NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|611661038|gb|EZM38942|]
View 

oligopeptide transporter permease [Streptococcus pyogenes ABC020046559]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 283-494 1.19e-52

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 180.65  E-value: 1.19e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 283 NSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTATMTFMLALPS----IAVIYV--VRF----LGGMVGLPDSFpm 352
Cdd:COG0601   97 VTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSfwlgLLLILLfaVKLgwlpVSGRVSPWEDF-- 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 353 lgASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIG 432
Cdd:COG0601  175 --LDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLG 252

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 611661038 433 GATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIKLS 494
Cdd:COG0601  253 GAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 283-494 1.19e-52

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 180.65  E-value: 1.19e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 283 NSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTATMTFMLALPS----IAVIYV--VRF----LGGMVGLPDSFpm 352
Cdd:COG0601   97 VTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSfwlgLLLILLfaVKLgwlpVSGRVSPWEDF-- 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 353 lgASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIG 432
Cdd:COG0601  175 --LDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLG 252

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 611661038 433 GATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIKLS 494
Cdd:COG0601  253 GAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 299-492 6.70e-34

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 126.26  E-value: 6.70e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038  299 GLPLGLFMARFKNTYFDRFSTATMTFMLALPSIAVIYVVRFLGGMvglpdsfpmlgaSDPKSYILPALILGILNIPTTVI 378
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL------------SILGHGILPAIILALLGWAGYAR 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038  379 WFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSAN 458
Cdd:pfam00528  69 LIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYD 148

                         170       180       190
                  ....*....|....*....|....*....|....
gi 611661038  459 NSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIK 492
Cdd:pfam00528 149 YPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 283-475 7.12e-23

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 95.81  E-value: 7.12e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 283 NSFVIGFFGVMFSYIVGLPLGLFMARFKNtYFDRFSTATMTFMLALPSIAVIYVVRFLGGMVGLPDSFPmlgasdpkSYI 362
Cdd:cd06261    3 NTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------GLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 363 LPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFA 442
Cdd:cd06261   74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 611661038 443 F----PGMGKMLIDSIKSANNSMIVGLTFIFTVLSIV 475
Cdd:cd06261  154 GeapgPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
287-492 3.57e-21

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 94.49  E-value: 3.57e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 287 IGFFGVMFSYIVGLPLGLFMARFKNTYFDR--------------FSTATMTFMLALPSIAVIYVVRFLGGMVGLPDSFPM 352
Cdd:PRK10914 102 LGVCAMIFAVAVGIPVGVLAAVKRGSIFDHtavglaltgysmpiFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPL 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 353 LGA--------SDPKSY-------ILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMV 417
Cdd:PRK10914 182 TGFmlidtaiwGEDGNFidavahmILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAML 261

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 611661038 418 PIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIK 492
Cdd:PRK10914 262 PVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 283-494 1.19e-52

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 180.65  E-value: 1.19e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 283 NSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTATMTFMLALPS----IAVIYV--VRF----LGGMVGLPDSFpm 352
Cdd:COG0601   97 VTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSfwlgLLLILLfaVKLgwlpVSGRVSPWEDF-- 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 353 lgASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIG 432
Cdd:COG0601  175 --LDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLG 252

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 611661038 433 GATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIKLS 494
Cdd:COG0601  253 GAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 299-492 6.70e-34

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 126.26  E-value: 6.70e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038  299 GLPLGLFMARFKNTYFDRFSTATMTFMLALPSIAVIYVVRFLGGMvglpdsfpmlgaSDPKSYILPALILGILNIPTTVI 378
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL------------SILGHGILPAIILALLGWAGYAR 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038  379 WFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSAN 458
Cdd:pfam00528  69 LIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYD 148

                         170       180       190
                  ....*....|....*....|....*....|....
gi 611661038  459 NSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIK 492
Cdd:pfam00528 149 YPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 283-475 7.12e-23

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 95.81  E-value: 7.12e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 283 NSFVIGFFGVMFSYIVGLPLGLFMARFKNtYFDRFSTATMTFMLALPSIAVIYVVRFLGGMVGLPDSFPmlgasdpkSYI 362
Cdd:cd06261    3 NTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILP--------GLG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 363 LPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFA 442
Cdd:cd06261   74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 611661038 443 F----PGMGKMLIDSIKSANNSMIVGLTFIFTVLSIV 475
Cdd:cd06261  154 GeapgPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
287-492 3.57e-21

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 94.49  E-value: 3.57e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 287 IGFFGVMFSYIVGLPLGLFMARFKNTYFDR--------------FSTATMTFMLALPSIAVIYVVRFLGGMVGLPDSFPM 352
Cdd:PRK10914 102 LGVCAMIFAVAVGIPVGVLAAVKRGSIFDHtavglaltgysmpiFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPL 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 353 LGA--------SDPKSY-------ILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMV 417
Cdd:PRK10914 182 TGFmlidtaiwGEDGNFidavahmILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAML 261

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 611661038 418 PIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIK 492
Cdd:PRK10914 262 PVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 284-491 1.22e-20

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 93.27  E-value: 1.22e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 284 SFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTATMTFMLALPS--IAVIYVVRFLGGmvGLPDSFPMLGASDPK-- 359
Cdd:PRK15133 136 SITLGLWSTLIIYLVSIPLGIRKAVRNGSRFDVWSSAFIIIGYAIPAflFAILLIVFFAGG--SYFDLFPLRGLVSANfd 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 360 ---------SYI----LPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPAS 426
Cdd:PRK15133 214 slpwyqkitDYLwhitLPVLATVIGGFAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPAT 293

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 611661038 427 II-LAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRI 491
Cdd:PRK15133 294 FIsMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 294-492 1.67e-20

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 92.08  E-value: 1.67e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 294 FSYIVGLPLGLFMARFKNTYFDRFSTATMTFMLALPSIAV------IYVVRfLGGMvglpdsfPMLGASDPKSYILPALI 367
Cdd:PRK15081 108 WAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALgmllmqVFSVE-LGWL-------PTVGADSWQHYILPSLT 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 368 LGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMG 447
Cdd:PRK15081 180 LGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLG 259

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 611661038 448 KMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIK 492
Cdd:PRK15081 260 RLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 297-494 2.63e-19

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 88.60  E-value: 2.63e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 297 IVGLPLGLFMARFKNTYFDRFSTATMTFMLALPS--IAVIYVVRF---LGGMvglpdsfPMLGASDPKSYILPALILGIL 371
Cdd:PRK10352 114 LTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNfwLAFLLVMAFsvyLQWL-------PAMGYGGWQHIILPAVSIAFM 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 372 NIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLI 451
Cdd:PRK10352 187 SLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAV 266

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 611661038 452 DSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIKLS 494
Cdd:PRK10352 267 SAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRH 309
oppB PRK09471
oligopeptide ABC transporter permease OppB;
284-492 5.21e-16

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 78.57  E-value: 5.21e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 284 SFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTATMTFMLALPS--IAVIYVVRFLGGMVGLPDSFPMLGAsdPKSY 361
Cdd:PRK09471  97 SAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSfvVAPLLVLIFAITLHWLPGGGWNGGA--LKFM 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 362 ILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVF 441
Cdd:PRK09471 175 ILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIF 254

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 611661038 442 AFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIK 492
Cdd:PRK09471 255 GLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
PRK15110 PRK15110
peptide ABC transporter permease SapB;
362-489 5.85e-09

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 57.39  E-value: 5.85e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 362 ILPALILGIlnIPTT-VI-WFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVS--GVPASIILAIggATLT 437
Cdd:PRK15110 184 ILPVITLAV--APTTeVIrLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPrlGLQFSTMLTL--AMIT 259

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 611661038 438 ETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDP 489
Cdd:PRK15110 260 EMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANP 311
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
284-490 2.74e-06

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 49.04  E-value: 2.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 284 SFVIGFFGVMFSYIVGLPLGLFMARFKNTyFDRFSTATMTFMLALPSIAVIYVvrflggmvglpdsfpmLGASDPKSYIL 363
Cdd:PRK09881  96 SILAGLVVVAIAGMIGSLLGCLSGVLGGR-ADAIIMRIMDIMLSIPSLVLTMA----------------LAAALGPSLFN 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 364 PALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVsgVPASiiLAIGGATLTETVFAF 443
Cdd:PRK09881 159 AMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLI--VQAS--LDIGSAILMAATLGF 234

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 444 PGMGKMLIDS-----IKSANN--------SMIVGLTFIFTVLSIVslLLGDIVMTLVDPR 490
Cdd:PRK09881 235 IGLGAQQPSAewgamVANGRNyvldqwwyCAFPGAAILLTAVGFN--LFGDGIRDLLDPK 292
PRK15082 PRK15082
glutathione ABC transporter permease GsiD; Provisional
 284-492 1.12e-03

glutathione ABC transporter permease GsiD; Provisional


Pssm-ID: 185040 [Multi-domain]  Cd Length: 301  Bit Score: 40.87  E-value: 1.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 284 SFVIGFFGVMFSYIVGLPLGLfMARFKNTYFDRFSTATMTFMLALPSIAV-IYVVRFLG-GMVGLpdsfpmlgasdpksy 361
Cdd:PRK15082 102 SLAAGFFSVAIGAAIGTVLGL-LAGYYEGWWDRIIMRICDVLFAFPGILLaIAVVAILGsGMANV--------------- 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 362 ilpALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVsgvpASIILAIGGATLTETVF 441
Cdd:PRK15082 166 ---IIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIV----VYFTMRIGTSIITAASL 238

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 611661038 442 AFPGMGK---------ML----IDSIKSANNSMIVGLTFIFTVLSIVslLLGDIVMTLVDPRIK 492
Cdd:PRK15082 239 SFLGLGAqpptpewgaMLnearADMVIAPHVALFPSLAIFLTVLAFN--LLGDGLRDALDPKIK 300
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 391-489 1.55e-03

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 40.74  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 611661038 391 DWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPasIILAIGGATLTETVF-------AFPGMGKMLIDSiKSANNSMIV 463
Cdd:PRK15021 233 DYIRAAQALGVSDRSIILRHMLPNAMVATLTFLP--FILCSSITTLTSLDFlgfglplGSPSLGELLLQG-KNNLQAPWL 309

                         90       100
                 ....*....|....*....|....*...
gi 611661038 464 GLTFIFTVLSIVSLL--LGDIVMTLVDP 489
Cdd:PRK15021 310 GITAFLSVAILLSLLifIGEAVRDAFDP 337
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH