|
Name |
Accession |
Description |
Interval |
E-value |
| Rabaptin |
pfam03528 |
Rabaptin; |
11-452 |
0e+00 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 677.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 11 DEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAVMKETVRDYEHQFH 90
Cdd:pfam03528 46 EEDLKRQNAVLQEAQVELDALQNQLALARAEMENIKAVATVSENTKQEAIDEVKSQWQEEVASLQAIMKETVREYEVQFH 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 91 LRLEQERTQWAQYRESAEREIADLRRRLSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELE 170
Cdd:pfam03528 126 RRLEQERAQWNQYRESAEREIADLRRRLSEGQEEENLEDEMKKAQEDAEKLRSVVMPMEKEIAALKAKLTEAEDKIKELE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 171 ASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRL 250
Cdd:pfam03528 206 ASKMKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 251 LMRDMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIPVVCALTQEESSAQLSNEEEHLDSTRG 330
Cdd:pfam03528 286 LMRDMQRMESVLTSEQLRQVEEIKKKDQEEHKRARTHKEKETLKSDREHTVSIHAVFSPAGVETSAPLSNVEEQINSAHG 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 331 SVHSLDAGLLLPSGDPFSKSDnDMFKDGLRRAQSTDSLGTSGSLQSKALGYNYKAKSAGNLDESDFGPLVGADSVSENFD 410
Cdd:pfam03528 366 SVHSLDTDVVLGAGDSFNKQE-DPFKEGLRRAQSTDSLGSSSSLQHKFLGHNQKAKSAGNLDESDFGPLVGADSVSENFD 444
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 615276234 411 TASLGSLQMPSGFMLTKDQERAIKAMTPEQEETASLLSSVTQ 452
Cdd:pfam03528 445 TSSLGSLKMPSGFMLTKDQEKAIKAMTPEQEETASLLSSVTQ 486
|
|
| Rab5-bind |
pfam09311 |
Rabaptin-like protein; Members of this family are predominantly found in Rabaptin and allow ... |
490-796 |
3.81e-120 |
|
Rabaptin-like protein; Members of this family are predominantly found in Rabaptin and allow for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes.
Pssm-ID: 462752 [Multi-domain] Cd Length: 307 Bit Score: 365.06 E-value: 3.81e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 490 CDMCSNYEKQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEE 569
Cdd:pfam09311 1 CDMCSNYEKQLQAIQEQEAETRDQVKKLQEMLRQANDQLEKTMKDKKELEDKMNQLSEETSNQVSTLAKRNQKSETLLDE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 570 LQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQQAEDFILPDTTEALRELVLKYREDIINVR 649
Cdd:pfam09311 81 LQQAFSQAKRNFQDQLAVLMDSREQVSDELVRLQKDNESLQGKHSLHVSLQQAEKFDMPDTVQELQELVLKYREELIEVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 650 TAADHVEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESL 729
Cdd:pfam09311 161 TAADHMEEKLKAEILFLKEQIQAEQCLKENLEETLQAEIENCKEEIASISSLKVELERIKAEKEQLENGLTEKIRQLEDL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 615276234 730 QEIKISLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQAD 796
Cdd:pfam09311 241 QTTKGSLETQLKKETNEKAAVEQLVFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQAD 307
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
91-799 |
2.20e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 2.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 91 LRLEQERTQWAQYRESAEREIadlrrrlsegQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELE 170
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAE----------EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 171 ASKV-------------KELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTW 237
Cdd:TIGR02168 302 QQKQilrerlanlerqlEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 238 QKAND---QFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIPVVCALTQ--- 311
Cdd:TIGR02168 382 ETLRSkvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERlee 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 312 --EESSAQLSNEEEHLDSTRGSVHSLDAGL-----LLPSGDPFSKSDNDMFKDGLRRAQSTDSLGTSGSLQSK------- 377
Cdd:TIGR02168 462 alEELREELEEAEQALDAAERELAQLQARLdslerLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaiea 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 378 ALGYNYKA----------KSAGNLDESDFGPLV--GADSVSENFDTASLG-SLQMPSGFMLTKDqeRAIKAMTPEQEETA 444
Cdd:TIGR02168 542 ALGGRLQAvvvenlnaakKAIAFLKQNELGRVTflPLDSIKGTEIQGNDReILKNIEGFLGVAK--DLVKFDPKLRKALS 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 445 SLLS------SVTQGMESAYVSPSGYRLVSE------TEWNLLQKEVHNAGNKLGRRCDMcSNYEKQLQGIQIQEAETRD 512
Cdd:TIGR02168 620 YLLGgvlvvdDLDNALELAKKLRPGYRIVTLdgdlvrPGGVITGGSAKTNSSILERRREI-EELEEKIEELEEKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 513 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDsshqisalVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSR 592
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKD--------LARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 593 EQVSEELVRLQKDNDSLQgkhslhvslQQAEDFIlpDTTEALRELVLKYREDIINVRTAADHVEEKLkaeilflkEQIQA 672
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELE---------AQIEQLK--EELKALREALDELRAELTLLNEEAANLRERL--------ESLER 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 673 EQCLKENLEETLQLEIENCKEEIAsisSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISLEEQLKKETAAKATVEQ 752
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIE---SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 615276234 753 LMFEEKNKAQRLQTELdvsEQVQRDFVKLSQTLQVQLERIRQADSLE 799
Cdd:TIGR02168 909 KRSELRRELEELREKL---AQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
11-781 |
7.16e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 7.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 11 DEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEA----------IDEVKRQWREEVASLQAVMKE 80
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalaneISRLEQQKQILRERLANLERQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 81 TVRDYEHQFHL-----RLEQERTQWAQYRESAEREIADLRRRLSEGQEE-ENLENEMKKAQEDAEKLRSVVMPMEKEIAA 154
Cdd:TIGR02168 318 LEELEAQLEELeskldELAEELAELEEKLEELKEELESLEAELEELEAElEELESRLEELEEQLETLRSKVAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 155 LKDKLTEAEDKIKELEASKVKELNHYLEAEKSCrtdLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLK 234
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKL---EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 235 HTWQKANDQFLESQRLLmRDMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLnkrKDHKKADVEEEIKIPVVC-----AL 309
Cdd:TIGR02168 475 QALDAAERELAQLQARL-DSLERLQENLEGFSEGVKALLKNQSGLSGILGVL---SELISVDEGYEAAIEAALggrlqAV 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 310 TQEESSAQLSNEEEHLDSTRGSVHSLDAGLLLPSGDPFSksdndmfkDGLRRAQSTDSLGTSGSLQSKALGYnykaksag 389
Cdd:TIGR02168 551 VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGN--------DREILKNIEGFLGVAKDLVKFDPKL-------- 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 390 nldESDFGPLVGADSVSENFDTASLGSLQMPSGFML-TKD-----------------------QERAIKAMTPEQEETAS 445
Cdd:TIGR02168 615 ---RKALSYLLGGVLVVDDLDNALELAKKLRPGYRIvTLDgdlvrpggvitggsaktnssileRRREIEELEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 446 LLSSVTQGMESAYVSPSGYRLVSE---TEWNLLQKEVHNAGNKLGRRCDMCSNYEKQLQGIQIQEAETRDQVKKLQLMLR 522
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEqlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 523 QANDQLEKTMKDKQELEDFIKQSSEDSSHQISALV-LRAQASE-------------------ILLEELQQGLSQAKRDVQ 582
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDeLRAELTLlneeaanlrerleslerriAATERRLEDLEEQIEELS 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 583 EQMAVLMQSREQVSEELVRLQKDNDSLQ---GKHSLHVSLQQAEDFILPDTTEALRELVLKYREDIINVRTAADHVE--- 656
Cdd:TIGR02168 852 EDIESLAAEIEELEELIEELESELEALLnerASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLElrl 931
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 657 EKLKAEILFLKEQIQAEQCLKENLEETLQLEIEnckeeiASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISL 736
Cdd:TIGR02168 932 EGLEVRIDNLQERLSEEYSLTLEEAEALENKIE------DDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFL 1005
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 615276234 737 EEQLKKETAAKATVEQLMfEEKNKAQRLQTeLDVSEQVQRDFVKL 781
Cdd:TIGR02168 1006 TAQKEDLTEAKETLEEAI-EEIDREARERF-KDTFDQVNENFQRV 1048
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
497-778 |
1.52e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 1.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 497 EKQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDsSHQISALVLRAQASEILLEELQQGLSQ 576
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAE-EYELLAELARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 577 AKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKhslhvsLQQAEdfilpdttEALRELVLKYREDIINVRTAADHVE 656
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEE------LEEAE--------AELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 657 EKLKAEILFLKEQIQAEQcLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISL 736
Cdd:COG1196 383 ELAEELLEALRAAAELAA-QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 615276234 737 EEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDF 778
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-748 |
6.77e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 6.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 508 AETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEdsshQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAV 587
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER----RIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 588 LMQSREQVSEELVRLQKdndslQGKHSLHVSLQQAEDFilpdtTEALRelVLKYREDIINVRTAADHVEEKLKAEILFLK 667
Cdd:COG4942 99 LEAQKEELAELLRALYR-----LGRQPPLALLLSPEDF-----LDAVR--RLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 668 EQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISLEEQLKKETAAK 747
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
.
gi 615276234 748 A 748
Cdd:COG4942 247 G 247
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
14-291 |
2.47e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 2.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 14 LKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQwREEVASLQAVMKETVRDYEHQfhlrl 93
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA-QAEEYELLAELARLEQDIARL----- 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 94 EQERTQWAQYRESAEREIADLRRRLS--EgQEEENLENEMKKAQEDAEKLrsvvmpmEKEIAALKDKLTEAEDKIKELEA 171
Cdd:COG1196 308 EERRRELEERLEELEEELAELEEELEelE-EELEELEEELEEAEEELEEA-------EAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 172 SKVKELNHYLEAEKScRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLL 251
Cdd:COG1196 380 ELEELAEELLEALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 615276234 252 MRDMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKD 291
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
92-340 |
3.00e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 3.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 92 RLEQERTQWAQYRESAEREIADLRRRLSEGQEE-ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELE 170
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLElEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 171 ASKVKELNHYLEAEKScrtdlemyVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRL 250
Cdd:COG1196 323 EELAELEEELEELEEE--------LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 251 LMRDMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIPVVCALTQEESSAQLSNEEEHLDSTRG 330
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250
....*....|
gi 615276234 331 SVHSLDAGLL 340
Cdd:COG1196 475 LEAALAELLE 484
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
567-816 |
4.82e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 4.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 567 LEELQQGLSQAK-RDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKhslhvsLQQAEDfilpdTTEALRELVLKYREDI 645
Cdd:COG1196 222 LKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAE------LEELRL-----ELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 646 INVRTAAdhveEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQ 725
Cdd:COG1196 291 YELLAEL----ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 726 LESLQEIKISLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAIL 805
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250
....*....|.
gi 615276234 806 NDTKLTDINQL 816
Cdd:COG1196 447 AAEEEAELEEE 457
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
572-804 |
5.62e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 572 QGLSQAKRDVQEQMAVLmqSREQVSEELVRLQKDNDSLQGKHSLHVSLQQAEDfilpDTTEALRELVLKYREDIinvrTA 651
Cdd:COG1196 216 RELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAELE----AELEELRLELEELELEL----EE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 652 ADHVEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQE 731
Cdd:COG1196 286 AQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 615276234 732 IKISLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAI 804
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
65-340 |
5.96e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 5.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 65 RQWREEVASLQAVMKETVRDYEhqfhlRLEQERTQWAQYRESAEREIADLRRRLSEGQEEEN-LENEMKKAQEDAEKLRS 143
Cdd:COG1196 235 RELEAELEELEAELEELEAELE-----ELEAELAELEAELEELRLELEELELELEEAQAEEYeLLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 144 VVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLL 223
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 224 EQERQQHNQlkhtwQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADvEEEIKI 303
Cdd:COG1196 390 EALRAAAEL-----AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-EEALLE 463
|
250 260 270
....*....|....*....|....*....|....*..
gi 615276234 304 PVVCALTQEESSAQLSNEEEHLDSTRGSVHSLDAGLL 340
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
497-797 |
8.87e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 8.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 497 EKQLQGIQIQEAETRDQVKKLQlmlRQANDQLE--KTMKDKQELEDFIKQSS-EDSSHQISALVLRAQASEILLEELQQG 573
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLR---REREKAERyqALLKEKREYEGYELLKEkEALERQKEAIERQLASLEEELEKLTEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 574 LSQAKRDVQEQMAVLMQSREQV----SEELVRLQKDndslqgKHSLHVSLQQAEDFI--LPDTTEALRELVLKYREDIIN 647
Cdd:TIGR02169 260 ISELEKRLEEIEQLLEELNKKIkdlgEEEQLRVKEK------IGELEAEIASLERSIaeKERELEDAEERLAKLEAEIDK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 648 VRTAADHVEEKLKAEILfLKEQIQAEQCLKENLEETLQLEIENCKEEIAS----ISSLKAELERIKVEKGQLESTLR--- 720
Cdd:TIGR02169 334 LLAEIEELEREIEEERK-RRDKLTEEYAELKEELEDLRAELEEVDKEFAEtrdeLKDYREKLEKLKREINELKRELDrlq 412
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 615276234 721 -EKSQQLESLQEIKISLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADS 797
Cdd:TIGR02169 413 eELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
104-806 |
1.76e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 104 RESAEREIADLRRRLSEGQEE-ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHYLE 182
Cdd:pfam02463 295 EEELKSELLKLERRKVDDEEKlKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEE 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 183 AEKSCRTDLEMyvavLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLmrDMQRMEIVL 262
Cdd:pfam02463 375 LLAKKKLESER----LSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESI--ELKQGKLTE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 263 TSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIpvVCALTQEESSAQLSNEEEHLDSTRGSVHSLDAGLLLP 342
Cdd:pfam02463 449 EKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELL--LSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIIS 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 343 SGDPFSKSDNDMFKDGLRRAQSTDSLGTSGSLQSKALGYNYKAKSAGNLDESDFGPLVGADSVSENFDTASLGSLQMPSG 422
Cdd:pfam02463 527 AHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLA 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 423 FMLTKDQERAIKAMTPEQEETASLLSSVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKLGRRCDmcsNYEKQLQG 502
Cdd:pfam02463 607 QLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL---LEIQELQE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 503 IQIQEAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQ 582
Cdd:pfam02463 684 KAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKE 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 583 EQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLhvslqQAEDFILPDTTEALRELVLKYREDIINVRTAADHVEEKLKAE 662
Cdd:pfam02463 764 EEKSELSLKEKELAEEREKTEKLKVEEEKEEKL-----KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEEL 838
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 663 ILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISLEEQLKK 742
Cdd:pfam02463 839 ALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENE 918
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 615276234 743 ETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILN 806
Cdd:pfam02463 919 IEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEE 982
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
91-323 |
3.72e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 91 LRLEQERTQWAQYRESAEREIADLRRRLSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELE 170
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVE 1636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 171 ASKVKELNHYLEAEKSCRTDLEMYVavlntQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQkandqflESQRL 250
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKI-----KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE-------EAKKA 1704
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 615276234 251 LMRDMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIPVVCALTQEESSAQLSNEEE 323
Cdd:PTZ00121 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
13-279 |
4.20e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 4.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 13 DLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAiatvsentKQEAIDEVKRQWREEVASLQAVMKETVRDYEHQFHLR 92
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS--------ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPE 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 93 LEQERTQWAQYRESAEREIADLRRRL-SEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEA 171
Cdd:TIGR02169 796 IQAELSKLEEEVSRIEARLREIEQKLnRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 172 sKVKELNHYLEAEKSCRTDLEmyvavlnTQKSVLQEDAEKLRKElhevchlLEQERQQHNQLKHTWQKANDQFLESQRLL 251
Cdd:TIGR02169 876 -ALRDLESRLGDLKKERDELE-------AQLRELERKIEELEAQ-------IEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
250 260
....*....|....*....|....*...
gi 615276234 252 MRDMQRMEIVLTSEQLrqVEELKKKDQE 279
Cdd:TIGR02169 941 GEDEEIPEEELSLEDV--QAELQRVEEE 966
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
108-237 |
2.96e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.46 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 108 EREIADLRRRLSEGQEEENLENEMKKAQEDAE--KLRSVVMPMEKEIAALKDKLTEAEDKIKELEAsKVKELNhyLEAEK 185
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEEEEirRLEEQVERLEAEVEELEAELEEKDERIERLER-ELSEAR--SEERR 459
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 615276234 186 SCRTDLEMyvavlntqkSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTW 237
Cdd:COG2433 460 EIRKDREI---------SRLDREIERLERELEEERERIEELKRKLERLKELW 502
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
556-803 |
3.36e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 556 LVLRAQASEILLEELQQGLSQakrdVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKhslhVSLQQAEdfiLPDTTEALR 635
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQ----LQQEIAELEKELAALKKEEKALLKQLAALERR----IAALARR---IRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 636 ELvlkyREDIINVRTAADHVEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQL 715
Cdd:COG4942 80 AL----EAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 716 ESTLREKSQQLESLQEIKISLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQA 795
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
....*...
gi 615276234 796 DSLERIRA 803
Cdd:COG4942 236 AAAAAERT 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
95-302 |
3.76e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 95 QERTQWAQYRESAEREIADLRRRLSEGQ-EEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASK 173
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKkEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 174 VKELNHYLE-AEKSCRTDLEMYVAVLntqksVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQflesQRLLM 252
Cdd:COG4942 100 EAQKEELAElLRALYRLGRQPPLALL-----LSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL----RAELE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 615276234 253 RDMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIK 302
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
32-180 |
3.87e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 3.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 32 RTQLWEAQAEMENIKAIATVS-ENTKQEAIDEVKRQWreevaslqavmketvrdyehqFHLRLEQERtqwaQYREsAERE 110
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEaEAIKKEALLEAKEEI---------------------HKLRNEFEK----ELRE-RRNE 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 111 IADLRRRLSegQEEENLENEMkkaqEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEASKVKELNHY 180
Cdd:PRK12704 84 LQKLEKRLL--QKEENLDRKL----ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
12-281 |
4.56e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 4.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 12 EDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAVMKETVRDYEHQFHL 91
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 92 RLEQERTQWAQYRESAEREIADLRRRLSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELEA 171
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 172 SKVKELNHYLEAEKSCRTDLEMyvavlntqksvlQEDAEKLRKElhevchllEQERQQHNQLKHTWQKANDQFLESQRLL 251
Cdd:PTZ00121 1721 LKKAEEENKIKAEEAKKEAEED------------KKKAEEAKKD--------EEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
250 260 270
....*....|....*....|....*....|
gi 615276234 252 MRDmqrmEIVLTSEQLRQVEELKKKDQEDD 281
Cdd:PTZ00121 1781 IEE----ELDEEDEKRRMEVDKKIKDIFDN 1806
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
90-323 |
4.79e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 4.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 90 HLRLEQERTQWAQYrESAEREiadlrrRLSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLteAEDKIKEL 169
Cdd:pfam17380 280 HQKAVSERQQQEKF-EKMEQE------RLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERM--AMEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 170 EASKVKELNHYLEAEKSCRTDLEM-YVAVLNTQKSVLQEDAEKLRKELHEV--CHLLEQERQQHNQLKHTW------QKA 240
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAMEIsRMRELERLQMERQQKNERVRQELEAArkVKILEEERQRKIQQQKVEmeqiraEQE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 241 NDQFLESQRLLMRDMQRMEIVLTSEQLRQVE-ELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIPVVCALTQEESSAQLS 319
Cdd:pfam17380 431 EARQREVRRLEEERAREMERVRLEEQERQQQvERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE 510
|
....
gi 615276234 320 NEEE 323
Cdd:pfam17380 511 EERK 514
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
660-792 |
5.39e-04 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 43.51 E-value: 5.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 660 KAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIA-------SISSLKAELERIKVEKGQLEStlreksqQLESLQEI 732
Cdd:pfam05911 680 TEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSqlqeseqLIAELRSELASLKESNSLAET-------QLKCMAES 752
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 733 KISLEEQLkkeTAAKATVEQLmfeeKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERI 792
Cdd:pfam05911 753 YEDLETRL---TELEAELNEL----RQKFEALEVELEEEKNCHEELEAKCLELQEQLERN 805
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
44-232 |
7.11e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 7.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 44 NIKAIATVSEntKQEAIDEVKRQWREEVASLQAVMKETVRdyehQFHLRLEQERTQWAQYR-ESAEREIADL---RRRLS 119
Cdd:COG4913 608 NRAKLAALEA--ELAELEEELAEAEERLEALEAELDALQE----RREALQRLAEYSWDEIDvASAEREIAELeaeLERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 120 EGQEE-ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELE-----ASKVKELNHYLEAEKSCRTDLEM 193
Cdd:COG4913 682 ASSDDlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdrleaAEDLARLELRALLEERFAAALGD 761
|
170 180 190
....*....|....*....|....*....|....*....
gi 615276234 194 yvAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQ 232
Cdd:COG4913 762 --AVERELRENLEERIDALRARLNRAEEELERAMRAFNR 798
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
580-795 |
9.90e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 9.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 580 DVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQQAEdfilpdttealrELVLKYREDIINVRTAADHVEEkl 659
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL------------QRLAEYSWDEIDVASAEREIAE-- 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 660 kaeilfLKEQIqaEQCLKENLE-ETLQLEIENCKEEIAsisSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISLEE 738
Cdd:COG4913 673 ------LEAEL--ERLDASSDDlAALEEQLEELEAELE---ELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAED 741
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 615276234 739 QLKKETAAKAtveQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQA 795
Cdd:COG4913 742 LARLELRALL---EERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
497-747 |
1.01e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 497 EKQLQGIQIQEAETRDQVkklqlmlrqanDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQ 576
Cdd:COG1196 280 ELELEEAQAEEYELLAEL-----------ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 577 AKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQQAEDFILPDTTEALRELvlkyrEDIINVRTAADHVE 656
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE-----EALLERLERLEEEL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 657 EKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISL 736
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
250
....*....|.
gi 615276234 737 EEQLKKETAAK 747
Cdd:COG1196 504 EGFLEGVKAAL 514
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
497-741 |
1.12e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 497 EKQLQGIQIQEAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEdsshqisalvlRAQASEILLEELQQGLSQ 576
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE-----------RLEELEEDLSSLEQEIEN 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 577 AKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLqgKHSLHVSLQQAEDFIlpDTTEALRELVLKYREDIINVRTAADHVE 656
Cdd:TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELSKL--EEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 657 EK----LKAEILFLKEQIQAEQCLKENLE---ETLQLEIENCKEEI-----------ASISSLKAELERIKVEKGQLEST 718
Cdd:TIGR02169 832 EKeiqeLQEQRIDLKEQIKSIEKEIENLNgkkEELEEELEELEAALrdlesrlgdlkKERDELEAQLRELERKIEELEAQ 911
|
250 260
....*....|....*....|...
gi 615276234 719 LREKSQQLESLQEIKISLEEQLK 741
Cdd:TIGR02169 912 IEKKRKRLSELKAKLEALEEELS 934
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
43-184 |
1.55e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 43 ENIKAIATVSENTKQEAIDEVKRQWREEVASLQAVMKETVRDYEHQFHlRLEQertqwaqYRESAEREIADLRRRLSEGQ 122
Cdd:COG2433 376 LSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVE-RLEA-------EVEELEAELEEKDERIERLE 447
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 615276234 123 EEenLENEMKKAQEDAEKLRSVVMpMEKEIAALKDKLTEAEDKIKELEaSKVKELNHYLEAE 184
Cdd:COG2433 448 RE--LSEARSEERREIRKDREISR-LDREIERLERELEEERERIEELK-RKLERLKELWKLE 505
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
561-731 |
1.59e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 561 QASEILLEELQQGLsqakRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK-HSLHVSLQQAEDFILPDT-----TEAL 634
Cdd:PLN02939 124 QLSDFQLEDLVGMI----QNAEKNILLLNQARLQALEDLEKILTEKEALQGKiNILEMRLSETDARIKLAAqekihVEIL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 635 RELVLKYREDIINVRTAADHVEEKLKAEILFLKEqiqaeqclkENLeeTLQLEIENCKEEIASISSLKAELERIKVEKGQ 714
Cdd:PLN02939 200 EEQLEKLRNELLIRGATEGLCVHSLSKELDVLKE---------ENM--LLKDDIQFLKAELIEVAETEERVFKLEKERSL 268
|
170
....*....|....*..
gi 615276234 715 LESTLREKSQQLESLQE 731
Cdd:PLN02939 269 LDASLRELESKFIVAQE 285
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
37-234 |
1.78e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 37 EAQAEMENIKAIATVSENTKQ-----EAIDEVKRQWREEVASLQAV--MKETVRDYEHQFHLRL-EQERTQWAQYRESAE 108
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREqiellEPIRELAERYAAARERLAELeyLRAALRLWFAQRRLELlEAELEELRAELARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 109 REIADLRRRLSEGQEE-ENLENEMKKAQEDAEKlrsvvmPMEKEIAALKDKLTEAEDKIKELEAsKVKELNHYLEAEksc 187
Cdd:COG4913 309 AELERLEARLDALREElDELEAQIRGNGGDRLE------QLEREIERLERELEERERRRARLEA-LLAALGLPLPAS--- 378
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 615276234 188 RTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLK 234
Cdd:COG4913 379 AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
12-302 |
1.83e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 12 EDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIdEVKRQwrEEVASLQAVMK-ETVRDYEHQfh 90
Cdd:PTZ00121 1137 EDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAE-EVRKA--EELRKAEDARKaEAARKAEEE-- 1211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 91 LRLEQERTQWAQYRESAEREIADLRRRLSEG---QEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIK 167
Cdd:PTZ00121 1212 RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAkkaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 168 ELEASKVKELNHYLEAEKScrtdlemyvAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLES 247
Cdd:PTZ00121 1292 ADEAKKAEEKKKADEAKKK---------AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 615276234 248 QRLLMRDMQRME--------IVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIK 302
Cdd:PTZ00121 1363 EEKAEAAEKKKEeakkkadaAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
578-801 |
2.64e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 578 KRDVQEQMAVLMQSREQVSEELVRLQKDndslqgkhslhvsLQQAEdfilpdttEALRELvlKYREDIINVRTAADHVEE 657
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKE-------------LEEAE--------AALEEF--RQKNGLVDLSEEAKLLLQ 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 658 KLK---AEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIAS--ISSLKAELERIKVEKGQLESTLREKSQQLESLQEI 732
Cdd:COG3206 220 QLSeleSQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQ 299
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 733 KISLEEQLKKETA-AKATVEQLMFEEKNKAQRLQTELdvsEQVQRDFVKLSQTLQVQLERIRQADSLERI 801
Cdd:COG3206 300 IAALRAQLQQEAQrILASLEAELEALQAREASLQAQL---AQLEARLAELPELEAELRRLEREVEVAREL 366
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
16-767 |
2.74e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 16 RQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAVMK--ETVRDYEhqfhlrl 93
Cdd:PTZ00121 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKkaEDARKAE------- 1131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 94 EQERTQWAQYRESAEREIADLRRRLSEGQEEENLENEMKKAqEDAEKLRSVVMPMEKEIAalkDKLTEAEDKIKELEASK 173
Cdd:PTZ00121 1132 EARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKA-EDAKKAEAARKAEEVRKA---EELRKAEDARKAEAARK 1207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 174 VKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMR 253
Cdd:PTZ00121 1208 AEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAE 1287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 254 DMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVE------EEIKIPVVCALTQEESSA---QLSNEEEH 324
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADaakkkaEEAKKAAEAAKAEAEAAAdeaEAAEEKAE 1367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 325 LDSTRGSVHSLDAGLLLPSGDPFSKSDnDMFKDGLRRAQSTDSLGTSGSLQSKALGYNYKAKSAGNLDEsdfgpLVGADS 404
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKAD-EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE-----AKKKAE 1441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 405 VSENFDTASLGSLQMPSGFMLTKDQERAIKAMTPEQE-ETASLLSSVTQGMESAYVSPSGYRLVSETEWNllQKEVHNAG 483
Cdd:PTZ00121 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK--ADEAKKAE 1519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 484 NKlgRRCDMCSNYEKQLQGIQIQEAETR---DQVKKLQlMLRQANDQLEKTMKDKQEledfikqssEDSSHQISALVLRA 560
Cdd:PTZ00121 1520 EA--KKADEAKKAEEAKKADEAKKAEEKkkaDELKKAE-ELKKAEEKKKAEEAKKAE---------EDKNMALRKAEEAK 1587
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 561 QASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQQAEDFILPDTTEALRELVLK 640
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 641 YREDiinvrtaadhvEEKLKAeilflkEQIQAEQCLKENLEETLQLEIENcKEEIASISSLKAELERIKVEKGQLESTLR 720
Cdd:PTZ00121 1668 KKAE-----------EDKKKA------EEAKKAEEDEKKAAEALKKEAEE-AKKAEELKKKEAEEKKKAEELKKAEEENK 1729
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 615276234 721 EKSQQLESLQEIKISLEEQLKKETAAKATVEQLMFEEKNKAQRLQTE 767
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
125-410 |
3.55e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 41.19 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 125 ENLENEMKKAQEDAEKLRSvvmpmeKEIAAL-KDKLTEAEDKIKELEASKVKELNHYLEAEKSCRTDlemyvaVLNTQKS 203
Cdd:PTZ00108 1105 EKLNAELEKKEKELEKLKN------TTPKDMwLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGK------ASKLRKP 1172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 204 VLQEDAEKLR-KELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEDDE 282
Cdd:PTZ00108 1173 KLKKKEKKKKkSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSK 1252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 283 QQRLNKRKDHKKADVEEEIKIPV----VCALTQEESSAQLSNEEEHLDSTRGSVHSLDAGLLLPSGDPFSKSdNDMFKDG 358
Cdd:PTZ00108 1253 SSEDNDEFSSDDLSKEGKPKNAPkrvsAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKK-KKSEKKT 1331
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 615276234 359 LRRAQSTDSLGTSGSLQSKALGYNYKAKSAGNLDESDFGPLVGADSVSENFD 410
Cdd:PTZ00108 1332 ARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDED 1383
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
583-797 |
3.68e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 583 EQMAVLMQSREQVSEELVRLQKDNDSLQgkhSLHvslQQAEDFI--------LPDTTEALRELVLKYREdIINVRTAADH 654
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQ---RLH---QAFSRFIgshlavafEADPEAELRQLNRRRVE-LERALADHES 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 655 VEEKLKAEILFLKEQIQA-EQCLKEN---LEETLQLEIENCKEEIASISSLKAELERIKVEKGQLE---STLREKSQQLE 727
Cdd:PRK04863 859 QEQQQRSQLEQAKEGLSAlNRLLPRLnllADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEpivSVLQSDPEQFE 938
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 615276234 728 SLQEIKISLEEQLKKETAAKATVEQLM-----FEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADS 797
Cdd:PRK04863 939 QLKQDYQQAQQTQRDAKQQAFALTEVVqrrahFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQA 1013
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
12-176 |
3.71e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 3.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 12 EDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAiatvsENTKQEAIDEVKRQWrEEVASLQAVMKETVRDYEHqfHL 91
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELRE-----ELEKLEKLLQLLPLY-QELEALEAELAELPERLEE--LE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 92 RLEQERTQWAQYRESAEREIADLRRRLSEGQEEENL--ENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKEL 169
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLatEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
....*..
gi 615276234 170 EASKVKE 176
Cdd:COG4717 233 ENELEAA 239
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
12-223 |
4.41e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 12 EDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSENTKQEAIDEVKRQWREEVASLQAVmkETVRDYEHQFHL 91
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL--ESKRSELRRELE 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 92 RLEQERTQWAQYRESAEREIADLRRRLSEGQ--EEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKEL 169
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLQERLSEEYslTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEEL 998
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 615276234 170 EASKvKELNHYLEAEKSCRTDLEMYVAVLNTQ-KSVLQEDAEKLRKELHEVCHLL 223
Cdd:TIGR02168 999 KERY-DFLTAQKEDLTEAKETLEEAIEEIDREaRERFKDTFDQVNENFQRVFPKL 1052
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
650-815 |
4.68e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 650 TAADHVEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESL 729
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 730 QEIKISLEEQLKKETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQADSLERIRAILNDTK 809
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
....*.
gi 615276234 810 LTDINQ 815
Cdd:TIGR02168 409 LERLED 414
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
149-323 |
6.94e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.92 E-value: 6.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 149 EKEIAALKDKLTEAEDKIKELE------------ASKVKELNHYLEAEKSC-----RTDLEMYVAVLNTQKSVLQEDAEK 211
Cdd:COG1196 178 ERKLEATEENLERLEDILGELErqleplerqaekAERYRELKEELKELEAEllllkLRELEAELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 212 LRKELHEVCHLLEQERQQHNQLkhtwQKANDQFLESQRLLMRDMQRMEIVLTSEQLRQVEELKKKDQEDDEQQRLNKRKD 291
Cdd:COG1196 258 LEAELAELEAELEELRLELEEL----ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333
|
170 180 190
....*....|....*....|....*....|..
gi 615276234 292 HKKADVEEEIKIPVVCALTQEESSAQLSNEEE 323
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
506-776 |
7.70e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 7.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 506 QEAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQm 585
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK- 1390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 586 avlmQSREQVSEELVRLQKDNDSLQGKHSLHVSLQQAEdfilpdttealrelvlKYREDIINVRTAADHVEEKLKAEILF 665
Cdd:PTZ00121 1391 ----KKADEAKKKAEEDKKKADELKKAAAAKKKADEAK----------------KKAEEKKKADEAKKKAEEAKKADEAK 1450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 666 LK--EQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQLESLQEIKISLEEQLKKE 743
Cdd:PTZ00121 1451 KKaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
250 260 270
....*....|....*....|....*....|....*
gi 615276234 744 TAAKATVEQLMFEEKNKAQRLQT--ELDVSEQVQR 776
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKaeELKKAEEKKK 1565
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
57-772 |
7.89e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 57 QEAIDEVKRQWREEVASLQAVMKETVRDYEHQ-FHLRLEQERTQWAQYRESAERE-IADLRRRlsEGQEEENLENE---- 130
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQkFYLRQSVIDLQTKLQEMQMERDaMADIRRR--ESQSQEDLRNQlqnt 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 131 --------------MKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAED----KIKELEASKVKELNHYLEAEKSCRTDLE 192
Cdd:pfam15921 151 vheleaakclkedmLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEasgkKIYEHDSMSTMHFRSLGSAISKILRELD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 193 MYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQH-NQL-------------KHTWQKANDQFLESQRLLMRDMQRM 258
Cdd:pfam15921 231 TEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRiEQLiseheveitglteKASSARSQANSIQSQLEIIQEQARN 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 259 EivlTSEQLRQVEELKKKDQEDDEQQRLNKRKDHKKADVEEEIKIPVVCALTQ-----EESSAQLSNEEEHLDSTRGSVH 333
Cdd:pfam15921 311 Q---NSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEarterDQFSQESGNLDDQLQKLLADLH 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 334 SLDAGLLLPSGDPFSKSDNDMFK----DGLRRAQSTDSLGTSgslQSKALGYNYKAKSAGNLDESdfgpLVGADSVSENF 409
Cdd:pfam15921 388 KREKELSLEKEQNKRLWDRDTGNsitiDHLRRELDDRNMEVQ---RLEALLKAMKSECQGQMERQ----MAAIQGKNESL 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 410 DTASLGSLQMPSGFMLTKD--QERAIKAMTPEQ-EETASLLSSVTQGMESAYVSPSGYRLVSETEWNLLQKEVHNAGNKl 486
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKvvEELTAKKMTLESsERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE- 539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 487 grrCDMCSNYEKQLQGIQIQEAET-------RDQVKKLQLMLRQ----------ANDQLEKTMKDKQ-ELEDF--IKQSS 546
Cdd:pfam15921 540 ---GDHLRNVQTECEALKLQMAEKdkvieilRQQIENMTQLVGQhgrtagamqvEKAQLEKEINDRRlELQEFkiLKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 547 EDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQQAEDFI 626
Cdd:pfam15921 617 DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNK 696
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 627 LPDTTEALRELVLKYREDIINVRTAADH---VEEKLKAEILFLKEQIQAEQCLKENLEETL---QLEIENCKEEIasiSS 700
Cdd:pfam15921 697 LKMQLKSAQSELEQTRNTLKSMEGSDGHamkVAMGMQKQITAKRGQIDALQSKIQFLEEAMtnaNKEKHFLKEEK---NK 773
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 615276234 701 LKAELERIKVEKGQLESTLREKSQQLESLQEIKISLEEQLKKETAAKATVEQLMFEEKNKAQR--LQTELDVSE 772
Cdd:pfam15921 774 LSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRlkLQHTLDVKE 847
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1-334 |
7.97e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 39.89 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 1 MAQPGPASQPDEDLKRQNAVLQAAQDDLGHLRTqlwEAQAEMENIKAIATVSENTKQEAIDEVKrqwreEVASLQAVMKE 80
Cdd:PLN02939 37 ARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNT---DENGQLENTSLRTVMELPQKSTSSDDDH-----NRASMQRDEAI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 81 TVRDYEHQfhlrleqerTQWAQYRESAEREIADLRRRLSEGQEEENLENEMK-KAQEDAEKLRSVVMPMEKEIAALKDKL 159
Cdd:PLN02939 109 AAIDNEQQ---------TNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARlQALEDLEKILTEKEALQGKINILEMRL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 160 TEAEDKIK-------------ELEASKVKELNHYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCH----- 221
Cdd:PLN02939 180 SETDARIKlaaqekihveileEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAEteerv 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 222 -LLEQERqqhNQLKHTWQKANDQFLESQrllmRDMQRMEIVLTSEQLRQVEEL-----KKKDQEDDEQQRLNKRKD-HKK 294
Cdd:PLN02939 260 fKLEKER---SLLDASLRELESKFIVAQ----EDVSKLSPLQYDCWWEKVENLqdlldRATNQVEKAALVLDQNQDlRDK 332
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 615276234 295 AD-VEEEIKIPVVCALTQEES---SAQLSNEEEHLDSTRGSVHS 334
Cdd:PLN02939 333 VDkLEASLKEANVSKFSSYKVellQQKLKLLEERLQASDHEIHS 376
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
108-229 |
8.33e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 8.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 108 EREIADLRRRLSEGQEE-ENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKLTEAEDKIKELE-----ASKVKELN--- 178
Cdd:COG1579 16 DSELDRLEHRLKELPAElAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEeqlgnVRNNKEYEalq 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 615276234 179 HYLEAEKSCRTDLEMYVAVLNTQKSVLQEDAEKLRKELHEVCHLLEQERQQ 229
Cdd:COG1579 96 KEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE 146
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
506-811 |
9.99e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.57 E-value: 9.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 506 QEAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM 585
Cdd:pfam02463 177 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESS 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 586 AVLMQSREQVSEELVRLQKDNDSLQGKHSLHVSLQQAEDfilpdtTEALRELVLKYREDIINVRTAADHVEEKLKAEILF 665
Cdd:pfam02463 257 KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEE------EELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 666 LKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKGQLESTLREKSQQL---ESLQEIKISLEEQLKK 742
Cdd:pfam02463 331 KKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKlkeEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 615276234 743 ETAAKATVEQLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQ-LERIRQADSLERIRAILNDTKLT 811
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQeLKLLKDELELKKSEDLLKETQLV 480
|
|
| |
