e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 95 HIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FrsskgvqISPSTVRL-LNGHPIDAKEMQA---RCAYV 169
Cdd:COG4619 7 SFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALAdL-------DPPTSGEIyLDGKPLSAMPPPEwrrQVAYV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 170 QQD-DLFIGslTAREHLIFQAMVRMPRHTTKKQK--IQRVDqvIQDLSLGKcqntligvpgRVKGLSGGERKRLAFASEA 246
Cdd:COG4619 80 PQEpALWGG--TVRDNLPFPFQLRERKFDRERALelLERLG--LPPDILDK----------PVERLSGGERQRLALIRAL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 247 LTDPPLLICDEPTSGLDSFMAHSVVQVLKKLS-QKGKTVILTIHQPsSELFELFDKILLMAEGRV 310
Cdd:COG4619 146 LLQPDVLLLDEPTSALDPENTRRVEELLREYLaEEGRAVLWVSHDP-EQIERVADRVLTLEAGRL 209
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
101-318 |
1.92e-26 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 108.42 E-value: 1.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKG-VQISPSTVRLLNGHPIdaKEMQARCAYVQQDDLFIG 177
Cdd:cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLngLVEPTSGsVLIDGTDINKLKGKAL--RQLRRQIGMIFQQFNLIE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHLIfqaMVRMPRHTT--------KKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTD 249
Cdd:cd03256 92 RLSVLENVL---SGRLGRRSTwrslfglfPKEEKQRALAALERVGLLDKAYQ------RADQLSGGQQQRVAIARALMQQ 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 250 PPLLICDEPTSGLDSFMAHSVVQVLKKL-SQKGKTVILTIHQPssELF-ELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03256 163 PKLILADEPVASLDPASSRQVMDLLKRInREEGITVIVSLHQV--DLArEYADRIVGLKDGRIVFDGPPAE 231
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
104-318 |
5.52e-26 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 106.30 E-value: 5.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGVQIspstvrlLNGHPI--DAKEMQARCAYVQQDDLFIGSL 179
Cdd:cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTtlLKPTSGRAT-------VAGHDVvrEPREVRRRIGIVFQDLSVDDEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLIFQAMVR-MPRHTTKkqkiQRVDQVIQDLSLGKCQNTLigvpgrVKGLSGGERKRLAFASEALTDPPLLICDEP 258
Cdd:cd03265 89 TGWENLYIHARLYgVPGAERR----ERIDELLDFVGLLEAADRL------VKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 259 TSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03265 159 TIGLDPQTRAHVWEYIEKLKEEfGMTILLTTHY-MEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
113-314 |
9.56e-26 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 105.45 E-value: 9.56e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIA-----------------FRSSKGVQISPStvrllnghpidakemQARCAYV-QQDDL 174
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAglekpdggtivlngtvlFDSRKKINLPPQ---------------QRKIGLVfQQYAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FiGSLTAREHLIFQamvrMPRHTTKKQKIQrVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLI 254
Cdd:cd03297 87 F-PHLNVRENLAFG----LKRKRNREDRIS-VDELLDLLGLDHLLNR------YPAQLSGGEKQRVALARALAAQPELLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPsSELFELFDKILLMAEGRVAFLG 314
Cdd:cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNlNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
96-314 |
1.08e-25 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 105.53 E-value: 1.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 96 IPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGVqispSTVRLLNGH--PIDAKemqARCAYVQQ 171
Cdd:cd03266 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAglLEPDAGF----ATVDGFDVVkePAEAR---RRLGFVSD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 DDLFIGSLTAREHLIFQAMVrmprHTTKKQKI-QRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDP 250
Cdd:cd03266 86 STGLYDRLTARENLEYFAGL----YGLKGDELtARLEELADRLGMEELLDR------RVGGFSTGMRQKVAIARALVHDP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 251 PLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLG 314
Cdd:cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
99-318 |
1.11e-25 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 105.77 E-value: 1.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPI---DAKEMQARCAYVQQDD 173
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMrfYDPQKG-QI------LIDGIDIrdiSRKSLRSMIGVVLQDT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 -LFIGSLtaREHLifqamvRMPRHTTKKQKIQRVDQVIQ--DL--SLGKCQNTLIGVPGrvKGLSGGERKRLAFASEALT 248
Cdd:cd03254 87 fLFSGTI--MENI------RLGRPNATDEEVIEAAKEAGahDFimKLPNGYDTVLGENG--GNLSQGERQLLAIARAMLR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 249 DPPLLICDEPTSGLDSFMAHSVVQVLKKLsQKGKTVILTIHQPSSELFElfDKILLMAEGRVAFLGTPGE 318
Cdd:cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNA--DKILVLDDGKIIEEGTHDE 223
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
99-314 |
1.90e-25 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 103.67 E-value: 1.90e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPI---DAKEMQARCAYVQQdd 173
Cdd:cd03214 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAglLKPSSG-EI------LLDGKDLaslSPKELARKIAYVPQ-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 lfigsltarehlifqAMvrmprhttkkqkiQRVDqvIQDLSlGKCQNTLigvpgrvkglSGGERKRLAFASeALT-DPPL 252
Cdd:cd03214 81 ---------------AL-------------ELLG--LAHLA-DRPFNEL----------SGGERQRVLLAR-ALAqEPPI 118
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 253 LICDEPTSGLDSFMAHSVVQVLKKLS-QKGKTVILTIHQPSSELfELFDKILLMAEGRVAFLG 314
Cdd:cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLArERGKTVVMVLHDLNLAA-RYADRVILLKDGRIVAQG 180
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
102-318 |
1.95e-25 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 104.82 E-value: 1.95e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 102 HLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRLlNGHPIDAKEMQARC----AYVQQDDLF 175
Cdd:cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMglLPPRSG------SIRF-DGRDITGLPPHERAragiGYVPEGRRI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 IGSLTAREHLifqamvRMPRHTTKKQKIQRVDQVIQDL--SLGKCQNTLIGVpgrvkgLSGGERKRLAFASEALTDPPLL 253
Cdd:cd03224 87 FPELTVEENL------LLGAYARRRAKRKARLERVYELfpRLKERRKQLAGT------LSGGEQQMLAIARALMSRPKLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILtIHQPSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL-VEQNARFALEIADRAYVLERGRVVLEGTAAE 218
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
101-309 |
5.28e-25 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 102.27 E-value: 5.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDAKEMQ-----ARCAYVQQDD 173
Cdd:cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAglEEPDSG-SI------LIDGEDLTDLEDElpplrRRIGMVFQDF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSLTAREHLIFqamvrmprhttkkqkiqrvdqviqdlslgkcqntligvpgrvkGLSGGERKRLAFASEALTDPPLL 253
Cdd:cd03229 86 ALFPHLTVLENIAL-------------------------------------------GLSGGQQQRVALARALAMDPDVL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPsSELFELFDKILLMAEGR 309
Cdd:cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQlGITVVLVTHDL-DEAARLADRVVVLRDGK 178
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
101-318 |
5.65e-25 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 104.40 E-value: 5.65e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGV--QISPSTVRLLnGHP---IDAKEMQARCAYVQQD--D 173
Cdd:COG1119 16 KTILDDISWTVKPGEHWAILGPNGAGKSTLLSLIT-----GDlpPTYGNDVRLF-GERrggEDVWELRKRIGLVSPAlqL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSLTAREHLI--FQAMVRMPRHTTKKQkIQRVDQVIQDLSLGKCQNTLIGvpgrvkGLSGGERKRLAFAsEAL-TDP 250
Cdd:COG1119 90 RFPRDETVLDVVLsgFFDSIGLYREPTDEQ-RERARELLELLGLAHLADRPFG------TLSQGEQRRVLIA-RALvKDP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 251 PLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTI-HQPsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG1119 162 ELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVtHHV-EEIPPGITHVLLLKDGRVVAAGPKEE 229
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
104-305 |
6.28e-25 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 109.30 E-value: 6.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FRSSKGVQISpstvrlLNGHPI---DAKEMQARCAYV-QQDDLFIGS 178
Cdd:TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLgFVDPTEGSIA------VNGVPLadaDADSWRDQIAWVpQHPFLFAGT 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTARehlifqamVRMPRHTTKKQKIQRV------DQVIQDLSLGkcQNTLIGVPGRvkGLSGGERKRLAFASEALTDPPL 252
Cdd:TIGR02857 412 IAEN--------IRLARPDASDAEIREAleraglDEFVAALPQG--LDTPIGEGGA--GLSGGQAQRLALARAFLRDAPL 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 618014015 253 LICDEPTSGLDSFMAHSVVQVLKKLSQkGKTVILTIHQPssELFELFDKILLM 305
Cdd:TIGR02857 480 LLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRL--ALAALADRIVVL 529
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
97-353 |
6.82e-25 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 108.84 E-value: 6.82e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 97 PAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRLlNGHPIDA------KEMQARCAY 168
Cdd:COG1123 274 GKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLglLRPTSG------SILF-DGKDLTKlsrrslRELRRRVQM 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 169 VQQD--DLFIGSLTAREHLIFQAMVRmpRHTTKKQKIQRVDQVIQdlslgkcqntLIGVPGRVKG-----LSGGERKRLA 241
Cdd:COG1123 347 VFQDpySSLNPRMTVGDIIAEPLRLH--GLLSRAERRERVAELLE----------RVGLPPDLADrypheLSGGQRQRVA 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 242 FASeAL-TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGEa 319
Cdd:COG1123 415 IAR-ALaLEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHD-LAVVRYIADRVAVMYDGRIVEDGPTEE- 491
|
250 260 270
....*....|....*....|....*....|....*
gi 618014015 320 vdFFSyigaqcpnnyNPADFYVQVL-AVVPGREAE 353
Cdd:COG1123 492 --VFA----------NPQHPYTRALlAAVPSLDPA 514
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
99-318 |
9.64e-25 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 109.10 E-value: 9.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPI---DAKEMQARCAYVQQDD 173
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLrfYDPTSG-RI------LIDGVDIrdlTLESLRRQIGVVPQDT 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 -LF---------IGSLTAREHLIFQAMvrmprhttkkqKIQRVDQVIQDLSLGkcQNTLIGVPGRvkGLSGGERKRLAFA 243
Cdd:COG1132 424 fLFsgtirenirYGRPDATDEEVEEAA-----------KAAQAHEFIEALPDG--YDTVVGERGV--NLSGGQRQRIAIA 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 244 SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSqKGKTVILTIHQPSSelFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG1132 489 RALLKDPPILILDEATSALDTETEALIQEALERLM-KGRTTIVIAHRLST--IRNADRILVLDDGRIVEQGTHEE 560
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
97-318 |
1.81e-24 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 107.68 E-value: 1.81e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 97 PAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGVQISPSTvrLLNGHPI---DAKEMQARCAYVQQD- 172
Cdd:COG1123 15 PGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGRISGEV--LLDGRDLlelSEALRGRRIGMVFQDp 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 DLFIGSLTAREHLIFQAMVRMprhTTKKQKIQRVDQVIQdlslgkcqntLIGVPGRVK----GLSGGERKRLAFASEALT 248
Cdd:COG1123 93 MTQLNPVTVGDQIAEALENLG---LSRAEARARVLELLE----------AVGLERRLDryphQLSGGQRQRVAIAMALAL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 249 DPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG1123 160 DPDLLIADEPTTALDVTTQAEILDLLRELQRErGTTVLLITHDL-GVVAEIADRVVVMDDGRIVEDGPPEE 229
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
104-318 |
3.27e-24 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 101.74 E-value: 3.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKGvqispsTVrLLNGHPIDAKEMQARCAY-----VQQDDLFi 176
Cdd:cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIsgFLRPTSG------SV-LFDGEDITGLPPHEIARLgigrtFQIPRLF- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHLIFQAMVRMPRHT-------TKKQKIQRVDQVIQDLSLGKCQNTLIGvpgrvkGLSGGERKRLAFASeAL-T 248
Cdd:cd03219 88 PELTVLENVMVAAQARTGSGLllararrEEREARERAEELLERVGLADLADRPAG------ELSYGQQRRLEIAR-ALaT 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 249 DPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSeLFELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
97-318 |
3.62e-24 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 107.14 E-value: 3.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 97 PAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPS--TVRLlNGHPIDA--KEMQARC-AYVQQ 171
Cdd:COG4618 341 PGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLV-----GV-WPPTagSVRL-DGADLSQwdREELGRHiGYLPQ 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 D-DLFIGSltarehlIFQAMVRMPRHTTKK----QKIQRVDQVIQDLSLGkcQNTLIGVPGRvkGLSGGERKRLAFAsEA 246
Cdd:COG4618 414 DvELFDGT-------IAENIARFGDADPEKvvaaAKLAGVHEMILRLPDG--YDTRIGEGGA--RLSGGQRQRIGLA-RA 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 247 L-TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSseLFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG4618 482 LyGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRPS--LLAAVDKLLVLRDGRVQAFGPRDE 552
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
99-318 |
6.72e-24 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 100.77 E-value: 6.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIaFR---SSKGvQIspstvrLLNGHPI---DAKEMQARCAYVQQD 172
Cdd:cd03253 12 PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL-FRfydVSSG-SI------LIDGQDIrevTLDSLRRAIGVVPQD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 D-LF---------IGSLTAREHLIFQAMvrmprhttkkqKIQRVDQVIQDLSLGkcQNTLIGVPGrVKgLSGGERKRLAF 242
Cdd:cd03253 84 TvLFndtigynirYGRPDATDEEVIEAA-----------KAAQIHDKIMRFPDG--YDTIVGERG-LK-LSGGEKQRVAI 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 243 ASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSqKGKTVILTIHQPSSELFElfDKILLMAEGRVAFLGTPGE 318
Cdd:cd03253 149 ARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIVNA--DKIIVLKDGRIVERGTHEE 221
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
95-310 |
1.66e-23 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 99.20 E-value: 1.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 95 HIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPI---DAKEMQARCAYVQQ 171
Cdd:cd03245 11 SYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA-----GLYKPTSGSVLLDGTDIrqlDPADLRRNIGYVPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 D-DLFIGSLtaREHLifqaMVRMPRHTTkkQKIQR------VDQVIQDLSLGkcQNTLIGVPGRvkGLSGGERKRLAFAS 244
Cdd:cd03245 86 DvTLFYGTL--RDNI----TLGAPLADD--ERILRaaelagVTDFVNKHPNG--LDLQIGERGR--GLSGGQRQAVALAR 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 245 EALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSqKGKTVILTIHQPSseLFELFDKILLMAEGRV 310
Cdd:cd03245 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPS--LLDLVDRIIVMDSGRI 216
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
101-310 |
2.09e-23 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 98.44 E-value: 2.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPS--TVRLLNGHPIDAKEMQARCAYVQQDDLFIGS 178
Cdd:cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIIL-----GL-IKPDsgEITFDGKSYQKNIEALRRIGALIEAPGFYPN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTAREHLIFQAMVRMPRHttkkqkiQRVDQVIQDLSLGkcqntliGVPGR-VKGLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:cd03268 87 LTARENLRLLARLLGIRK-------KRIDEVLDVVGLK-------DSAKKkVKGFSLGMKQRLGIALALLGNPDLLILDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRV 310
Cdd:cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHL-LSEIQKVADRIGIINKGKL 204
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
100-318 |
2.28e-23 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 99.15 E-value: 2.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPSTVR-LLNGHPIDAKEMQARC----AYVQQDDL 174
Cdd:cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV-----GL-VKPDSGKiLLDGQDITKLPMHKRArlgiGYLPQEAS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREHLIfqAMVRMpRHTTKKQKIQRVDQVIQDLSLGKCQNTLIGvpgrvkGLSGGERKRLAFASEALTDPPLLI 254
Cdd:cd03218 86 IFRKLTVEENIL--AVLEI-RGLSKKEREEKLEELLEEFHITHLRKSKAS------SLSGGERRRVEIARALATNPKFLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPEE 219
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
101-311 |
6.59e-23 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 97.20 E-value: 6.59e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDAKEMQAR-CAYVQQDD-LFi 176
Cdd:cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAglERPDSG-EI------LIDGRDVTGVPPERRnIGMVFQDYaLF- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHLIFqAMVRmpRHTTKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICD 256
Cdd:cd03259 85 PHLTVAENIAF-GLKL--RGVPKAEIRARVRELLELVGLEGLLNR------YPHELSGGQQQRVALARALAREPSLLLLD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPsSELFELFDKILLMAEGRVA 311
Cdd:cd03259 156 EPLSALDAKLREELREELKELQRElGITTIYVTHDQ-EEALALADRIAVMNEGRIV 210
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
100-311 |
6.87e-23 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 98.34 E-value: 6.87e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVS-GVAyPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRLlNGHPI---DAKEMQARCAYVQQDD 173
Cdd:COG1124 17 RVPVLKDVSlEVA-PGESFGLVGESGSGKSTLLRALAglERPWSG------EVTF-DGRPVtrrRRKAFRRRVQMVFQDP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LfiGSLTAReHLIFQAMVRMPRHTTKKQKIQRVDQVIQDLslgkcqntliGVPGRVKG-----LSGGERKRLAFASEALT 248
Cdd:COG1124 89 Y--ASLHPR-HTVDRILAEPLRIHGLPDREERIAELLEQV----------GLPPSFLDryphqLSGGQRQRVAIARALIL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 249 DPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTI-HQPSSELFeLFDKILLMAEGRVA 311
Cdd:COG1124 156 EPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVsHDLAVVAH-LCDRVAVMQNGRIV 218
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
100-314 |
7.91e-23 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 96.97 E-value: 7.91e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPIDAkEMQARCAYVQQDDLFIGSL 179
Cdd:cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL-----GIILPDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLIFQAMVR-MPRHTTKKqkiqRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEP 258
Cdd:cd03269 86 KVIDQLVYLAQLKgLKKEEARR----RIDEWLERLELSEYANK------RVEELSKGNQQKVQFIAAVIHDPELLILDEP 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 259 TSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLG 314
Cdd:cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
103-321 |
1.02e-22 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 97.56 E-value: 1.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIafrssKGVQISPSTVRLLNGHP---IDAKEMQARCAYVQQDD-LFIGS 178
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLI-----QRFYVPENGRVLVDGHDlalADPAWLRRQVGVVLQENvLFNRS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LtaREHlIFQAMVRMPRH-TTKKQKIQRVDQVIQDLSLGkcQNTLIGVPGrvKGLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:cd03252 92 I--RDN-IALADPGMSMErVIEAAKLAGAHDFISELPEG--YDTIVGEQG--AGLSGGQRQRIAIARALIHNPRILIFDE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSqKGKTVILTIHQPSSelFELFDKILLMAEGRVAFLGTPGEAVD 321
Cdd:cd03252 165 ATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
100-319 |
1.05e-22 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 97.92 E-value: 1.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRlLNGHPID---AKEMQARCAyV--QQD 172
Cdd:PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSgeLSPDSG------EVR-LNGRPLAdwsPAELARRRA-VlpQHS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 DL-FigSLTAREHLifqAMVRMPRHTTKKQKIQRVDQVIQ--DLSlgkcqntliGVPGR-VKGLSGGERKRLAFA----- 243
Cdd:PRK13548 86 SLsF--PFTVEEVV---AMGRAPHGLSRAEDDALVAAALAqvDLA---------HLAGRdYPQLSGGEQQRVQLArvlaq 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 244 -SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKL-SQKGKTVILTIHQPSseLFELF-DKILLMAEGRVAFLGTPGEA 319
Cdd:PRK13548 152 lWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLaHERGLAVIVVLHDLN--LAARYaDRIVLLHQGRLVADGTPAEV 228
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
103-310 |
1.12e-22 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 95.36 E-value: 1.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRLlNGHPI---DAKEMQARCAYVQQDD-LFI 176
Cdd:cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILglLRPTSG------RVRL-DGADIsqwDPNELGDHVGYLPQDDeLFS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTarehlifqamvrmprhttkkqkiqrvdqviqdlslgkcQNTLigvpgrvkglSGGERKRLAFASEALTDPPLLICD 256
Cdd:cd03246 90 GSIA--------------------------------------ENIL----------SGGQRQRLGLARALYGNPRILVLD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPssELFELFDKILLMAEGRV 310
Cdd:cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP--ETLASADRILVLEDGRV 173
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
114-314 |
1.86e-22 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 96.02 E-value: 1.86e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPIDAKEMQAR--CAYVQQDDLFigsltarEHL-IFQ-- 188
Cdd:cd03298 24 GEITAIVGPSGSGKSTLLNLIA-----GFETPQSGRVLINGVDVTAAPPADRpvSMLFQENNLF-------AHLtVEQnv 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 189 AMVRMPRHTTKKQKIQRVDQVIQDLSLgkcQNTLIGVPGRvkgLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAH 268
Cdd:cd03298 92 GLGLSPGLKLTAEDRQAIEVALARVGL---AGLEKRLPGE---LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 618014015 269 SVVQVLKKL-SQKGKTVILTIHQPsSELFELFDKILLMAEGRVAFLG 314
Cdd:cd03298 166 EMLDLVLDLhAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
99-311 |
2.35e-22 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 96.00 E-value: 2.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGvQISPSTVR-LLNGHPIdaKEMQARCAYVQQDDLFIG 177
Cdd:cd03293 15 GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA-----G-LERPTSGEvLVDGEPV--TGPGPDRGYVFQQDALLP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHLIFQA-MVRMPrhttKKQKIQRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFASEALTDPPLLICD 256
Cdd:cd03293 87 WLTVLDNVALGLeLQGVP----KAEARERAEELLELVGLSGFENAY---PHQ---LSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAE--GRVA 311
Cdd:cd03293 157 EPFSALDALTREQLQEELLDIWREtGKTVLLVTHD-IDEAVFLADRVVVLSArpGRIV 213
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
104-318 |
2.65e-22 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 96.65 E-value: 2.65e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRlLNGHPIDAKEMQARCAY-----VQQDDLFi 176
Cdd:COG0411 20 VDDVSLEVERGEIVGLIGPNGAGKTTLFNLITgfYRPTSG------RIL-FDGRDITGLPPHRIARLgiartFQNPRLF- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHL-----------IFQAMVRMPRHTTKKQKI-QRVDQVIQDLSLGKCQNTLigvpgrVKGLSGGERKRLAFAS 244
Cdd:COG0411 92 PELTVLENVlvaaharlgrgLLAALLRLPRARREEREArERAEELLERVGLADRADEP------AGNLSYGQQRRLEIAR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 245 eAL-TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTihqpssE-----LFELFDKILLMAEGRVAFLGTPG 317
Cdd:COG0411 166 -ALaTEPKLLLLDEPAAGLNPEETEELAELIRRLRDErGITILLI------EhdmdlVMGLADRIVVLDFGRVIAEGTPA 238
|
.
gi 618014015 318 E 318
Cdd:COG0411 239 E 239
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
102-318 |
5.18e-22 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 95.34 E-value: 5.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 102 HLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAF--RSSKG-VQISPSTVRLLNGhpIDAKEMQARCAYV-QQDDLFiG 177
Cdd:cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGleRPTSGsVLVDGTDLTLLSG--KELRKARRRIGMIfQHFNLL-S 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHlifqamVRMP---RHTTKKQKIQRVDQVIQdlslgkcqntLIGVPGRVKG----LSGGERKRLAFASEALTDP 250
Cdd:cd03258 96 SRTVFEN------VALPleiAGVPKAEIEERVLELLE----------LVGLEDKADAypaqLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 251 PLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPSSeLFELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEEGTVEE 227
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
101-310 |
6.17e-22 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 94.52 E-value: 6.17e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRsskgVQISPSTVRL----LNGHPIDAKEMQARCAYV-QQDDLF 175
Cdd:cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL----EEPDSGTIIIdglkLTDDKKNINELRQKVGMVfQQFNLF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 iGSLTAREHLIFQAM-VR-MPRHTTKKQKIQRVDQViqdlslgkcqntliGVPGRVKG----LSGGERKRLAFASEALTD 249
Cdd:cd03262 89 -PHLTVLENITLAPIkVKgMSKAEAEERALELLEKV--------------GLADKADAypaqLSGGQQQRVAIARALAMN 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 250 PPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSselF--ELFDKILLMAEGRV 310
Cdd:cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG---FarEVADRVIFMDDGRI 213
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
85-323 |
7.96e-22 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 95.15 E-value: 7.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 85 RVKGVLCNERHIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKG-VQISPSTVRLLnghpidakE 161
Cdd:COG1134 23 SLKELLLRRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAgiLEPTSGrVEVNGRVSALL--------E 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 162 MQARcayvqqddlFIGSLTAREHLIFQAMVR-MPRHTTKKqkiqRVDQVIqDLS-LGKcqntLIGVPgrVKGLSGGERKR 239
Cdd:COG1134 95 LGAG---------FHPELTGRENIYLNGRLLgLSRKEIDE----KFDEIV-EFAeLGD----FIDQP--VKTYSSGMRAR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 240 LAFASEALTDPPLLICDEPTS-GLDSFMAHSvVQVLKKLSQKGKTVILTIHQPSSeLFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG1134 155 LAFAVATAVDPDILLVDEVLAvGDAAFQKKC-LARIRELRESGRTVIFVSHSMGA-VRRLCDRAIWLEKGRLVMDGDPEE 232
|
....*
gi 618014015 319 AVDFF 323
Cdd:COG1134 233 VIAAY 237
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
100-328 |
8.48e-22 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 95.06 E-value: 8.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIafrsskGVQISPSTVRLL-NGHPI---DAKEMQARCAYV-QQDDL 174
Cdd:cd03295 13 GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI------NRLIEPTSGEIFiDGEDIreqDPVELRRKIGYViQQIGL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FiGSLTAREHLifqAMVRMPRHTTKKQKIQRVDQVIQDLSLGkcqntligvPGRVKG-----LSGGERKRLAFASEALTD 249
Cdd:cd03295 87 F-PHMTVEENI---ALVPKLLKWPKEKIRERADELLALVGLD---------PAEFADrypheLSGGQQQRVGVARALAAD 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 250 PPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE-----AVDFF 323
Cdd:cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQElGKTIVFVTHD-IDEAFRLADRIAIMKNGEIVQVGTPDEilrspANDFV 232
|
....*.
gi 618014015 324 -SYIGA 328
Cdd:cd03295 233 aEFVGA 238
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
100-263 |
2.66e-21 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 92.54 E-value: 2.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGVQISPStvRLLNGHPIDAKEMQAR-CAYVQQDDLFIGS 178
Cdd:COG4136 13 GRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFSASGE--VLLNGRRLTALPAEQRrIGILFQDDLLFPH 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTAREHLIFQamvrMPRHTTKKQKIQRVDQVIQDLSLGkcqntliGVPGR-VKGLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:COG4136 91 LSVGENLAFA----LPPTIGRAQRRARVEQALEEAGLA-------GFADRdPATLSGGQRARVALLRALLAEPRALLLDE 159
|
....*.
gi 618014015 258 PTSGLD 263
Cdd:COG4136 160 PFSKLD 165
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
104-318 |
3.09e-21 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 92.81 E-value: 3.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKGvQIspstvrLLNGHP---IDAKEMQA---RCAYVQQDDLF 175
Cdd:COG2884 18 LSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLygEERPTSG-QV------LVNGQDlsrLKRREIPYlrrRIGVVFQDFRL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 IGSLTAREHLIFqAM--VRMPRHTTKKqkiqRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFASEALTDPPLL 253
Cdd:COG2884 91 LPDRTVYENVAL-PLrvTGKSRKEIRR----RVREVLDLVGLSDKAKAL---PHE---LSGGEQQRVAIARALVNRPELL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPssELFELFDK-ILLMAEGRVAFLGTPGE 318
Cdd:COG2884 160 LADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDL--ELVDRMPKrVLELEDGRLVRDEARGV 223
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
104-315 |
5.10e-21 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 92.29 E-value: 5.10e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPI---DAKEMQARCAYVQQDdLFIGS 178
Cdd:cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPrfYDVDSG-RI------LIDGHDVrdyTLASLRRQIGLVSQD-VFLFN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTAREHLIF------QAMVRmprhttKKQKIQRVDQVIQDLSLGkcQNTLIGVPGrVKgLSGGERKRLAFASEALTDPPL 252
Cdd:cd03251 90 DTVAENIAYgrpgatREEVE------EAARAANAHEFIMELPEG--YDTVIGERG-VK-LSGGQRQRIAIARALLKDPPI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 253 LICDEPTSGLDSFMAHSVVQVLKKLsQKGKTVILTIHQPSSelFELFDKILLMAEGRVAFLGT 315
Cdd:cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLST--IENADRIVVLEDGKIVERGT 219
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
104-318 |
5.84e-21 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 93.99 E-value: 5.84e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRLlNGHPI--DAKEMQARCAYVQQDDLFIGSL 179
Cdd:TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTtlLRPTSG------TARV-AGYDVvrEPRKVRRSIGIVPQYASVDEDL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHL-IFQAMVRMPrhttKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEP 258
Cdd:TIGR01188 82 TGRENLeMMGRLYGLP----KDEAEERAEELLELFELGEAADR------PVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 259 TSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHY-MEEADKLCDRIAIIDHGRIIAEGTPEE 210
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
101-315 |
6.14e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 93.63 E-value: 6.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLlnaiaFRSSKGVqISPS--TVRLlNGHPIDAKEMQArcayvqqddlfIG- 177
Cdd:COG4152 14 KTAVDDVSFTVPKGEIFGLLGPNGAGKTTT-----IRIILGI-LAPDsgEVLW-DGEPLDPEDRRR-----------IGy 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 ---------SLTAREHLIFQAMVR-MPRHTTKKqkiqRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEAL 247
Cdd:COG4152 76 lpeerglypKMKVGEQLVYLARLKgLSKAEAKR----RADEWLERLGLGDRANK------KVEELSKGNQQKVQLIAALL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 248 TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQ-PSSElfELFDKILLMAEGRVAFLGT 315
Cdd:COG4152 146 HDPELLILDEPFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQmELVE--ELCDRIVIINKGRKVLSGS 212
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
100-310 |
8.25e-21 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 91.80 E-value: 8.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPI---DAKEMQARCAYVQqddlfi 176
Cdd:cd03257 17 SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAIL-----GLLKPTSGSIIFDGKDLlklSRRLRKIRRKEIQ------ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 gsltarehLIFQ-AMVRM-PRHTTKKQ-----KIQRVDQVIQDLSLGKCQN-TLIGVPGRVKG-----LSGGERKRLAFA 243
Cdd:cd03257 86 --------MVFQdPMSSLnPRMTIGEQiaeplRIHGKLSKKEARKEAVLLLlVGVGLPEEVLNrypheLSGGQRQRVAIA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 244 SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKL-SQKGKTVILTIHQPSSeLFELFDKILLMAEGRV 310
Cdd:cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLqEELGLTLLFITHDLGV-VAKIADRVAVMYAGKI 224
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
113-318 |
2.51e-20 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 93.25 E-value: 2.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PG-ELLAVMGSSGAGKTTLLNAIA-----------------FRSSKGVQISPStvrllnghpidakemQARCAYVQQDDL 174
Cdd:TIGR02142 21 PGqGVTAIFGRSGSGKTTLIRLIAgltrpdegeivlngrtlFDSRKGIFLPPE---------------KRRIGYVFQEAR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREHLIFqAMVRmprhTTKKQKIQRVDQVIQDLSLGkcqNTLIGVPGRvkgLSGGERKRLAFASEALTDPPLLI 254
Cdd:TIGR02142 86 LFPHLSVRGNLRY-GMKR----ARPSERRISFERVIELLGIG---HLLGRLPGR---LSGGEKQRVAIGRALLSSPRLLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAE 218
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
102-318 |
3.16e-20 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 90.04 E-value: 3.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 102 HLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskG-VQISPSTVRLlNGHPIDAKEMQARC----AYVQQD-DLF 175
Cdd:COG0410 17 HVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAIS-----GlLPPRSGSIRF-DGEDITGLPPHRIArlgiGYVPEGrRIF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 iGSLTAREHLIFQAMVRMPRHTTKkqkiQRVDQVIqDL--SLGKCQNTLIGVpgrvkgLSGGERKRLAFASeAL-TDPPL 252
Cdd:COG0410 91 -PSLTVEENLLLGAYARRDRAEVR----ADLERVY-ELfpRLKERRRQRAGT------LSGGEQQMLAIGR-ALmSRPKL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 253 LICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILtIHQPSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG0410 158 LLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILL-VEQNARFALEIADRAYVLERGRIVLEGTAAE 222
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
97-314 |
4.67e-20 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 88.14 E-value: 4.67e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 97 PAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKGvQIspstvrLLNGHPIDAKEMQARCAyvqqddl 174
Cdd:cd03247 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLtgDLKPQQG-EI------TLDGVPVSDLEKALSSL------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 fIGSLTAREHLiFQAMVRmprhttkkqkiqrvdqviqdlslgkcQNtlIGVPgrvkgLSGGERKRLAFASEALTDPPLLI 254
Cdd:cd03247 77 -ISVLNQRPYL-FDTTLR--------------------------NN--LGRR-----FSGGERQRLALARILLQDAPIVL 121
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSqKGKTVILTIHQPSSelFELFDKILLMAEGRVAFLG 314
Cdd:cd03247 122 LDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG--IEHMDKILFLENGKIIMQG 178
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
104-339 |
4.68e-20 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 89.70 E-value: 4.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPSTVR-LLNGHPI-DAKEMQARCAYVQQDDLFIGSLTA 181
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIA-----GF-IKPDSGKiLLNGKDItNLPPEKRDISYVPQNYALFPHMTV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 182 REHLIFQamVRMpRHTTKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPTSG 261
Cdd:cd03299 89 YKNIAYG--LKK-RKVDKKEIERKVLEIAEMLGIDHLLNR------KPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 262 LDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGEAvdFFSyigaqcPNNYNPADF 339
Cdd:cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV--FKK------PKNEFVAEF 229
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
100-311 |
2.78e-19 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 87.84 E-value: 2.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRlLNGHPIDAKemQARCAYVQQDDlfig 177
Cdd:COG1116 23 GVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAglEKPTSG------EVL-VDGKPVTGP--GPDRGVVFQEP---- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SL----TAREHlifqamVRMP---RHTTKKQKIQRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFAsEAL-TD 249
Cdd:COG1116 90 ALlpwlTVLDN------VALGlelRGVPKAERRERARELLELVGLAGFEDAY---PHQ---LSGGMRQRVAIA-RALaND 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 250 PPLLICDEPTSGLDSFMAHSVVQVLKKL-SQKGKTVILTIHQPSSELFeLFDKILLMAE--GRVA 311
Cdd:COG1116 157 PEVLLMDEPFGALDALTRERLQDELLRLwQETGKTVLFVTHDVDEAVF-LADRVVVLSArpGRIV 220
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
104-318 |
4.38e-19 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 89.39 E-value: 4.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-F-RSSKGvQIspstvrLLNGHPIDAKEMQAR-CAYVQQDD-LFiGSL 179
Cdd:COG3842 21 LDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAgFeTPDSG-RI------LLDGRDVTGLPPEKRnVGMVFQDYaLF-PHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREH----LifqamvRMpRHTTKKQKIQRVDQVIQdlslgkcqntLIGVPG----RVKGLSGGERKRLAFAsEAL-TDP 250
Cdd:COG3842 93 TVAENvafgL------RM-RGVPKAEIRARVAELLE----------LVGLEGladrYPHQLSGGQQQRVALA-RALaPEP 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 251 PLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG3842 155 RVLLLDEPLSALDAKLREEMREELRRLQRElGITFIYVTHDQ-EEALALADRIAVMNDGRIEQVGTPEE 222
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
103-309 |
7.60e-19 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 85.21 E-value: 7.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskgvqispSTVRLLNGHpidaKEMQARCAYVQQDDlFIGSLTAR 182
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALL-----------GELEKLSGS----VSVPGSIAYVSQEP-WIQNGTIR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 183 EHLIFqamvrmprhtTKKQKIQRVDQVI------QDLS-LGKCQNTLIGvpgrVKG--LSGGERKRLAFASEALTDPPLL 253
Cdd:cd03250 84 ENILF----------GKPFDEERYEKVIkacalePDLEiLPDGDLTEIG----EKGinLSGGQKQRISLARAVYSDADIY 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 254 ICDEPTSGLDSFMAHSVVQ-VLKKLSQKGKTVILTIHQPssELFELFDKILLMAEGR 309
Cdd:cd03250 150 LLDDPLSAVDAHVGRHIFEnCILGLLLNNKTRILVTHQL--QLLPHADQIVVLDNGR 204
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
100-310 |
9.07e-19 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 84.41 E-value: 9.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FRSSKGVQIspstvrLLNGHPIDAKE----MQARCAYVQQDdl 174
Cdd:cd03215 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFgLRPPASGEI------TLDGKPVTRRSprdaIRAGIAYVPED-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 figsltarehlifqamvrmpRHTtkkqkiqrvDQVIQDLSLGkcQNTLIGVpgrvkGLSGGERKRLAFASEALTDPPLLI 254
Cdd:cd03215 84 --------------------RKR---------EGLVLDLSVA--ENIALSS-----LLSGGNQQKVVLARWLARDPRVLI 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTihqpSSELFELF---DKILLMAEGRV 310
Cdd:cd03215 128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI----SSELDELLglcDRILVMYEGRI 182
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
103-318 |
1.08e-18 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 88.75 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIafrssKGVqISPST-VRLLNGHPI---DAKEMQARCAYVQQDDLFIGS 178
Cdd:PRK09536 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAI-----NGT-LTPTAgTVLVAGDDVealSARAASRRVASVPQDTSLSFE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTARehlifqAMVRMPR--HTTKKQKIQRVDQVIQDLSLGKCQNTLIgVPGRVKGLSGGERKRLAFASEALTDPPLLICD 256
Cdd:PRK09536 92 FDVR------QVVEMGRtpHRSRFDTWTETDRAAVERAMERTGVAQF-ADRPVTSLSGGERQRVLLARALAQATPVLLLD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHqpSSELFELF-DKILLMAEGRVAFLGTPGE 318
Cdd:PRK09536 165 EPTASLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLAARYcDELVLLADGRVRAAGPPAD 225
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
113-324 |
1.10e-18 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 85.58 E-value: 1.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIA-FRSSKGVQIspstvrLLNGHPIDAKEMQARCAYV--QQDDLFiGSLTAREHLifqA 189
Cdd:COG3840 24 AGERVAILGPSGAGKSTLLNLIAgFLPPDSGRI------LWNGQDLTALPPAERPVSMlfQENNLF-PHLTVAQNI---G 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 190 MVRMPR-HTTKKQKiQRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAH 268
Cdd:COG3840 94 LGLRPGlKLTAEQR-AQVEQALERVGLAGLLDRL---PGQ---LSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQ 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 269 SVVQVLKKLSQK-GKTVILTIHQPsSELFELFDKILLMAEGRVAFlgtPGEAVDFFS 324
Cdd:COG3840 167 EMLDLVDELCRErGLTVLMVTHDP-EDAARIADRVLLVADGRIAA---DGPTAALLD 219
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
100-320 |
1.37e-18 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 85.40 E-value: 1.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTllnaiAFRSSKGVqISPSTVR-LLNGHPIDAKEMQARC----AYVQQDDL 174
Cdd:TIGR04406 13 KRKVVNDVSLSVKSGEIVGLLGPNGAGKTT-----SFYMIVGL-VRPDAGKiLIDGQDITHLPMHERArlgiGYLPQEAS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREHLIfqAMVRMPRHTTKKQKIQRVDQVIQDLSLGKCQNTLIGvpgrvkGLSGGERKRLAFASEALTDPPLLI 254
Cdd:TIGR04406 87 IFRKLTVEENIM--AVLEIRKDLDRAEREERLEALLEEFQISHLRDNKAM------SLSGGERRRVEIARALATNPKFIL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGEAV 320
Cdd:TIGR04406 159 LDEPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHN-VRETLDICDRAYIISDGKVLAEGTPAEIV 223
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
102-310 |
1.82e-18 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 84.79 E-value: 1.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 102 HLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRLlNGHPIDAKEMQARCA-------YVQQD 172
Cdd:COG4181 26 TILKGISLEVEAGESVAIVGASGSGKSTLLGLLAglDRPTSG------TVRL-AGQDLFALDEDARARlrarhvgFVFQS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 DLFIGSLTAREHlifqamVRMP----RHTTKKQKIQRV-DQViqdlslgkcqntliGVPGRV----KGLSGGERKRLAFA 243
Cdd:COG4181 99 FQLLPTLTALEN------VMLPlelaGRRDARARARALlERV--------------GLGHRLdhypAQLSGGEQQRVALA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 244 SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKL-SQKGKTVILTIHQPssELFELFDKILLMAEGRV 310
Cdd:COG4181 159 RAFATEPAILFADEPTGNLDAATGEQIIDLLFELnRERGTTLVLVTHDP--ALAARCDRVLRLRAGRL 224
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
113-336 |
2.57e-18 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 86.40 E-value: 2.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLnaiafRSSKGVQISPSTVRLLNGHPID--AKEMQARCAYVQQDDLFIGSLTAREHL-IFQA 189
Cdd:PRK13537 32 RGECFGLLGPNGAGKTTTL-----RMLLGLTHPDAGSISLCGEPVPsrARHARQRVGVVPQFDNLDPDFTVRENLlVFGR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 190 MVRMPRHTTKKqkiqRVDQViqdLSLGKCQNTligVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHS 269
Cdd:PRK13537 107 YFGLSAAAARA----LVPPL---LEFAKLENK---ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 270 VVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGEAVDffSYIGAQCPNNYNP 336
Cdd:PRK13537 177 MWERLRSLLARGKTILLTTHF-MEEAERLCDRLCVIEEGRKIAEGAPHALIE--SEIGCDVIEIYGP 240
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
104-328 |
3.42e-18 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 84.31 E-value: 3.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQiSPSTVR-LLNGHPIDAKEMQAR-CAYVQQDDLFIGSLTA 181
Cdd:cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIA-----GLE-RPDSGTiLFGGEDATDVPVQERnVGFVFQHYALFRHMTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 182 REHLIFQAMVRMPRHTTKKQKI-QRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFASEALTDPPLLICDEPTS 260
Cdd:cd03296 92 FDNVAFGLRVKPRSERPPEAEIrAKVHELLKLVQLDWLADRY---PAQ---LSGGQRQRVALARALAVEPKVLLLDEPFG 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 261 GLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGEAVD------FFSYIGA 328
Cdd:cd03296 166 ALDAKVRKELRRWLRRLHDElHVTTVFVTHD-QEEALEVADRVVVMNKGRIEQVGTPDEVYDhpaspfVYSFLGE 239
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
101-311 |
3.53e-18 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 83.35 E-value: 3.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA----FRSSKGvQIspstvrLLNGHPIDAKEMQARcayvqqddlfi 176
Cdd:cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMghpkYEVTEG-EI------LFKGEDITDLPPEER----------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 gsltARE--HLIFQAMVRMPRHTTKKqkiqrvdqVIQDLSlgkcqntligvpgrvKGLSGGERKRLAFASEALTDPPLLI 254
Cdd:cd03217 75 ----ARLgiFLAFQYPPEIPGVKNAD--------FLRYVN---------------EGFSGGEKKRNEILQLLLLEPDLAI 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPssELFELF--DKILLMAEGRVA 311
Cdd:cd03217 128 LDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ--RLLDYIkpDRVHVLYDGRIV 184
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
85-314 |
4.56e-18 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 83.74 E-value: 4.56e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 85 RVKGVLCNERHIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKG-VQISPSTVRLLnghpidakE 161
Cdd:cd03220 19 SLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAgiYPPDSGtVTVRGRVSSLL--------G 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 162 MQARcayvqqddlFIGSLTAREHLIFQAMVrmprHTTKKQKIQRVDQVIQDLS-LGKCQNTligvpgRVKGLSGGERKRL 240
Cdd:cd03220 91 LGGG---------FNPELTGRENIYLNGRL----LGLSRKEIDEKIDEIIEFSeLGDFIDL------PVKTYSSGMKARL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 241 AFASEALTDPPLLICDEPTSGLD-SFMAHSvVQVLKKLSQKGKTVILTIHQPSSeLFELFDKILLMAEGRVAFLG 314
Cdd:cd03220 152 AFAIATALEPDILLIDEVLAVGDaAFQEKC-QRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLEKGKIRFDG 224
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
94-291 |
4.62e-18 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 87.80 E-value: 4.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 94 RHIPAPRkhLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FRSSKGVQIspstvrLLNGHPI---DAKEMQARCAYV 169
Cdd:TIGR02868 343 GYPGAPP--VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAgLLDPLQGEV------TLDGVPVsslDQDEVRRRVSVC 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 170 QQD-DLFigSLTAREHLifqamvRMPRHTTKKQKIQRV-DQV-----IQDLSLGkcQNTLIGVPGRVkgLSGGERKRLAF 242
Cdd:TIGR02868 415 AQDaHLF--DTTVRENL------RLARPDATDEELWAAlERVgladwLRALPDG--LDTVLGEGGAR--LSGGERQRLAL 482
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 618014015 243 ASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQkGKTVILTIHQP 291
Cdd:TIGR02868 483 ARALLADAPILLLDEPTEHLDAETADELLEDLLAALS-GRTVVLITHHL 530
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
97-311 |
6.54e-18 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 84.14 E-value: 6.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 97 PAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FrsskgvqISPSTVR-LLNGHPIDAKEmqARCAYVQQDDL 174
Cdd:COG4525 16 GGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAgF-------LAPSSGEiTLDGVPVTGPG--ADRGVVFQKDA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREH----LIFQAMVRMPRHttkkqkiQRVDQVIQdlslgkcqntLIGVPG----RVKGLSGGERKRLAFAsEA 246
Cdd:COG4525 87 LLPWLNVLDNvafgLRLRGVPKAERR-------ARAEELLA----------LVGLADfarrRIWQLSGGMRQRVGIA-RA 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 247 LT-DPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPSSELFeLFDKILLMA--EGRVA 311
Cdd:COG4525 149 LAaDPRFLLMDEPFGALDALTREQMQELLLDVWQRtGKGVFLITHSVEEALF-LATRLVVMSpgPGRIV 216
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
114-297 |
7.94e-18 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 82.84 E-value: 7.94e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAFRsskgvqISPS--TVRLlNGHPIdAKEMQARCAY-------VQQDDLFIGSLTAREH 184
Cdd:cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE------ELPTsgTIRV-NGQDV-SDLRGRAIPYlrrkigvVFQDFRLLPDRNVYEN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 185 LIFqAM--VRMPRHTTKKqkiqRVDQVIQDLSLGKCQNTLigvpgrVKGLSGGERKRLAFASEALTDPPLLICDEPTSGL 262
Cdd:cd03292 99 VAF-ALevTGVPPREIRK----RVPAALELVGLSHKHRAL------PAELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
|
170 180 190
....*....|....*....|....*....|....*
gi 618014015 263 DSFMAHSVVQVLKKLSQKGKTVILTIHqpSSELFE 297
Cdd:cd03292 168 DPDTTWEIMNLLKKINKAGTTVVVATH--AKELVD 200
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
107-329 |
8.29e-18 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 85.27 E-value: 8.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 107 VSGVAY---PGELLAVMGSSGAGKTTLLNAIAFRSSKGVqispSTVRLLnGHPI--DAKEMQARCAYVQQDDLFIGSLTA 181
Cdd:PRK13536 57 VNGLSFtvaSGECFGLLGPNGAGKSTIARMILGMTSPDA----GKITVL-GVPVpaRARLARARIGVVPQFDNLDLEFTV 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 182 REHLI-FQAMVRMprhttkkqKIQRVDQVIQDL-SLGKCQNTligVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPT 259
Cdd:PRK13536 132 RENLLvFGRYFGM--------STREIEAVIPSLlEFARLESK---ADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 260 SGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGEAVDffSYIGAQ 329
Cdd:PRK13536 201 TGLDPHARHLIWERLRSLLARGKTILLTTHF-MEEAERLCDRLCVLEAGRKIAEGRPHALID--EHIGCQ 267
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
104-311 |
9.83e-18 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 82.40 E-value: 9.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPIdAKEMQARCAYVQQDDL-FIGSLtar 182
Cdd:TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLG-----GLDNPTSGEVLFNGQSL-SKLSSNERAKLRNKKLgFIYQF--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 183 EHLI--FQAM--VRMP---RHTTKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLIC 255
Cdd:TIGR02211 92 HHLLpdFTALenVAMPlliGKKSVKEAKERAYEMLEKVGLEHRINH------RPSELSGGERQRVAIARALVNQPSLVLA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 256 DEPTSGLDSFMAHSVVQVLKKL-SQKGKTVILTIHQPssELFELFDKILLMAEGRVA 311
Cdd:TIGR02211 166 DEPTGNLDNNNAKIIFDLMLELnRELNTSFLVVTHDL--ELAKKLDRVLEMKDGQLF 220
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
102-315 |
1.04e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 86.80 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 102 HLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKGvQIspstvrLLNGHPIDA-KEMQAR---CAYVQQDDLF 175
Cdd:PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLtrAWDPQQG-EI------LLNGQPIADySEAALRqaiSVVSQRVHLF 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 IGSLtaREHLIFQAmvrmPRHTTKK--QKIQRV--DQVIQDlslGKCQNTLIGVPGRvkGLSGGERKRLAFASEALTDPP 251
Cdd:PRK11160 427 SATL--RDNLLLAA----PNASDEAliEVLQQVglEKLLED---DKGLNAWLGEGGR--QLSGGEQRRLGIARALLHDAP 495
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 252 LLICDEPTSGLDSFMAHSVVQVLKKLSQkGKTVILTIHQpsseLFEL--FDKILLMAEGRVAFLGT 315
Cdd:PRK11160 496 LLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHR----LTGLeqFDRICVMDNGQIIEQGT 556
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
104-318 |
1.08e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 83.59 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTL---LNAIaFRSSKGVQispstvrLLNGHPI--DAK---EMQARCAYVQQ---D 172
Cdd:PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLflhFNGI-LKPTSGEV-------LIKGEPIkyDKKsllEVRKTVGIVFQnpdD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 DLFigSLTAREHLIFQAM-VRMPRHTTKKqkiqRVDQVIQDLSLGKCQNTligVPGRvkgLSGGERKRLAFASEALTDPP 251
Cdd:PRK13639 90 QLF--APTVEEDVAFGPLnLGLSKEEVEK----RVKEALKAVGMEGFENK---PPHH---LSGGQKKRVAIAGILAMKPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 252 LLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpsSELFELF-DKILLMAEGRVAFLGTPGE 318
Cdd:PRK13639 158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD--VDLVPVYaDKVYVMSDGKIIKEGTPKE 223
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
104-341 |
1.19e-17 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 83.46 E-value: 1.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIafrsSKGVQISPSTVrLLNGHPI---DAKEMQA----RCAYVQQDDLFI 176
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCI----NRLIEPTSGKV-LIDGQDIaamSRKELRElrrkKISMVFQSFALL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHLIFQAMVRmprHTTKKQKIQRVDQVIQDLSLGKCQNTLIGvpgrvkGLSGGERKRLAFASEALTDPPLLICD 256
Cdd:cd03294 115 PHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD------ELSGGMQQRVGLARALAVDPDILLMD 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPsSELFELFDKILLMAEGRVAFLGTPGEAVDffsyigaqcpnnyN 335
Cdd:cd03294 186 EAFSALDPLIRREMQDELLRLQAElQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEILT-------------N 251
|
....*.
gi 618014015 336 PADFYV 341
Cdd:cd03294 252 PANDYV 257
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
103-291 |
1.29e-17 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 81.84 E-value: 1.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVRlLNGHPIDAKEMQARCAYVQQDDLFIGSLT 180
Cdd:PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAglLPPAAG------TIK-LDGGDIDDPDVAEACHYLGHRNAMKPALT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 181 AREHLIFQAMVRmprhttkKQKIQRVDQVIQDLSLGKcqntLIGVPGRVkgLSGGERKRLAFASEALTDPPLLICDEPTS 260
Cdd:PRK13539 90 VAENLEFWAAFL-------GGEELDIAAALEAVGLAP----LAHLPFGY--LSAGQKRRVALARLLVSNRPIWILDEPTA 156
|
170 180 190
....*....|....*....|....*....|....*
gi 618014015 261 GLDSfmahSVVQVLKKLSQ----KGKTVILTIHQP 291
Cdd:PRK13539 157 ALDA----AAVALFAELIRahlaQGGIVIAATHIP 187
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
100-311 |
1.38e-17 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 86.23 E-value: 1.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKGvqispsTVRlLNG------HPIDAkeMQARCAYVQQ 171
Cdd:COG1129 264 VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALfgADPADSG------EIR-LDGkpvrirSPRDA--IRAGIAYVPE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 DDL---FIGSLTAREHLIFQAMVRMPRH--TTKKQKIQRVDQVIQDLSLgKCQNtlIGVPgrVKGLSGGERKRLAFASEA 246
Cdd:COG1129 335 DRKgegLVLDLSIRENITLASLDRLSRGglLDRRRERALAEEYIKRLRI-KTPS--PEQP--VGNLSGGNQQKVVLAKWL 409
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 247 LTDPPLLICDEPTSGLDsfmahsvV-------QVLKKLSQKGKTVILTihqpSSELFELF---DKILLMAEGRVA 311
Cdd:COG1129 410 ATDPKVLILDEPTRGID-------VgakaeiyRLIRELAAEGKAVIVI----SSELPELLglsDRILVMREGRIV 473
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
104-314 |
3.67e-17 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 80.97 E-value: 3.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPIDAKEMQaRCAYVQQDDLFiGSLTARE 183
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLIS-----GLAQPTSGGVILEGKQITEPGPD-RMVVFQNYSLL-PWLTVRE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 184 HlIFQAMVRMPRHTTKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLD 263
Cdd:TIGR01184 74 N-IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 618014015 264 SFMAHSVVQVLKKLSQK-GKTVILTIHQPSSELFeLFDKILLMAEGRVAFLG 314
Cdd:TIGR01184 147 ALTRGNLQEELMQIWEEhRVTVLMVTHDVDEALL-LSDRVVMLTNGPAANIG 197
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
101-310 |
3.91e-17 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 81.07 E-value: 3.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfRSSKGVQISPST-VRLLNGHPI-----DAKEMQARCAYV-QQDD 173
Cdd:cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLN-RLNDLIPGAPDEgEVLLDGKDIydldvDVLELRRRVGMVfQKPN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSltarehlIFQAMVRMPRHTTKKQKIQRVDQVIQDLslgkcqnTLIGVPGRVK------GLSGGERKRLAFASEAL 247
Cdd:cd03260 92 PFPGS-------IYDNVAYGLRLHGIKLKEELDERVEEAL-------RKAALWDEVKdrlhalGLSGGQQQRLCLARALA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 248 TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILT--IHQPSSelfeLFDKILLMAEGRV 310
Cdd:cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVThnMQQAAR----VADRTAFLLNGRL 218
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
95-318 |
4.48e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 81.77 E-value: 4.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 95 HIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLlnaiaFRSSKGVQISPSTVRLLNGHPIDAKEMQARCAYV----Q 170
Cdd:PRK13652 11 YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTL-----FRHFNGILKPTSGSVLIRGEPITKENIREVRKFVglvfQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 171 QDDLFIGSLTAREHLIFQAM-VRMPRHTTKkqkiQRVDQVIQDLSLgkcQNTLIGVPGRvkgLSGGERKRLAFASEALTD 249
Cdd:PRK13652 86 NPDDQIFSPTVEQDIAFGPInLGLDEETVA----HRVSSALHMLGL---EELRDRVPHH---LSGGEKKRVAIAGVIAME 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 250 PPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK13652 156 PQVLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQ-LDLVPEMADYIYVMDKGRIVAYGTVEE 224
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
103-288 |
6.94e-17 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 80.24 E-value: 6.94e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPIDAKEMQARCAYVQQDDLFIGSLtar 182
Cdd:PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLG-----GLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQF--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 183 EHLI--FQAM--VRMPR---HTTKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLIC 255
Cdd:PRK11629 96 HHLLpdFTALenVAMPLligKKKPAEINSRALEMLAAVGLEHRANH------RPSELSGGERQRVAIARALVNNPRLVLA 169
|
170 180 190
....*....|....*....|....*....|...
gi 618014015 256 DEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTI 288
Cdd:PRK11629 170 DEPTGNLDARNADSIFQLLGELNRLQGTAFLVV 202
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
99-310 |
9.09e-17 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 79.82 E-value: 9.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FRSSKGVQIspstvrLLNGHPI---DAKEMQARCAYVQQDD- 173
Cdd:cd03248 25 PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLEnFYQPQGGQV------LLDGKPIsqyEHKYLHSKVSLVGQEPv 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSLtaREHLIF-QAMVRMPRHTTKKQKiQRVDQVIQDLSLGkcQNTLIGVPGRVkgLSGGERKRLAFASEALTDPPL 252
Cdd:cd03248 99 LFARSL--QDNIAYgLQSCSFECVKEAAQK-AHAHSFISELASG--YDTEVGEKGSQ--LSGGQKQRVAIARALIRNPQV 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 253 LICDEPTSGLDSFMAHSVVQVLKKLSQKgKTVILTIHQPSseLFELFDKILLMAEGRV 310
Cdd:cd03248 172 LILDEATSALDAESEQQVQQALYDWPER-RTVLVIAHRLS--TVERADQILVLDGGRI 226
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
103-290 |
1.22e-16 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 80.40 E-value: 1.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAF--RSSKG-VQISPSTVRLlnghpIDAKEMQARCAYVQQddlfIGSL 179
Cdd:PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFleKPSEGsIVVNGQTINL-----VRDKDGQLKVADKNQ----LRLL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLIFQAMvRMPRHTTKKQKIqrVDQVIQDLSLGKCQN--------TLIGVPGRVKG-----LSGGERKRLAFASEA 246
Cdd:PRK10619 91 RTRLTMVFQHF-NLWSHMTVLENV--MEAPIQVLGLSKQEAreravkylAKVGIDERAQGkypvhLSGGQQQRVSIARAL 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 618014015 247 LTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQ 290
Cdd:PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
113-321 |
1.28e-16 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 79.75 E-value: 1.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIafrsSKGVQISPSTVRL----LNGHPIDAKEMQARCAYV-QQDDLFiGSLTAREHLIF 187
Cdd:PRK09493 26 QGEVVVIIGPSGSGKSTLLRCI----NKLEEITSGDLIVdglkVNDPKVDERLIRQEAGMVfQQFYLF-PHLTALENVMF 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 188 QamvrmPRHTTKKQKIQRVDQViQDLsLGKcqntlIGVPGRV----KGLSGGERKRLAFASEALTDPPLLICDEPTSGLD 263
Cdd:PRK09493 101 G-----PLRVRGASKEEAEKQA-REL-LAK-----VGLAERAhhypSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 264 SFMAHSVVQVLKKLSQKGKTVILTIHQPSselF--ELFDKILLMAEGRVAFLGTPGEAVD 321
Cdd:PRK09493 169 PELRHEVLKVMQDLAEEGMTMVIVTHEIG---FaeKVASRLIFIDKGRIAEDGDPQVLIK 225
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
106-318 |
1.31e-16 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 82.07 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 106 NVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQiSPSTVRL-LNGHPI-DAKEMQA------RCAYVQQDD-LFi 176
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIA-----GLE-RPDSGRIrLGGEVLqDSARGIFlpphrrRIGYVFQEArLF- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHLIFqAMVRMPRHTTKkqkiQRVDQVIQDLSLGkcqnTLIGvpGRVKGLSGGERKRLAFASEALTDPPLLICD 256
Cdd:COG4148 90 PHLSVRGNLLY-GRKRAPRAERR----ISFDEVVELLGIG----HLLD--RRPATLSGGERQRVAIGRALLSSPRLLLMD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLSQKGKTVILTI-HQPsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG4148 159 EPLAALDLARKAEILPYLERLRDELDIPILYVsHSL-DEVARLADHVVLLEQGRVVASGPLAE 220
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
92-316 |
1.74e-16 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 80.26 E-value: 1.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 92 NERHIPAPRKH--LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGVQISPSTVR---LLNGHP---IDAKEMQ 163
Cdd:PRK13547 3 TADHLHVARRHraILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTgdvTLNGEPlaaIDAPRLA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 164 ARCAYVQQDDLFIGSLTAREHLIfqaMVRMPrHTTKKQKIQRVDQVIQDLSLGKC-QNTLIGvpGRVKGLSGGERKRLAF 242
Cdd:PRK13547 83 RLRAVLPQAAQPAFAFSAREIVL---LGRYP-HARRAGALTHRDGEIAWQALALAgATALVG--RDVTTLSGGELARVQF 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 243 A---------SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTI-HQPSSELfELFDKILLMAEGRVAF 312
Cdd:PRK13547 157 ArvlaqlwppHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIvHDPNLAA-RHADRIAMLADGAIVA 235
|
....
gi 618014015 313 LGTP 316
Cdd:PRK13547 236 HGAP 239
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
83-310 |
1.92e-16 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 82.74 E-value: 1.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 83 LNRVKGVLCNE-RHIPAPRKHllkNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKGvQISpstvrlLNGHPIDA 159
Cdd:PRK10762 249 LDKAPGEVRLKvDNLSGPGVN---DVSFTLRKGEILGVSGLMGAGRTELMKVLygALPRTSG-YVT------LDGHEVVT 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 160 KEMQ----ARCAYVQQD----DLFIG-------SLTAREHLIfQAMVRMpRHttkKQKIQRVDQVIQDLSlgkcqntlIG 224
Cdd:PRK10762 319 RSPQdglaNGIVYISEDrkrdGLVLGmsvkenmSLTALRYFS-RAGGSL-KH---ADEQQAVSDFIRLFN--------IK 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 225 VPGR---VKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTihqpSSELFELF-- 299
Cdd:PRK10762 386 TPSMeqaIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILV----SSEMPEVLgm 461
|
250
....*....|..
gi 618014015 300 -DKILLMAEGRV 310
Cdd:PRK10762 462 sDRILVMHEGRI 473
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
103-291 |
2.47e-16 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 78.67 E-value: 2.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQI-SPSTVRLLnGHPIDAKEMQARCA-------YVQQDDL 174
Cdd:PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILA-----GLDDgSSGEVSLV-GQPLHQMDEEARAKlrakhvgFVFQSFM 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREHLIFQAMVRmprHTTKKQKIQRVDQVIQDLSLGKcqnTLIGVPGRvkgLSGGERKRLAFASEALTDPPLLI 254
Cdd:PRK10584 99 LIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGK---RLDHLPAQ---LSGGEQQRVALARAFNGRPDVLF 169
|
170 180 190
....*....|....*....|....*....|....*...
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQP 291
Cdd:PRK10584 170 ADEPTGNLDRQTGDKIADLLFSLNREhGTTLILVTHDL 207
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
101-318 |
3.08e-16 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 78.90 E-value: 3.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfRsskgvQISPSTVRL-LNGHPI---DAKEMQARCAYVQQDDLFI 176
Cdd:PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-R-----LLTPQSGTVfLGDKPIsmlSSRQLARRLALLPQHHLTP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREhLIfqAMVRMP------RHTTKKQkiQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRlAFASEALT-D 249
Cdd:PRK11231 89 EGITVRE-LV--AYGRSPwlslwgRLSAEDN--ARVNQAMEQTRINHLADR------RLTDLSGGQRQR-AFLAMVLAqD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 250 PPLLICDEPTSGLDsfMAHSV--VQVLKKLSQKGKTVILTIH---QPSselfELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK11231 157 TPVVLLDEPTTYLD--INHQVelMRLMRELNTQGKTVVTVLHdlnQAS----RYCDHLVVLANGHVMAQGTPEE 224
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
104-318 |
4.76e-16 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 78.34 E-value: 4.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FRSSKGvQIspstvrLLNGHPIDAKEMQA---RCAYVQQDDLFIGSL 179
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAgLLPGQG-EI------LLNGRPLSDWSAAElarHRAYLSQQQSPPFAM 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLifqaMVRMPRHTTKKQKIQRVDQVIQDLSLGKcqntLIGVPgrVKGLSGGE--RKRLAFA-----SEALTDPPL 252
Cdd:COG4138 85 PVFQYL----ALHQPAGASSEAVEQLLAQLAEALGLED----KLSRP--LTQLSGGEwqRVRLAAVllqvwPTINPEGQL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 253 LICDEPTSGLDsfMAHSVV--QVLKKLSQKGKTVILTIHQPSSELFELfDKILLMAEGRVAFLGTPGE 318
Cdd:COG4138 155 LLLDEPMNSLD--VAQQAAldRLLRELCQQGITVVMSSHDLNHTLRHA-DRVWLLKQGKLVASGETAE 219
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
104-318 |
5.73e-16 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 78.20 E-value: 5.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSgVAYP-GELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVrLLNGHPI---DAKEMQARCAYVQQDDLFIG 177
Cdd:COG4604 17 LDDVS-LTIPkGGITALIGPNGAGKSTLLSMISrlLPPDSG------EV-LVDGLDVattPSRELAKRLAILRQENHINS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHLIFQamvRMP----RHTTKKQKIqrVDQVIQDLSLGKCQNTLIgvpgrvKGLSGGERKRlAFASEAL---TDP 250
Cdd:COG4604 89 RLTVRELVAFG---RFPyskgRLTAEDREI--IDEAIAYLDLEDLADRYL------DELSGGQRQR-AFIAMVLaqdTDY 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 251 PLLicDEPTSGLDsfMAHSV--VQVLKKLS-QKGKTVILTIHqpsselfEL-F-----DKILLMAEGRVAFLGTPGE 318
Cdd:COG4604 157 VLL--DEPLNNLD--MKHSVqmMKLLRRLAdELGKTVVIVLH-------DInFascyaDHIVAMKDGRVVAQGTPEE 222
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
114-291 |
5.83e-16 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 76.76 E-value: 5.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPIDAK--EMQARCAYVQQDDLFIGSLTAREHLIFQAmv 191
Cdd:cd03231 26 GEALQVTGPNGSGKTTLLRILA-----GLSPPLAGRVLLNGGPLDFQrdSIARGLLYLGHAPGIKTTLSVLENLRFWH-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 192 rmPRHTTkkqkiqrvDQVIQDLSlgkcQNTLIGVPGR-VKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSV 270
Cdd:cd03231 99 --ADHSD--------EQVEEALA----RVGLNGFEDRpVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARF 164
|
170 180
....*....|....*....|.
gi 618014015 271 VQVLKKLSQKGKTVILTIHQP 291
Cdd:cd03231 165 AEAMAGHCARGGMVVLTTHQD 185
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
114-315 |
1.01e-15 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 77.75 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAFRSSkGVQISPSTVRLLnGHPI--------DAKEMQARCAYVQQDDLFIGSLTAREHL 185
Cdd:PRK09984 30 GEMVALLGPSGSGKSTLLRHLSGLIT-GDKSAGSHIELL-GRTVqregrlarDIRKSRANTGYIFQQFNLVNRLSVLENV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 186 IFQAMVRMP------RHTTKKQKiQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPT 259
Cdd:PRK09984 108 LIGALGSTPfwrtcfSWFTREQK-QRALQALTRVGMVHFAHQ------RVSTLSGGQQQRVAIARALMQQAKVILADEPI 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 260 SGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPSSELfELFDKILLMAEGRVAFLGT 315
Cdd:PRK09984 181 ASLDPESARIVMDTLRDINQNdGITVVVTLHQVDYAL-RYCERIVALRQGHVFYDGS 236
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
104-289 |
1.08e-15 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 75.92 E-value: 1.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvqispsTVrLLNGHPID-----AKEMQARCAYVQQ---DD 173
Cdd:TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNglLRPQSG------AV-LIDGEPLDysrkgLLERRQRVGLVFQdpdDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSltarehlIFQAMVRMPRHT--TKKQKIQRVDQVIQDLSLGKCQNTLIGVpgrvkgLSGGERKRLAFASEALTDPP 251
Cdd:TIGR01166 81 LFAAD-------VDQDVAFGPLNLglSEAEVERRVREALTAVGASGLRERPTHC------LSGGEKKRVAIAGAVAMRPD 147
|
170 180 190
....*....|....*....|....*....|....*...
gi 618014015 252 LLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIH 289
Cdd:TIGR01166 148 VLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
104-316 |
1.10e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 77.72 E-value: 1.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTL---LNAIaFRSSKGVQIspstVRLLN-GHPIDAKEMQARCAYVQQ--DDLFIG 177
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLalhLNGL-LRPQKGKVL----VSGIDtGDFSKLQGIRKLVGIVFQnpETQFVG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SlTAREHLIF--QAMVRMPRHTTKkqkiqRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLIC 255
Cdd:PRK13644 93 R-TVEEDLAFgpENLCLPPIEIRK-----RVDRALAEIGLEKYRHR------SPKTLSGGQGQCVALAGILTMEPECLIF 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 256 DEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHqpSSELFELFDKILLMAEGRVAFLGTP 316
Cdd:PRK13644 161 DEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH--NLEELHDADRIIVMDRGKIVLEGEP 219
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
101-314 |
1.15e-15 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 76.52 E-value: 1.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPSTVRLLnghpIDAKEMqarcAYVQQDDLFIGslt 180
Cdd:cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIA-----GL-EEPTSGRIY----IGGRDV----TDLPPKDRDIA--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 181 arehLIFQAMVRMPRHT-------------TKKQKI-QRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEA 246
Cdd:cd03301 76 ----MVFQNYALYPHMTvydniafglklrkVPKDEIdERVREVAELLQIEHLLDR------KPKQLSGGQRQRVALGRAI 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 247 LTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRVAFLG 314
Cdd:cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRlGTTTIYVTHD-QVEAMTMADRIAVMNDGQIQQIG 213
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
102-318 |
1.33e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 77.58 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 102 HLLKNVSGVAYPGELLAVMGSSGAGKTTLlnaiaFRSSKGVqISPSTVRLL-NGHPID--AK---EMQARCAYVQQD-DL 174
Cdd:PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTL-----FQNLNGI-LKPSSGRILfDGKPIDysRKglmKLRESVGMVFQDpDN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREHLIFQAM-VRMPrhttKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLL 253
Cdd:PRK13636 94 QLFSASVYQDVSFGAVnLKLP----EDEVRKRVDNALKRTGIEHLKDK------PTHCLSFGQKKRVAIAGVLVMEPKVL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHqpSSELFELF-DKILLMAEGRVAFLGTPGE 318
Cdd:PRK13636 164 VLDEPTAGLDPMGVSEIMKLLVEMQKElGLTIIIATH--DIDIVPLYcDNVFVMKEGRVILQGNPKE 228
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
113-318 |
1.35e-15 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 78.58 E-value: 1.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDAKEMQAR-CAYV-QQDDLFiGSLTAREHLIFq 188
Cdd:COG3839 28 DGEFLVLLGPSGCGKSTLLRMIAglEDPTSG-EI------LIGGRDVTDLPPKDRnIAMVfQSYALY-PHMTVYENIAF- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 189 AMvRMpRHTTKKQKIQRVDQV-----IQDLsLGKcqntligvpgRVKGLSGGERKRLAFAsEAL-TDPPLLICDEPTSGL 262
Cdd:COG3839 99 PL-KL-RKVPKAEIDRRVREAaellgLEDL-LDR----------KPKQLSGGQRQRVALG-RALvREPKVFLLDEPLSNL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 263 DsfmAHSVVQV---LKKLSQK-GKTVILTIHQPsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG3839 165 D---AKLRVEMraeIKRLHRRlGTTTIYVTHDQ-VEAMTLADRIAVMNDGRIQQVGTPEE 220
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
101-310 |
1.65e-15 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 79.89 E-value: 1.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAI-AFRSSKG-VQIspstvrllNGHP---IDAKEMQARCAYVQQD-DL 174
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALlGFLPYQGsLKI--------NGIElreLDPESWRKHLSWVGQNpQL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLtaREHlifqamVRMPRHTTKKQKIQR------VDQVIQDLSLGkcQNTLIGvpGRVKGLSGGERKRLAFASEALT 248
Cdd:PRK11174 435 PHGTL--RDN------VLLGNPDASDEQLQQalenawVSEFLPLLPQG--LDTPIG--DQAAGLSVGQAQRLALARALLQ 502
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 249 DPPLLICDEPTSGLDSFMAHSVVQVLKKLSQkGKTVILTIHQpsseLFEL--FDKILLMAEGRV 310
Cdd:PRK11174 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLMVTHQ----LEDLaqWDQIWVMQDGQI 561
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
113-291 |
2.08e-15 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 75.23 E-value: 2.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDAkemqARCAYvQQDDLFIG-------SLTARE 183
Cdd:PRK13538 26 AGELVQIEGPNGAGKTSLLRILAglARPDAG-EV------LWQGEPIRR----QRDEY-HQDLLYLGhqpgiktELTALE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 184 HLIF-QAMVRMprhttkkqkiQRVDQVIQdlSLGKcqntlIGVPGR----VKGLSGGERKRLAFASEALTDPPLLICDEP 258
Cdd:PRK13538 94 NLRFyQRLHGP----------GDDEALWE--ALAQ-----VGLAGFedvpVRQLSAGQQRRVALARLWLTRAPLWILDEP 156
|
170 180 190
....*....|....*....|....*....|....*.
gi 618014015 259 TSGLDsfmAHSVVQVLKKLSQ---KGKTVILTIHQP 291
Cdd:PRK13538 157 FTAID---KQGVARLEALLAQhaeQGGMVILTTHQD 189
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
100-318 |
2.31e-15 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 76.22 E-value: 2.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDAKEMQARC----AYVQQD- 172
Cdd:COG1137 15 KRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVglVKPDSG-RI------FLDGEDITHLPMHKRArlgiGYLPQEa 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 DLFIGsLTAREHLifQAMVRMpRHTTKKQKIQRVDQVIQDLSLGKCQNTligvpgrvKG--LSGGERKRLAFAsEAL-TD 249
Cdd:COG1137 88 SIFRK-LTVEDNI--LAVLEL-RKLSKKEREERLEELLEEFGITHLRKS--------KAysLSGGERRRVEIA-RALaTN 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 250 PPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:COG1137 155 PKFILLDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNV-RETLGICDRAYIISEGKVLAEGTPEE 222
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
103-298 |
2.47e-15 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 75.09 E-value: 2.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPID--AKEMQARCAYVQQDDLFIGSLT 180
Cdd:TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILA-----GLLRPDSGEVRWNGTPLAeqRDEPHENILYLGHLPGLKPELS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 181 AREHLIFQAMVRMPRHTTkkqkiqrVDQVIQDLSLGKCQNTLigvpgrVKGLSGGERKRLAFASEALTDPPLLICDEPTS 260
Cdd:TIGR01189 90 ALENLHFWAAIHGGAQRT-------IEDALAAVGLTGFEDLP------AAQLSAGQQRRLALARLWLSRRPLWILDEPTT 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 618014015 261 GLDS-----FMAHsvvqvLKKLSQKGKTVILTIHQ--PSSELFEL 298
Cdd:TIGR01189 157 ALDKagvalLAGL-----LRAHLARGGIVLLTTHQdlGLVEAREL 196
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
95-311 |
3.33e-15 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 75.89 E-value: 3.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 95 HIPA--PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FrsskgvqISPSTVRL-LNGHPIDAKemQARCAYVQ 170
Cdd:PRK11248 6 HLYAdyGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAgF-------VPYQHGSItLDGKPVEGP--GAERGVVF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 171 QDDLFIGSLTAREHLIF----QAMVRMPRHTTKKQKIQRVDqviqdlslgkcqntLIGVPGR-VKGLSGGERKRLAFASE 245
Cdd:PRK11248 77 QNEGLLPWRNVQDNVAFglqlAGVEKMQRLEIAHQMLKKVG--------------LEGAEKRyIWQLSGGQRQRVGIARA 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 246 ALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQPSSELFELFDKILLM-AEGRVA 311
Cdd:PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQEtGKQVLLITHDIEEAVFMATELVLLSpGPGRVV 210
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
102-324 |
5.50e-15 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 76.66 E-value: 5.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 102 HLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAF--RSSKGvqispsTVRLlNGHPI---DAKEMQA---RCAYV-QQD 172
Cdd:COG1135 19 TALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLleRPTSG------SVLV-DGVDLtalSERELRAarrKIGMIfQHF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 DLFiGSLTAREHlifqamVRMP---RHTTKKQKIQRVDQVIQdlslgkcqntLIGVPGRVKG----LSGGERKRLAFAsE 245
Cdd:COG1135 92 NLL-SSRTVAEN------VALPleiAGVPKAEIRKRVAELLE----------LVGLSDKADAypsqLSGGQKQRVGIA-R 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 246 AL-TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTpgeAVDFF 323
Cdd:COG1135 154 ALaNNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHE-MDVVRRICDRVAVLENGRIVEQGP---VLDVF 229
|
.
gi 618014015 324 S 324
Cdd:COG1135 230 A 230
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
104-311 |
7.20e-15 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 72.46 E-value: 7.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPSTVR-LLNGHPIDakemqarcayvqqddlFIGSLTAR 182
Cdd:cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILS-----GL-YKPDSGEiLVDGKEVS----------------FASPRDAR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 183 EHLIfqAMVrmprHttkkqkiqrvdqviqdlslgkcQntligvpgrvkgLSGGERKRLAFASEALTDPPLLICDEPTSGL 262
Cdd:cd03216 74 RAGI--AMV----Y----------------------Q------------LSVGERQMVEIARALARNARLLILDEPTAAL 113
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 618014015 263 DSFMAHSVVQVLKKLSQKGKTVILTIHQPsSELFELFDKILLMAEGRVA 311
Cdd:cd03216 114 TPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVV 161
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
71-314 |
1.58e-14 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 73.52 E-value: 1.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 71 AVHQPGSGWKqllNRVKGVLCNE-RHIPAprkhlLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPS-- 147
Cdd:cd03267 11 RVYSKEPGLI---GSLKSLFKRKyREVEA-----LKGISFTIEKGEIVGFIGPNGAGKTTTLKILS-----GL-LQPTsg 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 148 TVRLLNGHPIDAK-EMQARCAYV--QQDDLfIGSLTAREHLIF-QAMVRMPRHTTKKqkiqRVDQVIQDLSLGKcqntLI 223
Cdd:cd03267 77 EVRVAGLVPWKRRkKFLRRIGVVfgQKTQL-WWDLPVIDSFYLlAAIYDLPPARFKK----RLDELSELLDLEE----LL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 224 GVPgrVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLS-QKGKTVILTIHQpSSELFELFDKI 302
Cdd:cd03267 148 DTP--VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNrERGTTVLLTSHY-MKDIEALARRV 224
|
250
....*....|..
gi 618014015 303 LLMAEGRVAFLG 314
Cdd:cd03267 225 LVIDKGRLLYDG 236
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
104-291 |
1.98e-14 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 76.69 E-value: 1.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAF--RSSKGV-QISPSTVRLLNGhpidakemqarcayvqqDDLfigSLT 180
Cdd:PRK10535 24 LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCldKPTSGTyRVAGQDVATLDA-----------------DAL---AQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 181 AREHL--IFQAMVRMPrHTT---------------KKQKIQRVDQVIQDLSLGKcqntliGVPGRVKGLSGGERKRLAFA 243
Cdd:PRK10535 84 RREHFgfIFQRYHLLS-HLTaaqnvevpavyagleRKQRLLRAQELLQRLGLED------RVEYQPSQLSGGQQQRVSIA 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 618014015 244 SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQP 291
Cdd:PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
104-318 |
2.15e-14 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 73.34 E-value: 2.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FRSSKGVQIspstvrLLNGHPI---DAKEMQARCAYVQQD-DLFIGS 178
Cdd:cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLErFYDPTSGEI------LLDGVDIrdlNLRWLRSQIGLVSQEpVLFDGT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LtaREHLIF---QAMVRMPRHTTKKQKIqrvDQVIQDLSLGkcQNTLIGVPGrvKGLSGGERKRLAFASEALTDPPLLIC 255
Cdd:cd03249 93 I--AENIRYgkpDATDEEVEEAAKKANI---HDFIMSLPDG--YDTLVGERG--SQLSGGQKQRIAIARALLRNPKILLL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 256 DEPTSGLDsfmAHSVVQVLKKLSQ--KGKTVILTIHQPSSelFELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03249 164 DEATSALD---AESEKLVQEALDRamKGRTTIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDE 223
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
101-318 |
2.29e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 73.87 E-value: 2.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTT---LLNAIaFRSSKG-VQISPSTVRLLNghpidAKEMQARCAYVQQ--DDL 174
Cdd:PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTiskILTGL-LKPQSGeIKIDGITISKEN-----LKEIRKKIGIIFQnpDNQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSlTAREHLIFQAMVRMPRHTTKKQKIQRVDQVIQDLSLGK--CQNtligvpgrvkgLSGGERKRLAFASEALTDPPL 252
Cdd:PRK13632 96 FIGA-TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDkePQN-----------LSGGQKQRVAIASVLALNPEI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 253 LICDEPTSGLDSFMAHSVVQVLKKLSQKG-KTVILTIHQPSSELfeLFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRkKTLISITHDMDEAI--LADKVIVFSEGKLIAQGKPKE 228
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
72-315 |
2.29e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 74.74 E-value: 2.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 72 VHQPGSGwkqLLNRVKGVLCNERHIpaprKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPS--TV 149
Cdd:COG4586 13 VYEKEPG---LKGALKGLFRREYRE----VEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLT-----GI-LVPTsgEV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 150 RLLNGHPidAKEmqaRCAYVQQddlfIGS-----------LTAREHL-IFQAMVRMPRHTTKKqkiqRVDQVIQDLSLGK 217
Cdd:COG4586 80 RVLGYVP--FKR---RKEFARR----IGVvfgqrsqlwwdLPAIDSFrLLKAIYRIPDAEYKK----RLDELVELLDLGE 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 218 cqntLIGVPgrVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELF 296
Cdd:COG4586 147 ----LLDTP--VRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRErGTTILLTSHD-MDDIE 219
|
250
....*....|....*....
gi 618014015 297 ELFDKILLMAEGRVAFLGT 315
Cdd:COG4586 220 ALCDRVIVIDHGRIIYDGS 238
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
85-310 |
2.91e-14 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 75.63 E-value: 2.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 85 RVKGVLCNerHIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIaFRSSKGvQISPSTvrLLNGHPID----AK 160
Cdd:TIGR02633 259 EARNLTCW--DVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQAL-FGAYPG-KFEGNV--FINGKPVDirnpAQ 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 161 EMQARCAYVQQD---DLFIGSLTAREHLIFQAMVRMPRHTT--KKQKIQRVDQVIQDLSLGKCQNTLigvpgRVKGLSGG 235
Cdd:TIGR02633 333 AIRAGIAMVPEDrkrHGIVPILGVGKNITLSVLKSFCFKMRidAAAELQIIGSAIQRLKVKTASPFL-----PIGRLSGG 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 236 ERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTihqpSSELFE---LFDKILLMAEGRV 310
Cdd:TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVV----SSELAEvlgLSDRVLVIGEGKL 481
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
104-314 |
3.78e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 75.47 E-value: 3.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPID----AKEMQARCAYVQQDDLFIGSL 179
Cdd:PRK15439 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIA-----GIVPPDSGTLEIGGNPCArltpAKAHQLGIYLVPQEPLLFPNL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLIFqamvRMPRHTTKKQKIQrvdQVIQDLSlgkCQNTLIGVPGrvkGLSGGERKRLAFASEALTDPPLLICDEPT 259
Cdd:PRK15439 102 SVKENILF----GLPKRQASMQKMK---QLLAALG---CQLDLDSSAG---SLEVADRQIVEILRGLMRDSRILILDEPT 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 260 SGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLG 314
Cdd:PRK15439 169 ASLTPAETERLFSRIRELLAQGVGIVFISHK-LPEIRQLADRISVMRDGTIALSG 222
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
104-318 |
4.06e-14 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 73.13 E-value: 4.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTL---LNAIAFRSS-----KGVQISPSTVRllnghpidakEMQARCAYVQQ--DD 173
Cdd:PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLaklLNGLLLPEAgtitvGGMVLSEETVW----------DVRRQVGMVFQnpDN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSlTAREHLIFQAMVR-MPRhttkKQKIQRVDQVIQDLSLgkcQNTLIGVPGRvkgLSGGERKRLAFASEALTDPPL 252
Cdd:PRK13635 93 QFVGA-TVQDDVAFGLENIgVPR----EEMVERVDQALRQVGM---EDFLNREPHR---LSGGQKQRVAIAGVLALQPDI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 253 LICDEPTSGLDSFMAHSVVQVLKKL-SQKGKTVILTIHQPSSELFElfDKILLMAEGRVAFLGTPGE 318
Cdd:PRK13635 162 IILDEATSMLDPRGRREVLETVRQLkEQKGITVLSITHDLDEAAQA--DRVIVMNKGEILEEGTPEE 226
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
112-316 |
5.81e-14 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 75.82 E-value: 5.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 112 YPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPIDAK--EMQARCAYVQQDDLFIGSLTAREHLIFQA 189
Cdd:TIGR01257 954 YENQITAFLGHNGAGKTTTLSILT-----GLLPPTSGTVLVGGKDIETNldAVRQSLGMCPQHNILFHHLTVAEHILFYA 1028
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 190 MVRmprHTTKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHS 269
Cdd:TIGR01257 1029 QLK---GRSWEEAQLEMEAMLEDTGLHHKRNE------EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRS 1099
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 618014015 270 VVQVLKKLsQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTP 316
Cdd:TIGR01257 1100 IWDLLLKY-RSGRTIIMSTHH-MDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
101-318 |
6.45e-14 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 71.85 E-value: 6.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTT---LLNAIAFRSSKGVQISPSTVRLLnghPIDAKEMQArCAYVQQDDLFIG 177
Cdd:PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTtfyMVVGIVPRDAGNIIIDDEDISLL---PLHARARRG-IGYLPQEASIFR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHLIfqAMVRMPRHTTKKQKIQRVDQVIQDLSLGKCQNTLigvpgrVKGLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:PRK10895 92 RLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM------GQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK10895 164 PFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN-VRETLAVCERAYIVSQGHLIAHGTPTE 223
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
101-322 |
8.14e-14 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 75.20 E-value: 8.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAiafrsskgvqispstvrLLNGHPIDAKEMQAR--CAYVQQdDLFIGS 178
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQS-----------------LLSQFEISEGRVWAErsIAYVPQ-QAWIMN 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTAREHLIFQAmvrmPRHTTKKQKIQRVDQVIQDL-SLGKCQNTLIGVPGrvKGLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:PTZ00243 735 ATVRGNILFFD----EEDAARLADAVRVSQLEADLaQLGGGLETEIGEKG--VNLSGGQKARVSLARAVYANRDVYLLDD 808
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpsSELFELFDKILLMAEGRVAFlgtPGEAVDF 322
Cdd:PTZ00243 809 PLSALDAHVGERVVEECFLGALAGKTRVLATHQ--VHVVPRADYVVALGDGRVEF---SGSSADF 868
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
113-315 |
1.04e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 75.05 E-value: 1.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTllnaiAFRSSKGVQISPSTVRLLNGHPI--DAKEMQARCAYVQQDDLFIGSLTAREHLIFQAM 190
Cdd:TIGR01257 1964 PGECFGLLGVNGAGKTT-----TFKMLTGDTTVTSGDATVAGKSIltNISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR 2038
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 191 VRmprhTTKKQKIQRV-DQVIQDLSLGKCQNTLIGVpgrvkgLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHS 269
Cdd:TIGR01257 2039 LR----GVPAEEIEKVaNWSIQSLGLSLYADRLAGT------YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRM 2108
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 618014015 270 VVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGT 315
Cdd:TIGR01257 2109 LWNTIVSIIREGRAVVLTSHS-MEECEALCTRLAIMVKGAFQCLGT 2153
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
114-320 |
1.07e-13 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 74.78 E-value: 1.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTT-------LLNAiafrsSKGvqispsTVRLLnGHPIDAKEMQAR--CAYVQQDDLFIGSLTAREH 184
Cdd:NF033858 292 GEIFGFLGSNGCGKSTtmkmltgLLPA-----SEG------EAWLF-GQPVDAGDIATRrrVGYMSQAFSLYGELTVRQN 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 185 LIFQA-MVRMPRHTTKkqkiQRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFASEALTDPPLLICDEPTSGLD 263
Cdd:NF033858 360 LELHArLFHLPAAEIA----ARVAEMLERFDLADVADAL---PDS---LPLGIRQRLSLAVAVIHKPELLILDEPTSGVD 429
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 264 -----SFMahsvvQVLKKLS-QKGKTVILTIHqpsselF----ELFDKILLMAEGRVAFLGTPGEAV 320
Cdd:NF033858 430 pvardMFW-----RLLIELSrEDGVTIFISTH------FmneaERCDRISLMHAGRVLASDTPAALV 485
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
103-291 |
1.32e-13 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 69.96 E-value: 1.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPS--TVRLLNGhpidakemqARCAYVQQ----DDLFi 176
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLA-----GV-LRPTsgTVRRAGG---------ARVAYVPQrsevPDSL- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 gSLTAREhlifqaMVRMPR--HTTKKQKIQRVDQVIQDLSLGKCQntLIGVPGR-VKGLSGGERKRLAFASEALTDPPLL 253
Cdd:NF040873 71 -PLTVRD------LVAMGRwaRRGLWRRLTRDDRAAVDDALERVG--LADLAGRqLGELSGGQRQRALLAQGLAQEADLL 141
|
170 180 190
....*....|....*....|....*....|....*...
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQP 291
Cdd:NF040873 142 LLDEPTTGLDAESRERIIALLAEEHARGATVVVVTHDL 179
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
231-318 |
1.36e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 72.19 E-value: 1.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 231 GLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELfELFDKILLMAEGRV 310
Cdd:PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVMDKGKI 254
|
....*...
gi 618014015 311 AFLGTPGE 318
Cdd:PRK13631 255 LKTGTPYE 262
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
101-318 |
1.56e-13 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 70.73 E-value: 1.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQiSPSTVRLLnghpIDAKEMQARCAY------VQQDDL 174
Cdd:cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA-----GFE-TPTSGEIL----LDGKDITNLPPHkrpvntVFQNYA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREHLIFQ-AMVRMPRHTTKkqkiQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLL 253
Cdd:cd03300 83 LFPHLTVFENIAFGlRLKKLPKAEIK----ERVAEALDLVQLEGYANR------KPSQLSGGQQQRVAIARALVNEPKVL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03300 153 LLDEPLGALDLKLRKDMQLELKRLQKElGITFVFVTHD-QEEALTMSDRIAVMNKGKIQQIGTPEE 217
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
104-321 |
1.81e-13 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 73.46 E-value: 1.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKG-VQISPSTVRLLNghpidAKEMQARCAYVQQ--------- 171
Cdd:PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLqrVFDPQSGrILIDGTDIRTVT-----RASLRRNIAVVFQdaglfnrsi 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 -DDLFIGSLTAREHLIFQAMVRMPRHTTKKQKIQRVDqviqdlslgkcqnTLIGVPGRVkgLSGGERKRLAFASEALTDP 250
Cdd:PRK13657 426 eDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYD-------------TVVGERGRQ--LSGGERQRLAIARALLKDP 490
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 251 PLLICDEPTSGLDSFMAHSVVQVLKKLSqKGKTVILTIHQPSSelFELFDKILLMAEGRVAFLGTPGEAVD 321
Cdd:PRK13657 491 PILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLST--VRNADRILVFDNGRVVESGSFDELVA 558
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
100-286 |
1.96e-13 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 71.62 E-value: 1.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVA---YPGELLAVMGSSGAGKTTLLNAIafrsskgVQISPSTVR-----LLNGHPI---DAKEMQA---- 164
Cdd:COG0444 14 RRGVVKAVDGVSfdvRRGETLGLVGESGSGKSTLARAI-------LGLLPPPGItsgeiLFDGEDLlklSEKELRKirgr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 165 RCAYVQQDDLfiGSL----TAREHLIfqAMVRMPRHTTKKQKIQRVDQVIQDLSlgkcqntlIGVPGRVKG-----LSGG 235
Cdd:COG0444 87 EIQMIFQDPM--TSLnpvmTVGDQIA--EPLRIHGGLSKAEARERAIELLERVG--------LPDPERRLDrypheLSGG 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 618014015 236 ERKRLAFASeAL-TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVIL 286
Cdd:COG0444 155 MRQRVMIAR-ALaLEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILF 206
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
99-289 |
2.04e-13 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 70.97 E-value: 2.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIafrsskGVQISPSTVR-LLNGHPI---DAKEMQARCAYVQQDDL 174
Cdd:PRK10575 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML------GRHQPPSEGEiLLDAQPLeswSSKAFARKVAYLPQQLP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREhliFQAMVRMPRHTT----KKQKIQRVDQVIQDLSLGKCQNTLigvpgrVKGLSGGERKRLAFASEALTDP 250
Cdd:PRK10575 96 AAEGMTVRE---LVAIGRYPWHGAlgrfGAADREKVEEAISLVGLKPLAHRL------VDSLSGGERQRAWIAMLVAQDS 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 618014015 251 PLLICDEPTSGLDsfMAHS--VVQVLKKLSQ-KGKTVILTIH 289
Cdd:PRK10575 167 RCLLLDEPTSALD--IAHQvdVLALVHRLSQeRGLTVIAVLH 206
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
104-316 |
2.12e-13 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 69.83 E-value: 2.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIaFRSskgVQISPSTVRLlNGHPI---DAKEMQARCAYVQQDD-LFIGSL 179
Cdd:cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLAL-FRL---VELSSGSILI-DGVDIskiGLHDLRSRISIIPQDPvLFSGTI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 taREHL-IFQamvrmpRHTTKkqkiqRVDQVIQDLSLGK-CQNTLIGVPGRV----KGLSGGERKRLAFASEALTDPPLL 253
Cdd:cd03244 95 --RSNLdPFG------EYSDE-----ELWQALERVGLKEfVESLPGGLDTVVeeggENLSVGQRQLLCLARALLRKSKIL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKlSQKGKTVIL------TIHQpsselfelFDKILLMAEGRVAFLGTP 316
Cdd:cd03244 162 VLDEATASVDPETDALIQKTIRE-AFKDCTVLTiahrldTIID--------SDRILVLDKGRVVEFDSP 221
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
101-315 |
2.19e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 73.18 E-value: 2.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGvQISPS--TVRLlnGHpidakemQARCAYVQQD-DLFIG 177
Cdd:COG0488 328 KTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLA-----G-ELEPDsgTVKL--GE-------TVKIGYFDQHqEELDP 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHLifqamvrmpRHTTKKQKIQRVDQVIQDLSL-GKCQNTLIGVpgrvkgLSGGERKRLAFASEALTDPPLLICD 256
Cdd:COG0488 393 DKTVLDEL---------RDGAPGGTEQEVRGYLGRFLFsGDDAFKPVGV------LSGGEKARLALAKLLLSPPNVLLLD 457
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLsqKGkTVILTIHQPSselF--ELFDKILLMAEGRV-AFLGT 315
Cdd:COG0488 458 EPTNHLDIETLEALEEALDDF--PG-TVLLVSHDRY---FldRVATRILEFEDGGVrEYPGG 513
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
104-290 |
6.29e-13 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 68.89 E-value: 6.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLL---NAIAFRSSKGVQISPSTVRLLNghPIDAKEMQARCAYV----QQDDLFi 176
Cdd:COG4161 18 LFDINLECPSGETLVLLGPSGAGKSSLLrvlNLLETPDSGQLNIAGHQFDFSQ--KPSEKAIRLLRQKVgmvfQQYNLW- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHLIfQAMVRMPRhTTKKQKIQRVDQVIQDLSLgkcQNTLIGVPGRvkgLSGGERKRLAFASEALTDPPLLICD 256
Cdd:COG4161 95 PHLTVMENLI-EAPCKVLG-LSKEQAREKAMKLLARLRL---TDKADRFPLH---LSGGQQQRVAIARALMMEPQVLLFD 166
|
170 180 190
....*....|....*....|....*....|....
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQ 290
Cdd:COG4161 167 EPTAALDPEITAQVVEIIRELSQTGITQVIVTHE 200
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
100-318 |
6.62e-13 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 70.50 E-value: 6.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHpiDAKEMQAR---CAYVQQDDLFI 176
Cdd:PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA-----GLEHQTSGHIRFHGT--DVSRLHARdrkVGFVFQHYALF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHLIFQAMVrMPRHTTKKQKI--QRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFASEALTDPPLLI 254
Cdd:PRK10851 87 RHMTVFDNIAFGLTV-LPRRERPNAAAikAKVTQLLEMVQLAHLADRY---PAQ---LSGGQKQRVALARALAVEPQILL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSQKGK--TVILTIHQpsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK10851 160 LDEPFGALDAQVRKELRRWLRQLHEELKftSVFVTHDQ--EEAMEVADRVVVMSQGNIEQAGTPDQ 223
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
99-315 |
6.74e-13 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 71.77 E-value: 6.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNaIAFR---SSKGvQIspstvrLLNGHPIDA---KEMQARCAYVQQD 172
Cdd:COG5265 369 PERPILKGVSFEVPAGKTVAIVGPSGAGKSTLAR-LLFRfydVTSG-RI------LIDGQDIRDvtqASLRAAIGIVPQD 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 D-LF-------I--GSLTAREHLIFQAMvrmprhttkkqKIQRVDQVIQDLSLGKcqNTLIGVPGrVKgLSGGERKRLAF 242
Cdd:COG5265 441 TvLFndtiaynIayGRPDASEEEVEAAA-----------RAAQIHDFIESLPDGY--DTRVGERG-LK-LSGGEKQRVAI 505
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 243 ASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQkGKTVILTIHQPS----SelfelfDKILLMAEGRVAFLGT 315
Cdd:COG5265 506 ARTLLKNPPILIFDEATSALDSRTERAIQAALREVAR-GRTTLVIAHRLStivdA------DEILVLEAGRIVERGT 575
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
80-280 |
7.85e-13 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 71.25 E-value: 7.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 80 KQLLNRVKGvlcnerHIPAprkhlLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIaFR--SSKGvQIspstvrLLNGHPI 157
Cdd:COG4172 289 RGLFRRTVG------HVKA-----VDGVSLTLRRGETLGLVGESGSGKSTLGLAL-LRliPSEG-EI------RFDGQDL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 158 DA---KEMQARCAYVQ---QDDLfiGSLTAR---EHLIFQAMVRMPRHTTKKQKIQRVDQVIQDlslgkcqntlIGVPGR 228
Cdd:COG4172 350 DGlsrRALRPLRRRMQvvfQDPF--GSLSPRmtvGQIIAEGLRVHGPGLSAAERRARVAEALEE----------VGLDPA 417
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 229 VKG-----LSGGERKRLAFAsEAL-TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK 280
Cdd:COG4172 418 ARHrypheFSGGQRQRIAIA-RALiLEPKLLVLDEPTSALDVSVQAQILDLLRDLQRE 474
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
95-315 |
8.16e-13 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 71.28 E-value: 8.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 95 HIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQISPSTVRLlngHPIDAKEMQARCAYVQQD 172
Cdd:PRK10789 322 TYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQrhFDVSEG-DIRFHDIPL---TKLQLDSWRSRLAVVSQT 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 DLFIGSLTAREhlifqamVRMPRHTTKKQKIQRVDQ---VIQD-LSLGKCQNTLIGVPGRVkgLSGGERKRLAFASEALT 248
Cdd:PRK10789 398 PFLFSDTVANN-------IALGRPDATQQEIEHVARlasVHDDiLRLPQGYDTEVGERGVM--LSGGQKQRISIARALLL 468
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 249 DPPLLICDEPTSGLDSFMAHsvvQVLKKLSQ--KGKTVILTIHQPSSeLFELfDKILLMAEGRVAFLGT 315
Cdd:PRK10789 469 NAEILILDDALSAVDGRTEH---QILHNLRQwgEGRTVIISAHRLSA-LTEA-SEILVMQHGHIAQRGN 532
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
101-312 |
8.45e-13 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 68.96 E-value: 8.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDAKEMQARCAY---VQQDDLf 175
Cdd:COG1101 19 KRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAgsLPPDSG-SI------LIDGKDVTKLPEYKRAKYigrVFQDPM- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 IG---SLTAREHLifqAM------VRMPRHTTKKQKIQRVDQVIQDLSLGkCQNTLiGVPgrVKGLSGGERKRLAFASEA 246
Cdd:COG1101 91 MGtapSMTIEENL---ALayrrgkRRGLRRGLTKKRRELFRELLATLGLG-LENRL-DTK--VGLLSGGQRQALSLLMAT 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 247 LTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGK-TVILTIHQPSSELfELFDKILLMAEGRVAF 312
Cdd:COG1101 164 LTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNlTTLMVTHNMEQAL-DYGNRLIMMHEGRIIL 229
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
101-263 |
9.67e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 70.86 E-value: 9.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGvQISPS--TVRLLNGhpidakemqARCAYVQQDDLFIGS 178
Cdd:COG0488 11 RPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILA-----G-ELEPDsgEVSIPKG---------LRIGYLPQEPPLDDD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTAREHL------IFQAMVRMPRHTTKK----------QKIQ-------------RVDQVIQDLSLGKCQNTligvpGRV 229
Cdd:COG0488 76 LTVLDTVldgdaeLRALEAELEELEAKLaepdedlerlAELQeefealggweaeaRAEEILSGLGFPEEDLD-----RPV 150
|
170 180 190
....*....|....*....|....*....|....
gi 618014015 230 KGLSGGERKRLAFASEALTDPPLLICDEPTSGLD 263
Cdd:COG0488 151 SELSGGWRRRVALARALLSEPDLLLLDEPTNHLD 184
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
114-287 |
1.03e-12 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 68.50 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTL---LNAIAFRSSKGVQISPSTVRLlnGHPIDAKEMQARCAYV----QQDDLFiGSLTAREHLI 186
Cdd:PRK11124 28 GETLVLLGPSGAGKSSLlrvLNLLEMPRSGTLNIAGNHFDF--SKTPSDKAIRELRRNVgmvfQQYNLW-PHLTVQQNLI 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 187 fQAMVRMpRHTTKKQKIQRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFM 266
Cdd:PRK11124 105 -EAPCRV-LGLSKDQALARAEKLLERLRLKPYADRF---PLH---LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
|
170 180
....*....|....*....|..
gi 618014015 267 AHSVVQVLKKLSQKGKT-VILT 287
Cdd:PRK11124 177 TAQIVSIIRELAETGITqVIVT 198
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
113-324 |
1.07e-12 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 68.62 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIAF--RSSKGV----QISPSTVRLLNGHPIDAKEMQARCAYVQQDDLFIGSLTAREHLI 186
Cdd:PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLleQPEAGTirvgDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 187 FQAMVrmPRHTTKKQKIQRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFM 266
Cdd:PRK11264 108 EGPVI--VKGEPKEEATARARELLAKVGLAGKETSY---PRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 267 AHSVVQVLKKLSQKGKTVILTIHQPSselF--ELFDKILLMAEGRVAflgTPGEAVDFFS 324
Cdd:PRK11264 180 VGEVLNTIRQLAQEKRTMVIVTHEMS---FarDVADRAIFMDQGRIV---EQGPAKALFA 233
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
85-319 |
1.10e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 70.83 E-value: 1.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 85 RVKGV-LCNERHIPAprkhlLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGV-QISPSTVRLlNGHPI---DA 159
Cdd:COG3845 259 EVENLsVRDDRGVPA-----LKDVSLEVRAGEILGIAGVAGNGQSELAEALA-----GLrPPASGSIRL-DGEDItglSP 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 160 KEM-QARCAYVQQDDL---FIGSLTAREHLIFQAMVRMP---RHTTKKQKIQR-VDQVIQDLSLgKCQNtlIGVPgrVKG 231
Cdd:COG3845 328 RERrRLGVAYIPEDRLgrgLVPDMSVAENLILGRYRRPPfsrGGFLDRKAIRAfAEELIEEFDV-RTPG--PDTP--ARS 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 232 LSGGERKRLAFASEALTDPPLLICDEPTSGLDsFMA-HSVVQVLKKLSQKGKTVILtIhqpSSELFELF---DKILLMAE 307
Cdd:COG3845 403 LSGGNQQKVILARELSRDPKLLIAAQPTRGLD-VGAiEFIHQRLLELRDAGAAVLL-I---SEDLDEILalsDRIAVMYE 477
|
250
....*....|..
gi 618014015 308 GRVAFLGTPGEA 319
Cdd:COG3845 478 GRIVGEVPAAEA 489
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
101-280 |
1.24e-12 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 70.89 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTT----LLNAIAfrsSKGvQIspstvrLLNGHPI---DAKEM---QARCAYVQ 170
Cdd:PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLIN---SQG-EI------WFDGQPLhnlNRRQLlpvRHRIQVVF 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 171 QDDLfiGSLTAR---EHLIFQAMVRMPRHTTKKQKIQRVDQVIQDLSLGKcqNTLIGVPGRvkgLSGGERKRLAFASEAL 247
Cdd:PRK15134 369 QDPN--SSLNPRlnvLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP--ETRHRYPAE---FSGGQRQRIAIARALI 441
|
170 180 190
....*....|....*....|....*....|...
gi 618014015 248 TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK 280
Cdd:PRK15134 442 LKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
99-315 |
1.24e-12 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 71.29 E-value: 1.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTT----LLNaiaFRSSKGVQIspstvrLLNGHPI---DAKEMQARCAYVQQ 171
Cdd:TIGR00958 492 PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTvaalLQN---LYQPTGGQV------LLDGVPLvqyDHHYLHRQVALVGQ 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 DD-LFIGSLTareHLIFQAMVRMPR-HTTKKQKIQRVDQVIQDLSLGkcQNTLIGVPGRVkgLSGGERKRLAFASEALTD 249
Cdd:TIGR00958 563 EPvLFSGSVR---ENIAYGLTDTPDeEIMAAAKAANAHDFIMEFPNG--YDTEVGEKGSQ--LSGGQKQRIAIARALVRK 635
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 250 PPLLICDEPTSGLDSFMAHSVVQvlkKLSQKGKTVILTIHQPSseLFELFDKILLMAEGRVAFLGT 315
Cdd:TIGR00958 636 PRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGT 696
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
105-311 |
1.49e-12 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 70.58 E-value: 1.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 105 KNVSGVAYPGELLAVMGSSGAGKTTLLNAIaFRSSK---------GVQISPSTvrllnghPIDA--KEMqarcAYV---Q 170
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCL-FGVDKraggeirlnGKDISPRS-------PLDAvkKGM----AYItesR 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 171 QDDLFIGSLTAREHLIFQAMVRMPR--------HTTKKQKIqrVDQVIQDLSLgKCQNtligVPGRVKGLSGGERKRLAF 242
Cdd:PRK09700 348 RDNGFFPNFSIAQNMAISRSLKDGGykgamglfHEVDEQRT--AENQRELLAL-KCHS----VNQNITELSGGNQQKVLI 420
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 618014015 243 ASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTihqpSSELFELF---DKILLMAEGRVA 311
Cdd:PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMV----SSELPEIItvcDRIAVFCEGRLT 488
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
113-321 |
1.81e-12 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 67.30 E-value: 1.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNG--HPIDAKEMQARCAYVQQDDLFigsltarEHLIFQAM 190
Cdd:PRK10771 24 RGERVAILGPSGAGKSTLLNLIA-----GFLTPASGSLTLNGqdHTTTPPSRRPVSMLFQENNLF-------SHLTVAQN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 191 VRMPRHT----TKKQKIQrVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFM 266
Cdd:PRK10771 92 IGLGLNPglklNAAQREK-LHAIARQMGIEDLLARL---PGQ---LSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 267 AHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGEAVD 321
Cdd:PRK10771 165 RQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
104-310 |
1.83e-12 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 70.43 E-value: 1.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FRSSKGVQIspstvrLLNGHPIDAKEMQA---RCAYV-QQDDLFIGS 178
Cdd:PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTrFYDIDEGEI------LLDGHDLRDYTLASlrnQVALVsQNVHLFNDT 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LT------AREHLIFQAMVRMPRHTTKKQKIQRVDQVIqdlslgkcqNTLIGVPGRVkgLSGGERKRLAFASEALTDPPL 252
Cdd:PRK11176 433 IAnniayaRTEQYSREQIEEAARMAYAMDFINKMDNGL---------DTVIGENGVL--LSGGQRQRIAIARALLRDSPI 501
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 253 LICDEPTSGLDSFMAHSVVQVLKKLsQKGKTVILTIHQPSSelFELFDKILLMAEGRV 310
Cdd:PRK11176 502 LILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLST--IEKADEILVVEDGEI 556
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
118-310 |
1.86e-12 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 69.13 E-value: 1.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 118 AVMGSSGAGKTTLLNAIAfrsskGVqISPSTVRL-LNGHPIDAKEM-------QARCAYVQQDDLFIGSLTAREHLifqa 189
Cdd:PRK11144 28 AIFGRSGAGKTSLINAIS-----GL-TRPQKGRIvLNGRVLFDAEKgiclppeKRRIGYVFQDARLFPHYKVRGNL---- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 190 mvrmpRHTTKKQKIQRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHS 269
Cdd:PRK11144 98 -----RYGMAKSMVAQFDKIVALLGIEPLLDRY---PGS---LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 618014015 270 VVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRV 310
Cdd:PRK11144 167 LLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKV 207
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
104-289 |
1.86e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 68.57 E-value: 1.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTL---LNA----------IAFRSSK-------------GVQISPSTVRLLNghpi 157
Cdd:PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFiehLNAlllpdtgtieWIFKDEKnkkktkekekvleKLVIQKTRFKKIK---- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 158 DAKEMQARCAYVQQ---DDLFigSLTAREHLIFQAMvrmPRHTTKKQKIQRVDQVIQdlslgkcqntLIGVPGRVK---- 230
Cdd:PRK13651 99 KIKEIRRRVGVVFQfaeYQLF--EQTIEKDIIFGPV---SMGVSKEEAKKRAAKYIE----------LVGLDESYLqrsp 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 231 -GLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIH 289
Cdd:PRK13651 164 fELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
85-310 |
2.09e-12 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 69.96 E-value: 2.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 85 RVKGVLCneRHIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKGVQIspstvrLLNGHPID---- 158
Cdd:PRK13549 261 EVRNLTA--WDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLfgAYPGRWEGEI------FIDGKPVKirnp 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 159 AKEMQARCAYVQQD---DLFIGSLTAREHLIFQAMVRMPRHTT--KKQKIQRVDQVIQDLSLGKCQNTLigvpgRVKGLS 233
Cdd:PRK13549 333 QQAIAQGIAMVPEDrkrDGIVPVMGVGKNITLAALDRFTGGSRidDAAELKTILESIQRLKVKTASPEL-----AIARLS 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 234 GGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTihqpSSELFE---LFDKILLMAEGRV 310
Cdd:PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVI----SSELPEvlgLSDRVLVMHEGKL 483
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
101-318 |
2.13e-12 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 69.09 E-value: 2.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA-FRSSKGVQISpstvrllnghpIDAKEMQARCAYVQQDDLFIGSL 179
Cdd:PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAgFEQPTAGQIM-----------LDGVDLSHVPPYQRPINMMFQSY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLIFQAMVRMPRHTTKKQKIQRVDQVIQDLSLGKCQNTLIGVPGRvkgLSGGERKRLAFASEALTDPPLLICDEPT 259
Cdd:PRK11607 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ---LSGGQRQRVALARSLAKRPKLLLLDEPM 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 260 SGLDS----FMAHSVVQVLKKLsqkGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK11607 178 GALDKklrdRMQLEVVDILERV---GVTCVMVTHD-QEEAMTMAGRIAIMNRGKFVQIGEPEE 236
|
|
| YadH |
COG0842 |
ABC-type multidrug transport system, permease component [Defense mechanisms]; |
498-609 |
2.83e-12 |
|
ABC-type multidrug transport system, permease component [Defense mechanisms];
Pssm-ID: 440604 [Multi-domain] Cd Length: 200 Bit Score: 65.99 E-value: 2.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 498 YFLGKTIAELPLFLIVPLLFTAIAYPMIGLRPGIDHFLTALALVTLVANVSTSFGYLISCACSSTSMALSVGPPVIIPFL 577
Cdd:COG0842 48 ILLGKVLAYLLRGLLQALLVLLVALLFFGVPLRGLSLLLLLLVLLLFALAFSGLGLLISTLARSQEQASAISNLVILPLT 127
|
90 100 110
....*....|....*....|....*....|..
gi 618014015 578 LFGGFFLNSGSVPVYFKWLSYLSWFRYANEGL 609
Cdd:COG0842 128 FLSGAFFPIESLPGWLQAIAYLNPLTYFVEAL 159
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
101-323 |
3.48e-12 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 69.45 E-value: 3.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIafrssKGVQISPSTvrllNGHPIDAKEMQARCAYVQQDDlFIG--- 177
Cdd:TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVL-----RGMDQYEPT----SGRIIYHVALCEKCGYVERPS-KVGepc 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 -----SLTAREHLIFQAMVRMPRHTTKKQKI--QR----------VDQVIQDL---------SLGKCQNTL--IGVPGRV 229
Cdd:TIGR03269 83 pvcggTLEPEEVDFWNLSDKLRRRIRKRIAImlQRtfalygddtvLDNVLEALeeigyegkeAVGRAVDLIemVQLSHRI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 230 ----KGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKL-SQKGKTVILTIHQPSSeLFELFDKILL 304
Cdd:TIGR03269 163 thiaRDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAvKASGISMVLTSHWPEV-IEDLSDKAIW 241
|
250
....*....|....*....
gi 618014015 305 MAEGRVAFLGTPGEAVDFF 323
Cdd:TIGR03269 242 LENGEIKEEGTPDEVVAVF 260
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
100-287 |
3.55e-12 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 67.11 E-value: 3.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGVQISPSTVRLLNGHPI-----DAKEMQARCAYV-QQDD 173
Cdd:PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIysprtDTVDLRKEIGMVfQQPN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSltarehlIFQAMVRMPRHTTKKQKiQRVDQVIQdlslgkcqNTLIG--VPGRVK--------GLSGGERKRLAFA 243
Cdd:PRK14239 97 PFPMS-------IYENVVYGLRLKGIKDK-QVLDEAVE--------KSLKGasIWDEVKdrlhdsalGLSGGQQQRVCIA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 618014015 244 SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILT 287
Cdd:PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
113-310 |
4.51e-12 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 68.96 E-value: 4.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKT-TLLnaiafrsskgvqispSTVRLLNGHPIdakemqarcAYVQQDDLFIGS--LTAREH----- 184
Cdd:PRK15134 34 AGETLALVGESGSGKSvTAL---------------SILRLLPSPPV---------VYPSGDIRFHGEslLHASEQtlrgv 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 185 ------LIFQ-AMVRM-PRHTTKKQkiqrvdqVIQDLSL----------GKCQNTL--IGV---PGRVKG----LSGGER 237
Cdd:PRK15134 90 rgnkiaMIFQePMVSLnPLHTLEKQ-------LYEVLSLhrgmrreaarGEILNCLdrVGIrqaAKRLTDyphqLSGGER 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 238 KRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRV 310
Cdd:PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
101-316 |
5.81e-12 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 66.24 E-value: 5.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA----FRSSKGvQIspstvrLLNGHPIDAKEMQARcayvqqddlfi 176
Cdd:COG0396 13 KEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMghpkYEVTSG-SI------LLDGEDILELSPDER----------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 gsltARE--HLIFQAMVRMP--------RHTTKKQKIQRVDQViqdLSLGKCQNTLigvpGRVK------------GLSG 234
Cdd:COG0396 75 ----ARAgiFLAFQYPVEIPgvsvsnflRTALNARRGEELSAR---EFLKLLKEKM----KELGldedfldryvneGFSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 235 GERKRLAFASEALTDPPLLICDEPTSGLD--SFMAhsVVQVLKKLSQKGKTVILTIHQPssELFELF--DKILLMAEGRV 310
Cdd:COG0396 144 GEKKRNEILQMLLLEPKLAILDETDSGLDidALRI--VAEGVNKLRSPDRGILIITHYQ--RILDYIkpDFVHVLVDGRI 219
|
....*.
gi 618014015 311 AFLGTP 316
Cdd:COG0396 220 VKSGGK 225
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
104-310 |
6.16e-12 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 66.06 E-value: 6.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKGVQIspstvrlLNGHPID----AKEMQARCAYVQQDDLFIG 177
Cdd:PRK11614 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLcgDPRATSGRIV-------FDGKDITdwqtAKIMREAVAIVPEGRRVFS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHLIFQAMvrMPRHTTKKQKIQRVDQVIQDLSLGKCQntligvpgRVKGLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:PRK11614 94 RMTVEENLAMGGF--FAERDQFQERIKWVYELFPRLHERRIQ--------RAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSQKGKTVILtIHQPSSELFELFDKILLMAEGRV 310
Cdd:PRK11614 164 PSLGLAPIIIQQIFDTIEQLREQGMTIFL-VEQNANQALKLADRGYVLENGHV 215
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
100-291 |
7.60e-12 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 65.36 E-value: 7.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRsskgvqispstvrllnghpidAKEMQARCAYVQQDDLFIGSL 179
Cdd:COG2401 42 ERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGA---------------------LKGTPVAGCVDVPDNQFGREA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLifqamvrmPRHTTKKQKIQRVDQViqdlSLGKCQNTLigvpGRVKGLSGGERKRLAFASEALTDPPLLICDEPT 259
Cdd:COG2401 101 SLIDAI--------GRKGDFKDAVELLNAV----GLSDAVLWL----RRFKELSTGQKFRFRLALLLAERPKLLVIDEFC 164
|
170 180 190
....*....|....*....|....*....|...
gi 618014015 260 SGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQP 291
Cdd:COG2401 165 SHLDRQTAKRVARNLQKLARRaGITLVVATHHY 197
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
232-331 |
9.19e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 66.22 E-value: 9.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 232 LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGK-TVILTIHqpSSE-LFELFDKILLMAEGR 309
Cdd:PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNmTIILVSH--SMEdVAKLADRIIVMNKGK 222
|
90 100
....*....|....*....|....*
gi 618014015 310 VAFLGTPGEA---VDFFSYIGAQCP 331
Cdd:PRK13637 223 CELQGTPREVfkeVETLESIGLAVP 247
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
101-319 |
1.18e-11 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 67.91 E-value: 1.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskgvQISPS---TVRLLNGhpidakemqARCAYV-QQDDLFI 176
Cdd:COG4178 376 RPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIA-------GLWPYgsgRIARPAG---------ARVLFLpQRPYLPL 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLtaREHLIFqamvrmPrHTTKKQKIQRVDQVIQDLSLGKcqntLIGvpgRV-------KGLSGGERKRLAFASEALTD 249
Cdd:COG4178 440 GTL--REALLY------P-ATAEAFSDAELREALEAVGLGH----LAE---RLdeeadwdQVLSLGEQQRLAFARLLLHK 503
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 250 PPLLICDEPTSGLDSFMAHSVVQVLKKlSQKGKTVILTIHQPSseLFELFDKIL-LMAEGRVAFLGTPGEA 319
Cdd:COG4178 504 PDWLFLDEATSALDEENEAALYQLLRE-ELPGTTVISVGHRST--LAAFHDRVLeLTGDGSWQLLPAEAPA 571
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
99-337 |
1.27e-11 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 65.48 E-value: 1.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQiSPS--TVRLlNGHPIDAKEMQARCAY---VQ--- 170
Cdd:PRK10419 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLV-----GLE-SPSqgNVSW-RGEPLAKLNRAQRKAFrrdIQmvf 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 171 QDDlfIGSLTAREHLifQAMVRMP-RHTT---KKQKIQRVDQVIQ--DLSLGKCQNtligVPGRvkgLSGGERKRLAFAS 244
Cdd:PRK10419 96 QDS--ISAVNPRKTV--REIIREPlRHLLsldKAERLARASEMLRavDLDDSVLDK----RPPQ---LSGGQLQRVCLAR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 245 EALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTI-HQPSseLFELF-DKILLMAEGRVAFLGTPGEAVDF 322
Cdd:PRK10419 165 ALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFItHDLR--LVERFcQRVMVMDNGQIVETQPVGDKLTF 242
|
250
....*....|....*
gi 618014015 323 FSYIGAQCPNNYNPA 337
Cdd:PRK10419 243 SSPAGRVLQNAVLPA 257
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
102-316 |
1.42e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 65.53 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 102 HLLKNVSGVAYPGELLAVMGSSGAGKTTLL---NAIAFRSSKGVQISPSTVrllngHPIDAKEMQARCAYVQQD-DLFIG 177
Cdd:PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLlhlNGIYLPQRGRVKVMGREV-----NAENEKWVRSKVGLVFQDpDDQVF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHLIFQamvrmPRHT--TKKQKIQRVDQVIQDLSLGKCqntligvpgRVKG---LSGGERKRLAFASEALTDPPL 252
Cdd:PRK13647 94 SSTVWDDVAFG-----PVNMglDKDEVERRVEEALKAVRMWDF---------RDKPpyhLSYGQKKRVAIAGVLAMDPDV 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 253 LICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELfELFDKILLMAEGRVAFLGTP 316
Cdd:PRK13647 160 IVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA-EWADQVIVLKEGRVLAEGDK 222
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
104-315 |
1.82e-11 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 65.88 E-value: 1.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVA---YPGELLAVMGSSGAGKTTLLNAIAfrsskG-VQISPSTVRLLNGHPIDAKEMQARCAY--VQ---QDDL 174
Cdd:PRK15079 34 LKAVDGVTlrlYEGETLGVVGESGCGKSTFARAII-----GlVKATDGEVAWLGKDLLGMKDDEWRAVRsdIQmifQDPL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 F-------IGSLTAREHLIFQAmvRMPRHTTKkqkiQRVDQVIqdLSLGKCQNTLIGVPGRvkgLSGGERKRLAFASEAL 247
Cdd:PRK15079 109 AslnprmtIGEIIAEPLRTYHP--KLSRQEVK----DRVKAMM--LKVGLLPNLINRYPHE---FSGGQCQRIGIARALI 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 248 TDPPLLICDEPTSGLDSFMAHSVVQVLKKLsQK--GKTVILTIHQPSSeLFELFDKILLMAEGRVAFLGT 315
Cdd:PRK15079 178 LEPKLIICDEPVSALDVSIQAQVVNLLQQL-QRemGLSLIFIAHDLAV-VKHISDRVLVMYLGHAVELGT 245
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
101-318 |
3.19e-11 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 65.74 E-value: 3.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPIDAKEMQARcaYV----QQDDLFi 176
Cdd:PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA-----GFETPDSGRIMLDGQDITHVPAENR--HVntvfQSYALF- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHLIFQamVRMPRhtTKKQKIQRvdQVIQDLSLGKCQNTligVPGRVKGLSGGERKRLAFASEALTDPPLLICD 256
Cdd:PRK09452 99 PHMTVFENVAFG--LRMQK--TPAAEITP--RVMEALRMVQLEEF---AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK09452 170 ESLSALDYKLRKQMQNELKALQRKlGITFVFVTHD-QEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
104-318 |
3.49e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 64.42 E-value: 3.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTL---LNAIafrsskgvqISPSTVRL-LNGHPIDAKemqarcayvqQDDLFIGSL 179
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLiqnINAL---------LKPTTGTVtVDDITITHK----------TKDKYIRPV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLIFQamvrMPRHTTKKQKIQR------------VDQVIQD-----LSLGKCQNTLIGVPGRvkgLSGGERKRLAF 242
Cdd:PRK13646 84 RKRIGMVFQ----FPESQLFEDTVEReiifgpknfkmnLDEVKNYahrllMDLGFSRDVMSQSPFQ---MSGGQMRKIAI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 243 ASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLS-QKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHD-MNEVARYADEVIVMKEGSIVSQTSPKE 232
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
101-289 |
3.85e-11 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 61.31 E-value: 3.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGVQISPSTVRLlnghpidakemqarcAYVQQddlfigs 178
Cdd:cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAgeLEPDEGIVTWGSTVKI---------------GYFEQ------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 ltarehlifqamvrmprhttkkqkiqrvdqviqdlslgkcqntligvpgrvkgLSGGERKRLAFASEALTDPPLLICDEP 258
Cdd:cd03221 71 -----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP 97
|
170 180 190
....*....|....*....|....*....|.
gi 618014015 259 TSGLDSFMAHSVVQVLKKLSQkgkTVILTIH 289
Cdd:cd03221 98 TNHLDLESIEALEEALKEYPG---TVILVSH 125
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
106-310 |
4.14e-11 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 63.79 E-value: 4.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 106 NVSGVAYPGELLAVMGSSGAGKTTLLNAIA-----------FRSSKGV-----QISPSTVRLLnghpidakeMQARCAYV 169
Cdd:PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSarlapdagevhYRMRDGQlrdlyALSEAERRRL---------LRTEWGFV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 170 QQD--DLFIGSLTA----REHLifqaMVRMPRH-----TTKKQKIQRVDqviqdlslgkcqntlIGvPGRVKGL----SG 234
Cdd:PRK11701 95 HQHprDGLRMQVSAggniGERL----MAVGARHygdirATAGDWLERVE---------------ID-AARIDDLpttfSG 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 618014015 235 GERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKL-SQKGKTVILTIHQPS-SELfeLFDKILLMAEGRV 310
Cdd:PRK11701 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLvRELGLAVVIVTHDLAvARL--LAHRLLVMKQGRV 230
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
104-318 |
7.49e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 63.50 E-value: 7.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTL---LNAIAFRSSKGVQISpSTVRLLNGHPIDAKEMQARCAYVQQddlFigslt 180
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLlqhLNGLLQPTSGTVTIG-ERVITAGKKNKKLKPLRKKVGIVFQ---F----- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 181 aREHLIFQAMVR-------MPRHTTKKQKIQRVDQVIQdlslgkcqntLIGVPGRVKG-----LSGGERKRLAFASEALT 248
Cdd:PRK13634 94 -PEHQLFEETVEkdicfgpMNFGVSEEDAKQKAREMIE----------LVGLPEELLArspfeLSGGQMRRVAIAGVLAM 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 249 DPPLLICDEPTSGLDSFMAHSVVQVLKKLSQ-KGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKeKGLTTVLVTHS-MEDAARYADQIVVMHKGTVFLQGTPRE 232
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
103-290 |
8.71e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 61.89 E-value: 8.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDakemQARCAYvQQDDLFIG--- 177
Cdd:PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAglLNPEKG-EI------LFERQSIK----KDLCTY-QKQLCFVGhrs 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 ----SLTAREHLIFQAmvrmprHTTKKQkiQRVDQVIQDLSLGKcqntLIGVPGRVkgLSGGERKRLAFASEALTDPPLL 253
Cdd:PRK13540 84 ginpYLTLRENCLYDI------HFSPGA--VGITELCRLFSLEH----LIDYPCGL--LSSGQKRQVALLRLWMSKAKLW 149
|
170 180 190
....*....|....*....|....*....|....*..
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQ 290
Cdd:PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
114-315 |
1.04e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 65.38 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAFrsskgvQISPSTVRLLnghpidakEMQARCAYVQQDDlFIGSLTAREHLIFQAMVRM 193
Cdd:PLN03232 643 GSLVAIVGGTGEGKTSLISAMLG------ELSHAETSSV--------VIRGSVAYVPQVS-WIFNATVRENILFGSDFES 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 194 PRHttkkQKIQRVDQVIQDLSLGKCQN-TLIGVPGrvKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQ 272
Cdd:PLN03232 708 ERY----WRAIDVTALQHDLDLLPGRDlTEIGERG--VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 618014015 273 VLKKLSQKGKTVILTIHQpsSELFELFDKILLMAEGRVAFLGT 315
Cdd:PLN03232 782 SCMKDELKGKTRVLVTNQ--LHFLPLMDRIILVSEGMIKEEGT 822
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
107-318 |
1.05e-10 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 62.70 E-value: 1.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 107 VSGVA---YPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDAKEMQ--ARCAYV---QQDDLFi 176
Cdd:PRK11300 21 VNNVNlevREQEIVSLIGPNGAGKTTVFNCLTgfYKPTGG-TI------LLRGQHIEGLPGHqiARMGVVrtfQHVRLF- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHL-----------IFQAMVRMPRH-TTKKQKIQRVDQVIQDLSLGKCQNtligvpgRVKG-LSGGERKRLAFA 243
Cdd:PRK11300 93 REMTVIENLlvaqhqqlktgLFSGLLKTPAFrRAESEALDRAATWLERVGLLEHAN-------RQAGnLAYGQQRRLEIA 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 244 SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
104-344 |
1.07e-10 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 64.28 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTT---LLNAIafrsskgvqISPSTVR-LLNGHPIdAKEMQARCAYVQQDDLfigsl 179
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTmvrLLNRL---------IEPTRGQvLIDGVDI-AKISDAELREVRRKKI----- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 tareHLIFQAMVRMPRHTTKKQKI-----------QRVDQVIQDLSLGKCQNTLIGVPGRvkgLSGGERKRLAFASEALT 248
Cdd:PRK10070 109 ----AMVFQSFALMPHMTVLDNTAfgmelaginaeERREKALDALRQVGLENYAHSYPDE---LSGGMRQRVGLARALAI 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 249 DPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGEAVDffsyiga 328
Cdd:PRK10070 182 NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN------- 254
|
250
....*....|....*.
gi 618014015 329 qcpnnyNPADFYVQVL 344
Cdd:PRK10070 255 ------NPANDYVRTF 264
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
113-303 |
1.79e-10 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 60.07 E-value: 1.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIAFrsskgvqispstvrllnghpidakemqarcayvqqddlfigsltarehLIFQAMVR 192
Cdd:cd03227 20 EGSLTIITGPNGSGKSTILDAIGL------------------------------------------------ALGGAQSA 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 193 MPRHTTKKQKIQRVDQVIqdlslgkcqnTLIGVpgrVKGLSGGERKR----LAFASEALTDPPLLICDEPTSGLDSFMAH 268
Cdd:cd03227 52 TRRRSGVKAGCIVAAVSA----------ELIFT---RLQLSGGEKELsalaLILALASLKPRPLYILDEIDRGLDPRDGQ 118
|
170 180 190
....*....|....*....|....*....|....*
gi 618014015 269 SVVQVLKKLSQKGKTVILTIHQPssELFELFDKIL 303
Cdd:cd03227 119 ALAEAILEHLVKGAQVIVITHLP--ELAELADKLI 151
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
114-318 |
1.93e-10 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 63.12 E-value: 1.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAfrsskGVQiSPSTVRLLnghpIDAKEMQarcaYVQQDDLFIGsltarehLIFQAMVRM 193
Cdd:PRK11000 29 GEFVVFVGPSGCGKSTLLRMIA-----GLE-DITSGDLF----IGEKRMN----DVPPAERGVG-------MVFQSYALY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 194 PRHT-------------TKKQKI-QRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPT 259
Cdd:PRK11000 88 PHLSvaenmsfglklagAKKEEInQRVNQVAEVLQLAHLLDR------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 260 SGLDSFMAhsvVQV---LKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK11000 162 SNLDAALR---VQMrieISRLHKRlGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLE 220
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
107-318 |
2.04e-10 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 61.49 E-value: 2.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 107 VSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVrLLNGHPI---DAKEMQARCAYV--QQDDLFIGSlta 181
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMA-----GLLPGSGSI-QFAGQPLeawSAAELARHRAYLsqQQTPPFAMP--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 182 rehlIFQAMVR-MPRHTTKKQKIQRVDQVIQDLSLGKCQNTLIGvpgrvkGLSGGE--RKRLAFA-----SEALTDPPLL 253
Cdd:PRK03695 86 ----VFQYLTLhQPDKTRTEAVASALNEVAEALGLDDKLGRSVN------QLSGGEwqRVRLAAVvlqvwPDINPAGQLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELfDKILLMAEGRVAFLGTPGE 318
Cdd:PRK03695 156 LLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHA-DRVWLLKQGKLLASGRRDE 219
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
104-286 |
2.58e-10 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 63.12 E-value: 2.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPI------DAkeMQARCAYVQQDDLF 175
Cdd:COG3845 21 NDDVSLTVRPGEIHALLGENGAGKSTLMKILYglYQPDSG-EI------LIDGKPVrirsprDA--IALGIGMVHQHFML 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 IGSLTAREHLIFQAMVRMPRHTTKKQKIQRVDQVIQDLSLgkcqntliGVP--GRVKGLSGGERKRLafasE---AL-TD 249
Cdd:COG3845 92 VPNLTVAENIVLGLEPTKGGRLDRKAARARIRELSERYGL--------DVDpdAKVEDLSVGEQQRV----EilkALyRG 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 618014015 250 PPLLICDEPTSGL-----DSFMAhsvvqVLKKLSQKGKTVIL 286
Cdd:COG3845 160 ARILILDEPTAVLtpqeaDELFE-----ILRRLAAEGKSIIF 196
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
114-318 |
2.71e-10 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 62.43 E-value: 2.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAfrsskGVQiSPSTVRLLnghpIDAKEMQARCayVQQDDLFIgsltarehlIFQAMVRM 193
Cdd:PRK11432 32 GTMVTLLGPSGCGKTTVLRLVA-----GLE-KPTEGQIF----IDGEDVTHRS--IQQRDICM---------VFQSYALF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 194 PrHTT---------------KKQKIQRVDQVIQDLSLGkcqntliGVPGR-VKGLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:PRK11432 91 P-HMSlgenvgyglkmlgvpKEERKQRVKEALELVDLA-------GFEDRyVDQISGGQQQRVALARALILKPKVLLFDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK11432 163 PLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
105-321 |
2.72e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 63.15 E-value: 2.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 105 KNVSGVAYPGELLAVMGSSGAGKTTLLNAI-AFRSSKGVQIspstvrLLNGHPIDAKEMQARCA----YV----QQDDLF 175
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLyGLRPARGGRI------MLNGKEINALSTAQRLArglvYLpedrQSSGLY 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 --------IGSLTARehlifqamvRMPRHTTKKQKIQRVDQVIQDLSLgKCQNtligVPGRVKGLSGGERKRLAFASEAL 247
Cdd:PRK15439 354 ldaplawnVCALTHN---------RRGFWIKPARENAVLERYRRALNI-KFNH----AEQAARTLSGGNQQKVLIAKCLE 419
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 248 TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTihqpSSELFE---LFDKILLMAEGRVAFLgTPGEAVD 321
Cdd:PRK15439 420 ASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFI----SSDLEEieqMADRVLVMHQGEISGA-LTGAAIN 491
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
95-310 |
2.83e-10 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 61.23 E-value: 2.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 95 HIPAprkhllknvsgvaypGELLAVMGSSGAGKTTLLNAIAfrsskGVQiSPSTVRLLNGhpidakemQARCAYVQQDdl 174
Cdd:PRK11247 34 HIPA---------------GQFVAVVGRSGCGKSTLLRLLA-----GLE-TPSAGELLAG--------TAPLAEARED-- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 figsltarEHLIFQAMVRMPrhtTKKqkiqrvdqVIQDLSLG-------KCQNTL--IGVPGRVK----GLSGGERKRLA 241
Cdd:PRK11247 83 --------TRLMFQDARLLP---WKK--------VIDNVGLGlkgqwrdAALQALaaVGLADRANewpaALSGGQKQRVA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 242 FASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRV 310
Cdd:PRK11247 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQhGFTVLLVTHD-VSEAVAMADRVLLIEEGKI 212
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
103-318 |
3.35e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 61.41 E-value: 3.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFrsskgvQISPSTVRLlnghpidakEMQARCAYVQQDDlFIGSLTAR 182
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG------ELEPSEGKI---------KHSGRISFSSQFS-WIMPGTIK 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 183 EHLIFQAMVRMPRHttkkQKIQRVDQVIQDLS-LGKCQNTLIGVPGRVkgLSGGERKRLAFASEALTDPPLLICDEPTSG 261
Cdd:cd03291 116 ENIIFGVSYDEYRY----KSVVKACQLEEDITkFPEKDNTVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFGY 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 262 LDSFMAHSVVQ--VLKKLSQkgKTVILTIHQpsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:cd03291 190 LDVFTEKEIFEscVCKLMAN--KTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSE 244
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
103-358 |
3.83e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 63.39 E-value: 3.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFrsskgvQISPSTVRLlnghpidakEMQARCAYVQQDDlFIGSLTAR 182
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG------ELEPSEGKI---------KHSGRISFSPQTS-WIMPGTIK 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 183 EHLIFQAMVRMPRHTTkkqkIQRVDQVIQDLS-LGKCQNTLIGVPGRVkgLSGGERKRLAFASEALTDPPLLICDEPTSG 261
Cdd:TIGR01271 505 DNIIFGLSYDEYRYTS----VIKACQLEEDIAlFPEKDKTVLGEGGIT--LSGGQRARISLARAVYKDADLYLLDSPFTH 578
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 262 LDSFMAHSVVQ--VLKKLSQKGKTVILTihqpSSELFELFDKILLMAEGRVAFLGTpgeavdfFSYIGAQCPnnynpaDF 339
Cdd:TIGR01271 579 LDVVTEKEIFEscLCKLMSNKTRILVTS----KLEHLKKADKILLLHEGVCYFYGT-------FSELQAKRP------DF 641
|
250 260
....*....|....*....|.
gi 618014015 340 YVQVLAVVP--GREAESRDRI 358
Cdd:TIGR01271 642 SSLLLGLEAfdNFSAERRNSI 662
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
114-321 |
4.13e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 63.43 E-value: 4.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAFRSSKgvqispstvrlLNGHpidaKEMQARCAYVQQDdLFIGSLTAREHLIFQAMVRM 193
Cdd:TIGR00957 664 GALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGH----VHMKGSVAYVPQQ-AWIQNDSLRENILFGKALNE 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 194 PRHttkkQKIQRVDQVIQDLS-LGKCQNTLIGVPGrvKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQ 272
Cdd:TIGR00957 728 KYY----QQVLEACALLPDLEiLPSGDRTEIGEKG--VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 801
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 618014015 273 --VLKKLSQKGKTVILTIHQPSseLFELFDKILLMAEGRVAFLGTPGEAVD 321
Cdd:TIGR00957 802 hvIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELLQ 850
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
103-315 |
5.38e-10 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 60.43 E-value: 5.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskgvqispstvrllnGHPidakemqarcAY--VQQDDLFIGS-- 178
Cdd:CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA------------------GHP----------AYkiLEGDILFKGEsi 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 --LTA--REH----LIFQAMVRMPRHTTK---------KQKIQRVDQV--IQDLSLGKCQNTLIGVPGRV------KGLS 233
Cdd:CHL00131 74 ldLEPeeRAHlgifLAFQYPIEIPGVSNAdflrlaynsKRKFQGLPELdpLEFLEIINEKLKLVGMDPSFlsrnvnEGFS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 234 GGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPssELFELF--DKILLMAEGRVA 311
Cdd:CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ--RLLDYIkpDYVHVMQNGKII 231
|
....
gi 618014015 312 FLGT 315
Cdd:CHL00131 232 KTGD 235
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
84-311 |
6.52e-10 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 62.05 E-value: 6.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 84 NRVKGVLCNERHIPAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIaF----RSSKGVQISPSTVR-------LL 152
Cdd:PRK10982 244 NKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETL-FgireKSAGTITLHGKKINnhnaneaIN 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 153 NGHPIDAKEMQARCAYVQQDDLFiGSLTARehlIFQAMVRMPRHTTKKQKiQRVDQVIQDLSLGK-CQNTLIGvpgrvkG 231
Cdd:PRK10982 323 HGFALVTEERRSTGIYAYLDIGF-NSLISN---IRNYKNKVGLLDNSRMK-SDTQWVIDSMRVKTpGHRTQIG------S 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 232 LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTihqpSSELFELF---DKILLMAEG 308
Cdd:PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIII----SSEMPELLgitDRILVMSNG 467
|
...
gi 618014015 309 RVA 311
Cdd:PRK10982 468 LVA 470
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
104-310 |
6.85e-10 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 61.96 E-value: 6.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQiSPS--TVRlLNG------HPIDAKEmqARCAYVQQD--- 172
Cdd:COG1129 20 LDGVSLELRPGEVHALLGENGAGKSTLMKILS-----GVY-QPDsgEIL-LDGepvrfrSPRDAQA--AGIAIIHQElnl 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 --DL------FIGSLTAREHLI-FQAMVRMPRhttkkQKIQRV------DQVIQDLSLGKCQNTLIgvpgrVKGLSgger 237
Cdd:COG1129 91 vpNLsvaeniFLGREPRRGGLIdWRAMRRRAR-----ELLARLgldidpDTPVGDLSVAQQQLVEI-----ARALS---- 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 238 krlafasealTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRV 310
Cdd:COG1129 157 ----------RDARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHR-LDEVFEIADRVTVLRDGRL 218
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
101-315 |
9.15e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 62.06 E-value: 9.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNA----IAFRSSKGVQIspstvrllnghpidakemQARCAYVQQDDlFI 176
Cdd:PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAmlgeLPPRSDASVVI------------------RGTVAYVPQVS-WI 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHLIFQAmvrmPRHTTKKQKIQRVDQVIQDLSL--GKCQnTLIGVPGrvKGLSGGERKRLAFASEALTDPPLLI 254
Cdd:PLN03130 691 FNATVRDNILFGS----PFDPERYERAIDVTALQHDLDLlpGGDL-TEIGERG--VNISGGQKQRVSMARAVYSNSDVYI 763
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 255 CDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpsSELFELFDKILLMAEGRVAFLGT 315
Cdd:PLN03130 764 FDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQ--LHFLSQVDRIILVHEGMIKEEGT 822
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
103-303 |
1.42e-09 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 57.55 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGVQISPSTVRLLnghpidakemqarcaYVQQDDLF-IGSL 179
Cdd:cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAglWPWGSGRIGMPEGEDLL---------------FLPQRPYLpLGTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 taREHLIFqamvrmprhttkkqkiqrvdqviqdlslgkcqntligvP-GRVkgLSGGERKRLAFASEALTDPPLLICDEP 258
Cdd:cd03223 81 --REQLIY--------------------------------------PwDDV--LSGGEQQRLAFARLLLHKPKFVFLDEA 118
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 618014015 259 TSGLDSFMAHSVVQVLKKLsqkGKTVILTIHQPSseLFELFDKIL 303
Cdd:cd03223 119 TSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVL 158
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
104-318 |
1.50e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 59.38 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISPSTVRLLNGHPIDA---KEMQARCAYVQQ--DDLFIGS 178
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMI-----GIEKVKSGEIFYNNQAITDdnfEKLRKHIGIVFQnpDNQFVGS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTArehliFQAMVRMPRHTTKKQKIQR-VDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:PRK13648 100 IVK-----YDVAFGLENHAVPYDEMHRrVSEALKQVDMLERADY------EPNALSGGQKQRVAIAGVLALNPSVIILDE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 258 PTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELfDKILLMAEGRVAFLGTPGE 318
Cdd:PRK13648 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEA-DHVIVMNKGTVYKEGTPTE 228
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
232-323 |
1.66e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 59.36 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 232 LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVA 311
Cdd:PRK13643 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL-MDDVADYADYVYLLEKGHII 223
|
90
....*....|....*
gi 618014015 312 FLGTPGEA---VDFF 323
Cdd:PRK13643 224 SCGTPSDVfqeVDFL 238
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
104-285 |
1.79e-09 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 58.60 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLN-----------AIAFRSSKG----VQISPSTVRLLNGHPIdakemqarcAY 168
Cdd:COG4778 27 LDGVSFSVAAGECVALTGPSGAGKSTLLKciygnylpdsgSILVRHDGGwvdlAQASPREILALRRRTI---------GY 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 169 VQQddlFigsLTArehlifqamvrMPRHTTkkqkiqrVDQVIQDL---------SLGKCQNTL--IGVPGRVKGL----- 232
Cdd:COG4778 98 VSQ---F---LRV-----------IPRVSA-------LDVVAEPLlergvdreeARARARELLarLNLPERLWDLppatf 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 618014015 233 SGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVI 285
Cdd:COG4778 154 SGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAII 206
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
103-289 |
1.87e-09 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 58.57 E-value: 1.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskgVQISPSTVRLL-NGHPIDA---KEMQARCAYVQQDDLFIGS 178
Cdd:PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVA------SLISPTSGTLLfEGEDISTlkpEIYRQQVSYCAQTPTLFGD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 lTAREHLIFQAMVRmprhttkKQKIQRvDQVIQDLS-LGKCQNTLigvPGRVKGLSGGERKRLAFASEALTDPPLLICDE 257
Cdd:PRK10247 96 -TVYDNLIFPWQIR-------NQQPDP-AIFLDDLErFALPDTIL---TKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163
|
170 180 190
....*....|....*....|....*....|...
gi 618014015 258 PTSGLDSFMAHSVVQVLKKL-SQKGKTVILTIH 289
Cdd:PRK10247 164 ITSALDESNKHNVNEIIHRYvREQNIAVLWVTH 196
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
104-318 |
3.17e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 58.69 E-value: 3.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLL---NAIAFRSSKGVQISPSTVRLLNGHPiDAKEMQARCAYVQQ---DDLFig 177
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMqhfNALLKPSSGTITIAGYHITPETGNK-NLKKLRKKVSLVFQfpeAQLF-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 sltarEHLIFQAMVRMPRH---TTKKQKIQRVDQVIQdlslgkcqntlIGVPGRVKG-----LSGGERKRLAFASEALTD 249
Cdd:PRK13641 100 -----ENTVLKDVEFGPKNfgfSEDEAKEKALKWLKK-----------VGLSEDLISkspfeLSGGQMRRVAIAGVMAYE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 250 PPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK13641 164 PEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN-MDDVAEYADDVLVLEHGKLIKHASPKE 231
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
113-263 |
3.82e-09 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 57.17 E-value: 3.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQISpstvrlLNGHPIDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAM 190
Cdd:PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAglLHVESG-QIQ------IDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCG 108
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 191 V--RMPRHTTkkqkiqrvDQVIQDLSLGKCQNTLigvpgrVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLD 263
Cdd:PRK13543 109 LhgRRAKQMP--------GSALAIVGLAGYEDTL------VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
113-289 |
4.70e-09 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 57.19 E-value: 4.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIAfrsskGVQiSPSTVRLL-NGHPIdAKEMQARCAYVQQDdlfIGSLTAREHLIFQAMV 191
Cdd:PRK10908 27 PGEMAFLTGHSGAGKSTLLKLIC-----GIE-RPSAGKIWfSGHDI-TRLKNREVPFLRRQ---IGMIFQDHHLLMDRTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 192 ----RMP---RHTTKKQKIQRVDQVIQDLSL-GKCQNTLIGvpgrvkgLSGGERKRLAFASEALTDPPLLICDEPTSGLD 263
Cdd:PRK10908 97 ydnvAIPliiAGASGDDIRRRVSAALDKVGLlDKAKNFPIQ-------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
170 180
....*....|....*....|....*.
gi 618014015 264 SFMAHSVVQVLKKLSQKGKTVILTIH 289
Cdd:PRK10908 170 DALSEGILRLFEEFNRVGVTVLMATH 195
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
229-318 |
5.31e-09 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 57.71 E-value: 5.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 229 VKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSeLFELFDKILLMAEG 308
Cdd:PRK13638 134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL-IYEISDAVYVLRQG 212
|
90
....*....|
gi 618014015 309 RVAFLGTPGE 318
Cdd:PRK13638 213 QILTHGAPGE 222
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
96-322 |
5.87e-09 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 55.79 E-value: 5.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 96 IPAPRKHLLKNVSgVAYP-GELLAVMGSSGAGKTTLLNAIAFRSSKGVQISpstvrllnghpidakemqARCAYVQQDDL 174
Cdd:cd03238 3 VSGANVHNLQNLD-VSIPlNVLVVVTGVSGSGKSTLVNEGLYASGKARLIS------------------FLPKFSRNKLI 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLtarehlifQAMVRMPrhttkkqkiqrvdqvIQDLSLGKCQNTLigvpgrvkglSGGERKRLAFASEALTDPP--L 252
Cdd:cd03238 64 FIDQL--------QFLIDVG---------------LGYLTLGQKLSTL----------SGGELQRVKLASELFSEPPgtL 110
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 253 LICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPssELFELFDKILLMAEGRvaflGTPGEAVDF 322
Cdd:cd03238 111 FILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL--DVLSSADWIIDFGPGS----GKSGGKVVF 174
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
97-324 |
6.85e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 57.50 E-value: 6.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 97 PAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTT---LLNAIAFRSSkgvqiSPSTVRLLNGHPIDAKEM---QARCAYVQ 170
Cdd:PRK13640 16 PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTiskLINGLLLPDD-----NPNSKITVDGITLTAKTVwdiREKVGIVF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 171 Q--DDLFIGSlTAREHLIFQAMVR-MPRhtTKKQKIqrVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEAL 247
Cdd:PRK13640 91 QnpDNQFVGA-TVGDDVAFGLENRaVPR--PEMIKI--VRDVLADVGMLDYIDS------EPANLSGGQKQRVAIAGILA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 248 TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELfELFDKILLMAEGRVAFLGTPgeaVDFFS 324
Cdd:PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSP---VEIFS 232
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
232-318 |
8.56e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 57.33 E-value: 8.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 232 LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRV 310
Cdd:PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEyKKRIIMVTHN-MDQVLRIADEVIVMHEGKV 229
|
....*...
gi 618014015 311 AFLGTPGE 318
Cdd:PRK13645 230 ISIGSPFE 237
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
103-291 |
8.71e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 56.84 E-value: 8.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIafrsSKGVQISP-STVR---LLNGHPI---DAKEMQARCAYVQQDDLF 175
Cdd:PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF----NRLIELYPeARVSgevYLDGQDIfkmDVIELRRRVQMVFQIPNP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 IGSLTAREHLIFQamVRMPRHTTKKQKIQ-RVDQVIQDLSL-GKCQNTLIGVPGRvkgLSGGERKRLAFASEALTDPPLL 253
Cdd:PRK14247 94 IPNLSIFENVALG--LKLNRLVKSKKELQeRVRWALEKAQLwDEVKDRLDAPAGK---LSGGQQQRLCIARALAFQPEVL 168
|
170 180 190
....*....|....*....|....*....|....*...
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLsQKGKTVILTIHQP 291
Cdd:PRK14247 169 LADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFP 205
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
102-308 |
1.12e-08 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 58.26 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 102 HLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--AFRSSKGVQIspstvrlLNGH------PIDAKEMQARCAYvqQDD 173
Cdd:PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLsgIHEPTKGTIT-------INNInynkldHKLAAQLGIGIIY--QEL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSLTAREHLIfqamvrMPRHTTKK---------QKIQRVDQVIQD-LSLGKCQNTLIGvpgrvkGLSGGERKRLAFA 243
Cdd:PRK09700 90 SVIDELTVLENLY------IGRHLTKKvcgvniidwREMRVRAAMMLLrVGLKVDLDEKVA------NLSISHKQMLEIA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 244 SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEG 308
Cdd:PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK-LAEIRRICDRYTVMKDG 221
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
99-289 |
1.35e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 58.02 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQISpstvrlLNGhpiDAKEMQ-ARCAYVQQDDLFIG 177
Cdd:TIGR03719 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA-----GVDKD------FNG---EARPQPgIKVGYLPQEPQLDP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHlIFQAMvrmprhTTKKQKIQRVDQVIQDLS--------LGKCQNTLIGV-----------------------P 226
Cdd:TIGR03719 82 TKTVREN-VEEGV------AEIKDALDRFNEISAKYAepdadfdkLAAEQAELQEIidaadawdldsqleiamdalrcpP 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 227 G--RVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDsfmAHSVVQVLKKLSQKGKTVILTIH 289
Cdd:TIGR03719 155 WdaDVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD---AESVAWLERHLQEYPGTVVAVTH 216
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
99-310 |
1.87e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 57.49 E-value: 1.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIaFRSSKGVQISpSTVrLLNGHPID----AKEMQARCAYVQQDdl 174
Cdd:NF040905 271 PERKVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSV-FGRSYGRNIS-GTV-FKDGKEVDvstvSDAIDAGLAYVTED-- 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 figsltaREH--LIFQAMVRmpRHTT--KKQKIQR---VDQVIQDLSLGKCQNTL-IGVPG---RVKGLSGGERKRLAFA 243
Cdd:NF040905 346 -------RKGygLNLIDDIK--RNITlaNLGKVSRrgvIDENEEIKVAEEYRKKMnIKTPSvfqKVGNLSGGNQQKVVLS 416
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 244 SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTihqpSSELFELF---DKILLMAEGRV 310
Cdd:NF040905 417 KWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVI----SSELPELLgmcDRIYVMNEGRI 482
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
101-318 |
2.31e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 55.82 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIafrsSKGVQISPSTVRllnghpIDAKEMqarcaYVQQDDLFIGSLT 180
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL----NRLIEIYDSKIK------VDGKVL-----YFGKDIFQIDAIK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 181 AREH--LIFQAMVRMPR-------------HTTK-KQKIQR-VDQVIQDLSLGKCQNTLIGVPGrvKGLSGGERKRLAFA 243
Cdd:PRK14246 88 LRKEvgMVFQQPNPFPHlsiydniayplksHGIKeKREIKKiVEECLRKVGLWKEVYDRLNSPA--SQLSGGQQQRLTIA 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 244 SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLsQKGKTVILTIHQPsSELFELFDKILLMAEGRVAFLGTPGE 318
Cdd:PRK14246 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNE 238
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
97-290 |
2.71e-08 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 56.35 E-value: 2.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 97 PAPRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAF--RSSKGvQIspstvrLLNGHPI---DAKEM-QARcayvQ 170
Cdd:PRK11153 14 GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLleRPTSG-RV------LVDGQDLtalSEKELrKAR----R 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 171 QddlfIGsltarehLIFQ-----------AMVRMP---RHTTKKQKIQRVDQVIQDLSLGKCQNTLigvPGRvkgLSGGE 236
Cdd:PRK11153 83 Q----IG-------MIFQhfnllssrtvfDNVALPlelAGTPKAEIKARVTELLELVGLSDKADRY---PAQ---LSGGQ 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 237 RKRLAFAsEAL-TDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQ 290
Cdd:PRK11153 146 KQRVAIA-RALaSNPKVLLCDEATSALDPATTRSILELLKDINRElGLTIVLITHE 200
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
104-316 |
2.78e-08 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 54.73 E-value: 2.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIaFRSSK---------GVQISPstvrllnghpIDAKEMQARCAYVQQDD- 173
Cdd:cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILAL-FRFLEaeegkieidGIDIST----------IPLEDLRSSLTIIPQDPt 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSLtarehlifqamvrmpRHTTKKQKIQRVDQVIQDLSlgkcqntligVPGRVKGLSGGERKRLAFASEALTDPPLL 253
Cdd:cd03369 93 LFSGTI---------------RSNLDPFDEYSDEEIYGALR----------VSEGGLNLSQGQRQLLCLARALLKRPRVL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSQKgkTVILTIHQPSSELFElFDKILLMAEGRVAFLGTP 316
Cdd:cd03369 148 VLDEATASIDYATDALIQKTIREEFTN--STILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
232-318 |
6.05e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 54.71 E-value: 6.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 232 LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELfDKILLMAEGRV 310
Cdd:PRK13633 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKyGITIILITHY-MEEAVEA-DRIIVMDSGKV 222
|
....*...
gi 618014015 311 AFLGTPGE 318
Cdd:PRK13633 223 VMEGTPKE 230
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
232-322 |
6.32e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 54.75 E-value: 6.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 232 LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGRVA 311
Cdd:PRK13649 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL-MDDVANYADFVYVLEKGKLV 224
|
90
....*....|....
gi 618014015 312 FLGTPGEA---VDF 322
Cdd:PRK13649 225 LSGKPKDIfqdVDF 238
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
114-293 |
7.53e-08 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 54.12 E-value: 7.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAI-AFrsskgVQISPSTVRLLnGHPIDAKEMQARCAYVQQDDLFIGSLTarehLIFQAMVR 192
Cdd:PRK15056 33 GSIAALVGVNGSGKSTLFKALmGF-----VRLASGKISIL-GQPTRQALQKNLVAYVPQSEEVDWSFP----VLVEDVVM 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 193 MPRH-------TTKKQKIQRVDQVIQDLSLGKCQNTLIGvpgrvkGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSF 265
Cdd:PRK15056 103 MGRYghmgwlrRAKKRDRQIVTAALARVDMVEFRHRQIG------ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVK 176
|
170 180
....*....|....*....|....*...
gi 618014015 266 MAHSVVQVLKKLSQKGKTVILTIHQPSS 293
Cdd:PRK15056 177 TEARIISLLRELRDEGKTMLVSTHNLGS 204
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
103-320 |
1.05e-07 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 54.81 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVA---YPGELLAVMGSSGAGKTTLLNAIA--FRSSKG---VQISPSTVRLLNGHPIDAKEMQARCAYVQQD-D 173
Cdd:TIGR03269 296 VVKAVDNVSlevKEGEIFGIVGTSGAGKTTLSKIIAgvLEPTSGevnVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEyD 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSlTAREHLIFQAMVRMPRHTTKKQKIQRVDQViqDLSLGKCQNTLIGVPGRvkgLSGGERKRLAFASEALTDPPLL 253
Cdd:TIGR03269 376 LYPHR-TVLDNLTEAIGLELPDELARMKAVITLKMV--GFDEEKAEEILDKYPDE---LSEGERHRVALAQVLIKEPRIV 449
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 254 ICDEPTSGLDSF----MAHSVVQVLKKLSQkgkTVILTIHQPSSELfELFDKILLMAEGRVAFLGTPGEAV 320
Cdd:TIGR03269 450 ILDEPTGTMDPItkvdVTHSILKAREEMEQ---TFIIVSHDMDFVL-DVCDRAALMRDGKIVKIGDPEEIV 516
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
104-321 |
1.19e-07 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 54.90 E-value: 1.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskgvqispsTVRLLNGHPIDAKEMQARCAYVQQDDlfiGSLTARE 183
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIA------------GVTMPNKGTVDIKGSAALIAISSGLN---GQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 184 HLIFQAMVRmprhTTKKQKIQRV-DQVIQDLSLGKcqntLIGVPgrVKGLSGGERKRLAFASEALTDPPLLICDEPTSGL 262
Cdd:PRK13545 105 NIELKGLMM----GLTKEKIKEIiPEIIEFADIGK----FIYQP--VKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 263 DSFMAHSVVQVLKKLSQKGKTvILTIHQPSSELFELFDKILLMAEGRVAFLGTPGEAVD 321
Cdd:PRK13545 175 DQTFTKKCLDKMNEFKEQGKT-IFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
104-315 |
1.34e-07 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 54.86 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTtlLNAIAF-----RSSKGVQISPSTVRLLNGHPIDAKEM-QARCAYVQQDDLfig 177
Cdd:PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKS--VTALALmrlleQAGGLVQCDKMLLRRRSRQVIELSEQsAAQMRHVRGADM--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 sltareHLIFQA-----------------MVRMPRHTTKKQKIQRVDQVIQDLSLGKCQNTLIGVPGRvkgLSGGERKRL 240
Cdd:PRK10261 107 ------AMIFQEpmtslnpvftvgeqiaeSIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ---LSGGMRQRV 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 241 AFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGT 315
Cdd:PRK10261 178 MIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
178-328 |
1.61e-07 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 53.97 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHLIfqaMVRMPRHTTKKQKIQRVDQVIQDLSLGKcqntligVPGRVKG-LSGGERKRLAFASEALTDPPLLICD 256
Cdd:NF000106 100 SFSGRENLY---MIGR*LDLSRKDARARADELLERFSLTE-------AAGRAAAkYSGGMRRRLDLAASMIGRPAVLYLD 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 257 EPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIH------QPSSELfELFDKILLMAEGRVAFLGT----------PGEAV 320
Cdd:NF000106 170 EPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQymeeaeQLAHEL-TVIDRGRVIADGKVDELKTkvggrtlqirPAHAA 248
|
....*...
gi 618014015 321 DFFSYIGA 328
Cdd:NF000106 249 ELDRMVGA 256
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
114-324 |
1.73e-07 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 53.59 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTT---------------LLNAIAFRSSKGVQISPSTVRLLNGhpidakemqARCAYVQQDDLfiGS 178
Cdd:PRK11022 33 GEVVGIVGESGSGKSVsslaimglidypgrvMAEKLEFNGQDLQRISEKERRNLVG---------AEVAMIFQDPM--TS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTAREHLIFQAMVRMPRHT--TKKQKIQRVDQVIqdlslgkcqnTLIGVP---GRVK----GLSGGERKRLAFASEALTD 249
Cdd:PRK11022 102 LNPCYTVGFQIMEAIKVHQggNKKTRRQRAIDLL----------NQVGIPdpaSRLDvyphQLSGGMSQRVMIAMAIACR 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 250 PPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAflgTPGEAVDFFS 324
Cdd:PRK11022 172 PKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV---ETGKAHDIFR 243
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
103-263 |
1.91e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 54.13 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAiafrsskgvqispstvrLLNGHPIDAKEMQ----ARCAYVQQD--DLFI 176
Cdd:PRK15064 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRT-----------------LVGELEPDSGTVKwsenANIGYYAQDhaYDFE 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTarehlIFQAMV--RMPRHTtkkqkiqrvDQVIQDLsLGKCQNTLIGVPGRVKGLSGGERKRLAFASEALTDPPLLI 254
Cdd:PRK15064 397 NDLT-----LFDWMSqwRQEGDD---------EQAVRGT-LGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461
|
....*....
gi 618014015 255 CDEPTSGLD 263
Cdd:PRK15064 462 MDEPTNHMD 470
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
233-354 |
3.47e-07 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 52.80 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 233 SGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAF 312
Cdd:PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 618014015 313 LGTpgeAVDFFsyigaqcpnnYNPADFY-VQVLAVVPGREAES 354
Cdd:PRK09473 243 YGN---ARDVF----------YQPSHPYsIGLLNAVPRLDAEG 272
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
104-311 |
3.73e-07 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 53.38 E-value: 3.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSG--VAYP-------GELLAVMGSSGAGKTTLLNAI--AFRSSKG-VQISPSTVRLLNghPIDA------------ 159
Cdd:PRK11288 260 LDGLKGpgLREPisfsvraGEIVGLFGLVGAGRSELMKLLygATRRTAGqVYLDGKPIDIRS--PRDAiragimlcpedr 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 160 -KEMQARCAYVQqDDLFIgslTAREHLIFQAMVRMPRhttkkQKIQRVDQVIQDLSlgkcqntlIGVPGR---VKGLSGG 235
Cdd:PRK11288 338 kAEGIIPVHSVA-DNINI---SARRHHLRAGCLINNR-----WEAENADRFIRSLN--------IKTPSReqlIMNLSGG 400
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 236 ERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTihqpSSELFE---LFDKILLMAEGRVA 311
Cdd:PRK11288 401 NQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFV----SSDLPEvlgVADRIVVMREGRIA 475
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
232-289 |
4.19e-07 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 53.68 E-value: 4.19e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 232 LSGGERKRLAFASEALT---DPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIH 289
Cdd:PRK00635 810 LSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
48-263 |
4.45e-07 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 52.43 E-value: 4.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 48 SPPSPTLTADNLTyswynldvfgaVHQPGSGwkQLLNRVKGVLcnerhipaprkhllKNVSGVA---YPGELLAVMGSSG 124
Cdd:COG4608 2 AMAEPLLEVRDLK-----------KHFPVRG--GLFGRTVGVV--------------KAVDGVSfdiRRGETLGLVGESG 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 125 AGKTTLLNAIafrsskgvqispstVRLL---------NGHPI---DAKEMQARCAYVQ---QDDLfiGSLTarehlifqa 189
Cdd:COG4608 55 CGKSTLGRLL--------------LRLEeptsgeilfDGQDItglSGRELRPLRRRMQmvfQDPY--ASLN--------- 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 190 mvrmPRHT---------------TKKQKIQRVDQVIQdlslgkcqntligvpgRVkGL------------SGGERKRLAF 242
Cdd:COG4608 110 ----PRMTvgdiiaeplrihglaSKAERRERVAELLE----------------LV-GLrpehadryphefSGGQRQRIGI 168
|
250 260
....*....|....*....|..
gi 618014015 243 AsEAL-TDPPLLICDEPTSGLD 263
Cdd:COG4608 169 A-RALaLNPKLIVCDEPVSALD 189
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
100-292 |
4.71e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 51.77 E-value: 4.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIafrsSKGVQISPST-----VRLLN----GHPIDAKEMQARCAYVQ 170
Cdd:PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTF----NRLLELNEEArvegeVRLFGrniySPDVDPIEVRREVGMVF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 171 QDDLFIGSLTAREH----LIFQAMVRmprhtTKKQKIQRVDQVIQDLSL-GKCQNTLIGVPGRvkgLSGGERKRLAFASE 245
Cdd:PRK14267 92 QYPNPFPHLTIYDNvaigVKLNGLVK-----SKKELDERVEWALKKAALwDEVKDRLNDYPSN---LSGGQRQRLVIARA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 618014015 246 ALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLsQKGKTVILTIHQPS 292
Cdd:PRK14267 164 LAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPA 209
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
104-309 |
7.78e-07 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 52.22 E-value: 7.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVQIsPSTVRLLnghpIDAKEMQ---------ARCAYVQQ--- 171
Cdd:PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILS-----GNYQ-PDAGSIL----IDGQEMRfasttaalaAGVAIIYQelh 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 172 --------DDLFIGSLTAREHLIfqamvrmprhtTKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFA 243
Cdd:PRK11288 90 lvpemtvaENLYLGQLPHKGGIV-----------NRRLLNYEAREQLEHLGVDIDPDT------PLKYLSIGQRQMVEIA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 244 SEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKtVILTIHQPSSELFELFDKILLMAEGR 309
Cdd:PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGR-VILYVSHRMEEIFALCDAITVFKDGR 217
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
497-599 |
1.09e-06 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 51.24 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 497 TYFLGKTIAELPLFLIVPLLFTAIAYpmiGLRPGIDHFLTALALVTLVANVSTSFGYLISCACSSTSMALSVGPPVIIPF 576
Cdd:pfam12698 204 QYWLGKILGDFLVGLLQLLIILLLLF---GIGIPFGNLGLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSIIGIVILLL 280
|
90 100
....*....|....*....|...
gi 618014015 577 LLFGGFFLNSGSVPVYFKWLSYL 599
Cdd:pfam12698 281 SGFFGGLFPLEDPPSFLQWIFSI 303
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
101-310 |
1.22e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 50.48 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSgVAYPGE-LLAVMGSSGAGKTTLLNAIAFRSSKGVQISPSTVRLLNGHPI----DAKEMQARCAYV-QQDDL 174
Cdd:PRK14271 34 KTVLDQVS-MGFPARaVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIfnyrDVLEFRRRVGMLfQRPNP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 175 FIGSLTAREHLIFQAMVRMPRHTTKKQKIQRVDQV-IQDlslgKCQNTLIGVPGRvkgLSGGERKRLAFASEALTDPPLL 253
Cdd:PRK14271 113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVgLWD----AVKDRLSDSPFR---LSGGQQQLLCLARTLAVNPEVL 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 254 ICDEPTSGLDSFMAHSVVQVLKKLSQKgKTVILTIHQpSSELFELFDKILLMAEGRV 310
Cdd:PRK14271 186 LLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHN-LAQAARISDRAALFFDGRL 240
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
99-270 |
1.38e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 51.27 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGV-QISPSTVRLLNGhpidakemqARCAYVQQDDLFIG 177
Cdd:PRK11819 18 PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA-----GVdKEFEGEARPAPG---------IKVGYLPQEPQLDP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 178 SLTAREHlIFQAMvrmprhTTKKQKIQRVDQVIQDLSL------------GKCQNTLIGVPG------------------ 227
Cdd:PRK11819 84 EKTVREN-VEEGV------AEVKAALDRFNEIYAAYAEpdadfdalaaeqGELQEIIDAADAwdldsqleiamdalrcpp 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 618014015 228 ---RVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDsfmAHSV 270
Cdd:PRK11819 157 wdaKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD---AESV 199
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
166-304 |
1.83e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 51.57 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 166 CAYVQQDDLFIGSLTAREHLIFQAMV----RMPRHTTKKQKIQR------VDQVIQdlSLGKCQNTLIGVPGrvKGLSGG 235
Cdd:PTZ00265 1287 CDYNLKDLRNLFSIVSQEPMLFNMSIyeniKFGKEDATREDVKRackfaaIDEFIE--SLPNKYDTNVGPYG--KSLSGG 1362
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 236 ERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTI-HQPSSelFELFDKILL 304
Cdd:PTZ00265 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIaHRIAS--IKRSDKIVV 1430
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
103-310 |
1.86e-06 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 49.70 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGVQISPSTVrLLNGHPIDAKEMQAR-CAYVQQD--DLFIGSL 179
Cdd:PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV-LLDGKPVAPCALRGRkIATIMQNprSAFNPLH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHlifqamvrmPRHTTKKQKIQRVDQVIQDlslgkcqnTLIGV----PGRVKGL-----SGGERKRLAFASEALTDP 250
Cdd:PRK10418 97 TMHTH---------ARETCLALGKPADDATLTA--------ALEAVglenAARVLKLypfemSGGMLQRMMIALALLCEA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 618014015 251 PLLICDEPTSGLDSFMAHSVVQVLKKLSQK-GKTVILTIHQpSSELFELFDKILLMAEGRV 310
Cdd:PRK10418 160 PFIIADEPTTDLDVVAQARILDLLESIVQKrALGMLLVTHD-MGVVARLADDVAVMSHGRI 219
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
103-315 |
2.03e-06 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 50.35 E-value: 2.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 103 LLKNVSGVAY---PGELLAVMGSSGAGKTTL---LNAIAfrsskgvqiSPSTVRL-LNGH------PIDAKEMQARCAYV 169
Cdd:PRK11308 27 LVKALDGVSFtleRGKTLAVVGESGCGKSTLarlLTMIE---------TPTGGELyYQGQdllkadPEAQKLLRQKIQIV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 170 QQDDLfiGSLTarehlifqamvrmPRHT------------TKKQKIQRVDQVIQDLSlgkcqntligvpgRVkGL----- 232
Cdd:PRK11308 98 FQNPY--GSLN-------------PRKKvgqileepllinTSLSAAERREKALAMMA-------------KV-GLrpehy 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 233 -------SGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLM 305
Cdd:PRK11308 149 dryphmfSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM 228
|
250
....*....|
gi 618014015 306 AEGRVAFLGT 315
Cdd:PRK11308 229 YLGRCVEKGT 238
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
101-315 |
2.19e-06 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 50.87 E-value: 2.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIA--FRSSKGvQIspstvrLLNGHPIDAKEMQA---RCAYVQQDDLF 175
Cdd:PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMgyYPLTEG-EI------RLDGRPLSSLSHSVlrqGVAMVQQDPVV 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 176 IGSltarehlIFQAMVRMPRHTTKKQKIQRVDQV-----IQDLSLGkcQNTLIGVPGrvKGLSGGERKRLAFASEALTDP 250
Cdd:PRK10790 427 LAD-------TFLANVTLGRDISEEQVWQALETVqlaelARSLPDG--LYTPLGEQG--NNLSVGQKQLLALARVLVQTP 495
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 618014015 251 PLLICDEPTSGLDSFMAHSVVQVLKKLSQkgKTVILTIHQPSSELFELfDKILLMAEGRVAFLGT 315
Cdd:PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIVEA-DTILVLHRGQAVEQGT 557
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
104-289 |
2.34e-06 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 49.43 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIafrsskGVQISPSTVRLlnghpidakEMQARCAYVQQDDLFIGSLTARE 183
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNII------GGSLSPTVGKV---------DRNGEVSVIAISAGLSGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 184 HLIFQaMVRMprHTTKKQKIQRVDQVIQDLSLGKcqntLIGVPgrVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLD 263
Cdd:PRK13546 105 NIEFK-MLCM--GFKRKEIKAMTPKIIEFSELGE----FIYQP--VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175
|
170 180
....*....|....*....|....*.
gi 618014015 264 SFMAHSVVQVLKKLSQKGKTVILTIH 289
Cdd:PRK13546 176 QTFAQKCLDKIYEFKEQNKTIFFVSH 201
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
232-318 |
4.35e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 50.21 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 232 LSGGERKRLAFASE--ALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpsSELFELFDKILLMAE-- 307
Cdd:PRK00635 477 LSGGEQERTALAKHlgAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD--EQMISLADRIIDIGPga 554
|
90
....*....|....*
gi 618014015 308 ----GRVAFLGTPGE 318
Cdd:PRK00635 555 gifgGEVLFNGSPRE 569
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
100-263 |
4.90e-06 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 48.57 E-value: 4.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLnaiafRSSKGVqISPSTVRLLNGHPIdakemqaRCAYVQQDDlfigSL 179
Cdd:PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLV-----RVVLGL-VAPDEGVIKRNGKL-------RIGYVPQKL----YL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLIFQAMVRMpRHTTKKQKIQRVDQVIQdlslgkcQNTLIGVPgrVKGLSGGERKRLAFASEALTDPPLLICDEPT 259
Cdd:PRK09544 79 DTTLPLTVNRFLRL-RPGTKKEDILPALKRVQ-------AGHLIDAP--MQKLSGGETQRVLLARALLNRPQLLVLDEPT 148
|
....
gi 618014015 260 SGLD 263
Cdd:PRK09544 149 QGVD 152
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
113-305 |
6.33e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 46.60 E-value: 6.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 113 PGELLAVMGSSGAGKTTLLNAIAfrsskgvqispstvRLLNghpidakEMQARCAYVQQDDLFIGSLTAREHlifqamvr 192
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALA--------------RELG-------PPGGGVIYIDGEDILEEVLDQLLL-------- 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 193 mprhttkkqkiqrvdqviqdlslgkcqntlIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQ 272
Cdd:smart00382 52 ------------------------------IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLL 101
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 618014015 273 ------VLKKLSQKGKTVILTIHQP----SSELFELFDKILLM 305
Cdd:smart00382 102 leelrlLLLLKSEKNLTVILTTNDEkdlgPALLRRRFDRRIVL 144
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
205-289 |
8.00e-06 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 49.01 E-value: 8.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 205 RVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTV 284
Cdd:COG1245 192 KLDELAEKLGLENILDR------DISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEEGKYV 265
|
....*
gi 618014015 285 ILTIH 289
Cdd:COG1245 266 LVVEH 270
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
232-292 |
9.94e-06 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 48.15 E-value: 9.94e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 618014015 232 LSGGERKRLAFAS---EALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPS 292
Cdd:pfam13304 237 LSDGTKRLLALLAallSALPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHSPL 300
|
|
| ABC2_membrane_7 |
pfam19055 |
ABC-2 type transporter; |
289-344 |
1.13e-05 |
|
ABC-2 type transporter;
Pssm-ID: 465963 [Multi-domain] Cd Length: 409 Bit Score: 48.36 E-value: 1.13e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 289 HQPSSELFELFDK-ILLMAEGRVAFLGTPGEAVDFFSYIGAQCPNNYNPADFYVQVL 344
Cdd:pfam19055 1 HQPSYTLFKMFDDlILLAKGGLTVYHGPVKKVEEYFAGLGINVPERVNPPDHFIDIL 57
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
114-320 |
2.62e-05 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 46.52 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAfrsskgVQISPSTVRL-LNGHPID---AKEMQARCAYVQQDDLFIGSLTAREHLIFQA 189
Cdd:PRK10253 33 GHFTAIIGPNGCGKSTLLRTLS------RLMTPAHGHVwLDGEHIQhyaSKEVARRIGLLAQNATTPGDITVQELVARGR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 190 MVRMPRHTT-KKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAH 268
Cdd:PRK10253 107 YPHQPLFTRwRKEDEEAVTKAMQATGITHLADQ------SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 618014015 269 SVVQVLKKLS-QKGKTVILTIHQpSSELFELFDKILLMAEGRVAFLGTPGEAV 320
Cdd:PRK10253 181 DLLELLSELNrEKGYTLAAVLHD-LNQACRYASHLIALREGKIVAQGAPKEIV 232
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
114-290 |
3.16e-05 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 45.78 E-value: 3.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAI--AFRSSKGVQISPSTVRLLNGHPIDAKEMQARCAYVQQDDLFIGSlTAREHLIFQAmv 191
Cdd:cd03290 27 GQLTMIVGQVGCGKSSLLLAIlgEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA-TVEENITFGS-- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 192 rmprhTTKKQKIQRVDQV------IQDLSLGkcQNTLIGVPGrvKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSF 265
Cdd:cd03290 104 -----PFNKQRYKAVTDAcslqpdIDLLPFG--DQTEIGERG--INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIH 174
|
170 180
....*....|....*....|....*..
gi 618014015 266 MAHSVVQ--VLKKLSQKGKTVILTIHQ 290
Cdd:cd03290 175 LSDHLMQegILKFLQDDKRTLVLVTHK 201
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
228-286 |
3.24e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 46.93 E-value: 3.24e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 228 RVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVIL 286
Cdd:PRK10938 132 RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL 190
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
100-263 |
7.52e-05 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 45.83 E-value: 7.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 100 RKHLLKNVSGVAYPGELLAVMGSSGAGKT-TLLnaiafrsskgvqispSTVRLLnghPIDAKEMQARCAYVQQDDLfigS 178
Cdd:COG4172 22 TVEAVKGVSFDIAAGETLALVGESGSGKSvTAL---------------SILRLL---PDPAAHPSGSILFDGQDLL---G 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 LTARE---------HLIFQ-AMVRM-PRHTTKKQkIQRVDQVIQDLSLGKCQN------TLIGVP---GRVKG----LSG 234
Cdd:COG4172 81 LSERElrrirgnriAMIFQePMTSLnPLHTIGKQ-IAEVLRLHRGLSGAAARAralellERVGIPdpeRRLDAyphqLSG 159
|
170 180
....*....|....*....|....*....
gi 618014015 235 GERKRLAFASEALTDPPLLICDEPTSGLD 263
Cdd:COG4172 160 GQRQRVMIAMALANEPDLLIADEPTTALD 188
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
104-309 |
8.87e-05 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 45.59 E-value: 8.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 104 LKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAFRSSKGvqiSPSTVRLLNGHPIDAKEM----QARCAYVQQDDLFIGSL 179
Cdd:TIGR02633 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG---TWDGEIYWSGSPLKASNIrdteRAGIVIIHQELTLVPEL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 180 TAREHLIFQAMVRMP-RHTTKKQKIQRVDQVIQDLSLGKCQNTLigvpgRVKGLSGGERKRLAFASEALTDPPLLICDEP 258
Cdd:TIGR02633 94 SVAENIFLGNEITLPgGRMAYNAMYLRAKNLLRELQLDADNVTR-----PVGDYGGGQQQLVEIAKALNKQARLLILDEP 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 618014015 259 TSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpSSELFELFDKILLMAEGR 309
Cdd:TIGR02633 169 SSSLTEKETEILLDIIRDLKAHGVACVYISHK-LNEVKAVCDTICVIRDGQ 218
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
99-263 |
9.35e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 45.71 E-value: 9.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 99 PRKHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskgVQISPSTVRLLNGHPIDAkemqarcAYVQQddlfigs 178
Cdd:PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLML------GQLQADSGRIHCGTKLEV-------AYFDQ------- 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 179 ltAREHLifqamvrMPRHTtkkqkiqrvdqVIQDLSLGKCQNTLIGV--------------PGR----VKGLSGGERKRL 240
Cdd:PRK11147 390 --HRAEL-------DPEKT-----------VMDNLAEGKQEVMVNGRprhvlgylqdflfhPKRamtpVKALSGGERNRL 449
|
170 180
....*....|....*....|...
gi 618014015 241 AFASEALTDPPLLICDEPTSGLD 263
Cdd:PRK11147 450 LLARLFLKPSNLLILDEPTNDLD 472
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
226-317 |
1.02e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 43.71 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 226 PGRVKgLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLm 305
Cdd:cd03222 67 PQYID-LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHV- 144
|
90
....*....|..
gi 618014015 306 aegrvaFLGTPG 317
Cdd:cd03222 145 ------FEGEPG 150
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
205-289 |
1.14e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 45.18 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 205 RVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSqKGKTV 284
Cdd:PRK13409 192 KLDEVVERLGLENILDR------DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-EGKYV 264
|
....*
gi 618014015 285 ILTIH 289
Cdd:PRK13409 265 LVVEH 269
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
202-289 |
1.46e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 45.00 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 202 KIQRVDQVIQDLSLGKCQntlIGVPgrVKGLSGGERKRLAFASEAL---TDPPLLICDEPTSGLDSFMAHSVVQVLKKLS 278
Cdd:TIGR00630 805 SISRKLQTLCDVGLGYIR---LGQP--ATTLSGGEAQRIKLAKELSkrsTGRTLYILDEPTTGLHFDDIKKLLEVLQRLV 879
|
90
....*....|.
gi 618014015 279 QKGKTVILTIH 289
Cdd:TIGR00630 880 DKGNTVVVIEH 890
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
108-289 |
1.94e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 44.39 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 108 SGVAYPGELLAVMGSSGAGKTTLLNAIAfrsskGVqISPstvrllnghpiDAKEM--QARCAY----VQQDdlfiGSLTA 181
Cdd:COG1245 360 GGEIREGEVLGIVGPNGIGKTTFAKILA-----GV-LKP-----------DEGEVdeDLKISYkpqyISPD----YDGTV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 182 REHLifqAMVRMPRHTTKKQKiqrvDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPTSG 261
Cdd:COG1245 419 EEFL---RSANTDDFGSSYYK----TEIIKPLGLEKLLDK------NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 485
|
170 180
....*....|....*....|....*....
gi 618014015 262 LDSFMAHSVVQVLKKLS-QKGKTVILTIH 289
Cdd:COG1245 486 LDVEQRLAVAKAIRRFAeNRGKTAMVVDH 514
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
114-289 |
2.70e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 44.08 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAFRSSKGVqisPSTVRLLN------GHPIDA--------------KEMQARCAyVQQDD 173
Cdd:PLN03073 203 GRHYGLVGRNGTGKTTFLRYMAMHAIDGI---PKNCQILHveqevvGDDTTAlqcvlntdiertqlLEEEAQLV-AQQRE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 174 LFIGSLTAREHLIFQAMVRMPRHTTKKQKI-QRVDQVIQDLSLGKCQNTLIGVP-------GRVKGLSGGERKRLAFASE 245
Cdd:PLN03073 279 LEFETETGKGKGANKDGVDKDAVSQRLEEIyKRLELIDAYTAEARAASILAGLSftpemqvKATKTFSGGWRMRIALARA 358
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 618014015 246 ALTDPPLLICDEPTSGLDsfmAHSVVQVLKKLSQKGKTVILTIH 289
Cdd:PLN03073 359 LFIEPDLLLLDEPTNHLD---LHAVLWLETYLLKWPKTFIVVSH 399
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
121-303 |
3.35e-04 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 42.21 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 121 GSSGAGKTTLLNAIAF-------RSSKGVQISPSTVRllnghpidakemqarcayvqqddlfIGSLTAREHLIFqamvrm 193
Cdd:cd03240 29 GQNGAGKTTIIEALKYaltgelpPNSKGGAHDPKLIR-------------------------EGEVRAQVKLAF------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 194 pRHTTKKQ-KIQR----VDQVI---QDLSlgkcqNTLIgvPGRVKGLSGGERK------RLAFAsEALTDP-PLLICDEP 258
Cdd:cd03240 78 -ENANGKKyTITRslaiLENVIfchQGES-----NWPL--LDMRGRCSGGEKVlasliiRLALA-ETFGSNcGILALDEP 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 618014015 259 TSGLDSF-MAHSVVQVLKK-LSQKGKTVILTIHQPssELFELFDKIL 303
Cdd:cd03240 149 TTNLDEEnIEESLAEIIEErKSQKNFQLIVITHDE--ELVDAADHIY 193
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
114-318 |
4.26e-04 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 42.87 E-value: 4.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIA---------------FRSSKGVQISPSTVRLLNGHPIDA--KEMQArCayvqqddlfi 176
Cdd:PRK15093 33 GEIRGLVGESGSGKSLIAKAICgvtkdnwrvtadrmrFDDIDLLRLSPRERRKLVGHNVSMifQEPQS-C---------- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 gsLTAREHLIFQAMVRMPRHTTKKQKIQRVD-----------QV-IQD-----------LSLGKCQNTLIGVpgrvkgls 233
Cdd:PRK15093 102 --LDPSERVGRQLMQNIPGWTYKGRWWQRFGwrkrraiellhRVgIKDhkdamrsfpyeLTEGECQKVMIAI-------- 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 234 ggerkrlAFASEaltdPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFL 313
Cdd:PRK15093 172 -------ALANQ----PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240
|
....*
gi 618014015 314 GTPGE 318
Cdd:PRK15093 241 APSKE 245
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
232-318 |
4.57e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 43.46 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 232 LSGGERKRLAFASE---ALTDpPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQPssELFELFDKILLMAE- 307
Cdd:TIGR00630 489 LSGGEAQRIRLATQigsGLTG-VLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEHDE--DTIRAADYVIDIGPg 565
|
90
....*....|....*.
gi 618014015 308 -----GRVAFLGTPGE 318
Cdd:TIGR00630 566 agehgGEVVASGTPEE 581
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
114-328 |
4.81e-04 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 42.91 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 114 GELLAVMGSSGAGKTTLLNAIAfrsskGV-QISPSTVRLlNGHPIDAKEMQAR-CAYVQQDDLFIGSLTAREHLIFQAMV 191
Cdd:PRK11650 30 GEFIVLVGPSGCGKSTLLRMVA-----GLeRITSGEIWI-GGRVVNELEPADRdIAMVFQNYALYPHMSVRENMAYGLKI 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 192 R-MPRHTTKkqkiQRVDQVIQDLSLGKcqnTLIGVPgrvKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDsfmAHSV 270
Cdd:PRK11650 104 RgMPKAEIE----ERVAEAARILELEP---LLDRKP---RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD---AKLR 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 618014015 271 VQV---LKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGE-----AVDFF-SYIGA 328
Cdd:PRK11650 171 VQMrleIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEvyekpASTFVaSFIGS 237
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
101-263 |
5.43e-04 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 42.33 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 101 KHLLKNVSGVAYPGELLAVMGSSGAGKTTLLNAI--------AFRSSkGvQIspstvrLLNGHPIDAKEMqarcayvqqd 172
Cdd:COG1117 24 KQALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrmndlipGARVE-G-EI------LLDGEDIYDPDV---------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 173 DLFigSLTAREHLIFQ-------------AM-VRMPRHTTKKQKIQRVDQVIQDLSLgkcqntligvPGRVK-------- 230
Cdd:COG1117 86 DVV--ELRRRVGMVFQkpnpfpksiydnvAYgLRLHGIKSKSELDEIVEESLRKAAL----------WDEVKdrlkksal 153
|
170 180 190
....*....|....*....|....*....|....
gi 618014015 231 GLSGGERKRLAFAsEAL-TDPPLLICDEPTSGLD 263
Cdd:COG1117 154 GLSGGQQQRLCIA-RALaVEPEVLLMDEPTSALD 186
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
198-289 |
6.14e-04 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 41.97 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 198 TKKQKIQRVDQVIQDLSLGKCQNTligvpgRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKL 277
Cdd:cd03236 112 KKKDERGKLDELVDQLELRHVLDR------NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL 185
|
90
....*....|..
gi 618014015 278 SQKGKTVILTIH 289
Cdd:cd03236 186 AEDDNYVLVVEH 197
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
232-291 |
6.27e-04 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 41.86 E-value: 6.27e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 232 LSGGERKRLAFASE---ALTDPpLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQP 291
Cdd:cd03270 138 LSGGEAQRIRLATQigsGLTGV-LYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE 199
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
117-315 |
8.52e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 42.54 E-value: 8.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 117 LAVMGSSGAGKTTLLNAIA----------FRSSKgVQISpstvrLLNGHPIDAKEMQ-------ARC---AYVQQDDLFI 176
Cdd:PLN03073 538 IAMVGPNGIGKSTILKLISgelqpssgtvFRSAK-VRMA-----VFSQHHVDGLDLSsnpllymMRCfpgVPEQKLRAHL 611
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 177 GSLTAREHLIFQAMVRmprhttkkqkiqrvdqviqdlslgkcqntligvpgrvkgLSGGERKRLAFASEALTDPPLLICD 256
Cdd:PLN03073 612 GSFGVTGNLALQPMYT---------------------------------------LSGGQKSRVAFAKITFKKPHILLLD 652
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 257 EPTSGLDSFMAHSVVQVLkKLSQKGktvILTIHQPSSELFELFDKILLMAEGRVA-FLGT 315
Cdd:PLN03073 653 EPSNHLDLDAVEALIQGL-VLFQGG---VLMVSHDEHLISGSVDELWVVSEGKVTpFHGT 708
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
188-263 |
1.28e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 188 QAMVRMPRH---TTK-KQKIQRVDQVIQDLSLGKCQNTLI---GVPGRVKGLSGGERK------RLAFASEALTDPPLLI 254
Cdd:PRK01156 751 PAMIRKSASqamTSLtRKYLFEFNLDFDDIDVDQDFNITVsrgGMVEGIDSLSGGEKTavafalRVAVAQFLNNDKSLLI 830
|
....*....
gi 618014015 255 CDEPTSGLD 263
Cdd:PRK01156 831 MDEPTAFLD 839
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
202-285 |
1.45e-03 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 41.94 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 202 KIQRVDQVIQD-----LSLGKCQNTLigvpgrvkglSGGERKRLAFASEaL----TDPPLLICDEPTSGLdsfmaHS--- 269
Cdd:COG0178 802 KIARKLQTLQDvglgyIKLGQPATTL----------SGGEAQRVKLASE-LskrsTGKTLYILDEPTTGL-----HFhdi 865
|
90
....*....|....*...
gi 618014015 270 --VVQVLKKLSQKGKTVI 285
Cdd:COG0178 866 rkLLEVLHRLVDKGNTVV 883
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
232-289 |
2.14e-03 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 40.41 E-value: 2.14e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 618014015 232 LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGK-TVILTIH 289
Cdd:PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSElTMVIVSH 209
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
229-303 |
2.72e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 618014015 229 VKGLSGGERK------RLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILTIHQpssELFELFDKI 302
Cdd:COG4717 556 VEELSRGTREqlylalRLALAELLAGEPLPLILDDAFVNFDDERLRAALELLAELAKGRQVIYFTCHE---ELVELFQEE 632
|
.
gi 618014015 303 L 303
Cdd:COG4717 633 G 633
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
232-287 |
4.00e-03 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 39.77 E-value: 4.00e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 618014015 232 LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLSQKGKTVILT 287
Cdd:PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVT 207
|
|
| YjeQ_EngC |
cd01854 |
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; ... |
114-135 |
6.18e-03 |
|
Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.
Pssm-ID: 206747 [Multi-domain] Cd Length: 211 Bit Score: 38.53 E-value: 6.18e-03
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
228-289 |
8.87e-03 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 39.41 E-value: 8.87e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 618014015 228 RVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHSVVQVLKKLS-QKGKTVILTIH 289
Cdd:PRK13409 450 NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAeEREATALVVDH 512
|
|
| |
