|
Name |
Accession |
Description |
Interval |
E-value |
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-240 |
1.06e-159 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 441.78 E-value: 1.06e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGI 80
Cdd:COG1137 1 MMTLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:COG1137 81 GYLPQEASIFRKLTVEDNILAVLELRK-LSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREVYLGESFE 240
Cdd:COG1137 160 LDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPLVRKVYLGEDFR 239
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
4-236 |
9.44e-136 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 380.74 E-value: 9.44e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRnTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03218 81 PQEASIFRKLTVEENILAVLEIR-GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREVYLG 236
Cdd:cd03218 160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
3-239 |
3.96e-131 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 369.68 E-value: 3.96e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISY 82
Cdd:TIGR04406 1 TLVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHLPMHERARLGIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLD 162
Cdd:TIGR04406 81 LPQEASIFRKLTVEENIMAVLEIRKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 163 EPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREVYLGESF 239
Cdd:TIGR04406 161 EPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVANEKVRRVYLGEQF 237
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1-239 |
4.73e-87 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 257.90 E-value: 4.73e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGI 80
Cdd:PRK10895 1 MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREVYLGESF 239
Cdd:PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDF 239
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-236 |
1.38e-73 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 223.32 E-value: 1.38e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGI 80
Cdd:COG0410 1 MPMLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNIWAIIENRNTLSTTEKRdlLESLLgDL--GLQEKRKQPAYTLSGGERRRTEIARSLAIDPHF 158
Cdd:COG0410 81 GYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRAD--LERVY-ELfpRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 159 LLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREVYLG 236
Cdd:COG0410 158 LLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREAYLG 235
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
4-227 |
2.10e-73 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 222.69 E-value: 2.10e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRntlSTTEKRDLLESLLgDL--GLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:cd03224 81 PEGRRIFPELTVEENLLLGAYAR---RRAKRKARLERVY-ELfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
4-235 |
5.97e-69 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 211.85 E-value: 5.97e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGisYL 83
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIG--YV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:COG1131 79 PQEPALYPDLTVRENLRFFARLYG-LPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDE 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLArEVYL 235
Cdd:COG1131 158 PTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARLLE-DVFL 228
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-241 |
2.69e-65 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 202.96 E-value: 2.69e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGI 80
Cdd:COG0411 2 DPLLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNI------------WAIIENRNTLSTTEK--RDLLESLLGDLGLQEKRKQPAYTLSGGERRRT 146
Cdd:COG0411 82 ARTFQNPRLFPELTVLENVlvaaharlgrglLAALLRLPRARREEReaRERAEELLERVGLADRADEPAGNLSYGQQRRL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 147 EIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIR-ILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELL 225
Cdd:COG0411 162 EIARALATEPKLLLLDEPAAGLNPEETEELAELIRrLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEVR 241
|
250
....*....|....*.
gi 609248018 226 KNRLAREVYLGESFEA 241
Cdd:COG0411 242 ADPRVIEAYLGEEAAA 257
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
4-227 |
7.28e-65 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 201.13 E-value: 7.28e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNI---------WAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAI 154
Cdd:cd03219 81 FQIPRLFPELTVLENVmvaaqartgSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 155 DPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
4-228 |
1.71e-59 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 187.76 E-value: 1.71e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGisYL 83
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIG--VL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIE-NRNTLSTTEKRdlLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLD 162
Cdd:COG4555 80 PDERGLYDRLTVRENIRYFAElYGLFDEELKKR--IEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 163 EPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNR 228
Cdd:COG4555 158 EPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEI 223
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
4-215 |
1.09e-56 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 178.36 E-value: 1.09e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGisYL 83
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIG--YL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIwaiienrntlsttekrdllesllgdlglqekrkqpayTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03230 79 PEEPSLYENLTVRENL-------------------------------------KLSGGMKQRLALAQALLHDPELLILDE 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQI 215
Cdd:cd03230 122 PTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
4-226 |
4.07e-53 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 171.32 E-value: 4.07e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPM--YRRARLGIS 81
Cdd:COG1127 6 IEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEkeLYELRRRIG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDNI-WAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQ-PAyTLSGGERRRTEIARSLAIDPHFL 159
Cdd:COG1127 86 MLFQGGALFDSLTVFENVaFPLREHTD-LSEAEIRELVLEKLELVGLPGAADKmPS-ELSGGMRKRVALARALALDPEIL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:COG1127 164 LYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
4-231 |
4.66e-51 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 165.78 E-value: 4.66e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRntlsTTEKRDLLESLLgDL--GLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:TIGR03410 81 PQGREIFPRLTVEENLLTGLAAL----PRRSRKIPDEIY-ELfpVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVD-KNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAR 231
Cdd:TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAeGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDEDKVRR 226
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
4-228 |
1.54e-50 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 164.43 E-value: 1.54e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY-GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLgISY 82
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRK-VGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQ--EASVFRKlSVEDNIwAI-IENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:COG1122 80 VFQnpDDQLFAP-TVEEDV-AFgPENLG-LPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNR 228
Cdd:COG1122 157 VLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDY 225
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
4-226 |
6.25e-50 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 163.06 E-value: 6.25e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNL--PMYRRARLGIS 81
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLseAELYRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVD-KNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKeLGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-234 |
6.88e-50 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 163.68 E-value: 6.88e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLgISYL 83
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARR-IAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDniwaIIE-------NRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDP 156
Cdd:COG1120 81 PQEPPAPFGLTVRE----LVAlgryphlGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 157 HFLLLDEPFAGIDPIAVHEIKNIIRILV-DKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREVY 234
Cdd:COG1120 157 PLLLLDEPTSHLDLAHQLEVLELLRRLArERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVY 235
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
4-224 |
8.24e-49 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 159.59 E-value: 8.24e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQ--VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPmyRRARLGIS 81
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR--KAARQSLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDN--IWAIIENrntLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:cd03263 79 YCPQFDALFDELTVREHlrFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVdKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:cd03263 156 LLDEPTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
4-219 |
2.16e-48 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 158.45 E-value: 2.16e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRarlGISYL 83
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR---NIGMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03259 78 FQDYALFPHLTVAENI-AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 164 PFAGIDPIA----VHEIKNIIRILvdKNIGILITdHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03259 157 PLSALDAKLreelREELKELQREL--GITTIYVT-HDQEEALALADRIAVMNEGRIVQVG 213
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-234 |
7.50e-48 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 157.94 E-value: 7.50e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVItnlpmyRRARLGI 80
Cdd:COG1121 4 MPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPP------RRARRRI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFR--KLSVED----------NIWAIIenrntlsTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEI 148
Cdd:COG1121 78 GYVPQRAEVDWdfPITVRDvvlmgrygrrGLFRRP-------SRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 149 ARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIkDGQIVAEGDKAELLKNR 228
Cdd:COG1121 151 ARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPEEVLTPE 229
|
....*.
gi 609248018 229 LAREVY 234
Cdd:COG1121 230 NLSRAY 235
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
3-234 |
1.13e-47 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 159.12 E-value: 1.13e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHvitnlPMYRRARLGISY 82
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGE-----PLDPEDRRRIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLD 162
Cdd:COG4152 76 LPEERGLYPKMKVGEQLVYLARLKG-LSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILD 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 609248018 163 EPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAElLKNRLAREVY 234
Cdd:COG4152 155 EPFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDE-IRRQFGRNTL 225
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-224 |
2.63e-47 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 159.88 E-value: 2.63e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRarlGI 80
Cdd:COG3842 3 MPALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPEKR---NV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNIwAI-IENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:COG3842 80 GMVFQDYALFPHLTVAENV-AFgLRMRG-VPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 609248018 160 LLDEPFAGIDP---IAV-HEIKNIIRILvdkniGI---LITdHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:COG3842 158 LLDEPLSALDAklrEEMrEELRRLQREL-----GItfiYVT-HDQEEALALADRIAVMNDGRIEQVGTPEEI 223
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
11-233 |
4.12e-46 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 155.24 E-value: 4.12e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 11 KKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGIsyLPQEASVF 90
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGI--VPQYASVD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 91 RKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDP 170
Cdd:TIGR01188 79 EDLTGRENL-EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 171 IAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAElLKNRLAREV 233
Cdd:TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEE-LKRRLGKDT 219
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
5-214 |
4.51e-46 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 152.62 E-value: 4.51e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKY--GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLgISY 82
Cdd:cd03225 1 ELKNLSFSYpdGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRK-VGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASV-FRKLSVEDNIwAI-IENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:cd03225 80 VFQNPDDqFFGPTVEEEV-AFgLENLG-LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQ 214
Cdd:cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
4-219 |
6.34e-45 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 149.35 E-value: 6.34e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHvitnlPMYRRARLGISYL 83
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK-----PLDIAARNRIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03269 76 PEERGLYPKMKVIDQLVYLAQLKG-LKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03269 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
4-224 |
2.26e-44 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 148.29 E-value: 2.26e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPmyRRARLGISYL 83
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP--REVRRRIGIV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDN--IWAIIENrntLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:cd03265 79 FQDLSVDDELTGWENlyIHARLYG---VPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:cd03265 156 DEPTIGLDPQTRAHVWEYIEKLKEEfGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-227 |
2.34e-44 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 151.84 E-value: 2.34e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MStLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVI-TNLPMYRRarlG 79
Cdd:COG1118 1 MS-IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLfTNLPPRER---R 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQ--EKRKqPAyTLSGGERRRTEIARSLAIDPH 157
Cdd:COG1118 77 VGFVFQHYALFPHMTVAENIAFGLRVRP-PSKAEIRARVEELLELVQLEglADRY-PS-QLSGGQRQRVALARALAVEPE 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 158 FLLLDEPFAGIDPIAVHEI-KNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:COG1118 154 VLLLDEPFGALDAKVRKELrRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDR 224
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-227 |
8.04e-44 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 154.29 E-value: 8.04e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY-----GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARL 78
Cdd:COG1123 261 LEVRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLREL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 G--ISYLPQ--EASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEK-RKQPAYTLSGGERRRTEIARSLA 153
Cdd:COG1123 341 RrrVQMVFQdpYSSLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLPPDlADRYPHELSGGQRQRVAIARALA 420
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:COG1123 421 LEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFAN 495
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
4-238 |
2.04e-43 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 147.06 E-value: 2.04e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIE---NRNTL-----------STTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIA 149
Cdd:PRK11300 86 FQHVRLFREMTVIENLLVAQHqqlKTGLFsgllktpafrrAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 150 RSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNR 228
Cdd:PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
250
....*....|
gi 609248018 229 LAREVYLGES 238
Cdd:PRK11300 246 DVIKAYLGEA 255
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
5-214 |
7.74e-43 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 142.38 E-value: 7.74e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPmYRRARLGISYLP 84
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-LEELRRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 85 QeasvfrklsvedniwaiienrntlsttekrdllesllgdlglqekrkqpaytLSGGERRRTEIARSLAIDPHFLLLDEP 164
Cdd:cd00267 80 Q----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 609248018 165 FAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQ 214
Cdd:cd00267 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
4-214 |
7.97e-43 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 143.10 E-value: 7.97e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRA-RLGISY 82
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPlRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNIwaiienrntlsttekrdllesllgdlglqekrkqpAYTLSGGERRRTEIARSLAIDPHFLLLD 162
Cdd:cd03229 81 VFQDFALFPHLTVLENI-----------------------------------ALGLSGGQQQRVALARALAMDPDVLLLD 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 609248018 163 EPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQ 214
Cdd:cd03229 126 EPTSALDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
5-219 |
1.43e-42 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 142.57 E-value: 1.43e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLgISYLP 84
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK-IAYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 85 QeasvfrklsvedniwaiienrntlsttekrdllesLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEP 164
Cdd:cd03214 80 Q-----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 165 FAGIDPIAVHEIKNIIRILVD-KNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03214 125 TSHLDIAHQIELLELLRRLAReRGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
4-234 |
1.67e-42 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 144.25 E-value: 1.67e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYG-KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMY--RRARLGI 80
Cdd:cd03256 1 IEVENLSKTYPnGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKalRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNI----------WAIIENRNTLSttEKRDLLEsLLGDLGLQEKRKQPAYTLSGGERRRTEIAR 150
Cdd:cd03256 81 GMIFQQFNLIERLSVLENVlsgrlgrrstWRSLFGLFPKE--EKQRALA-ALERVGLLDKAYQRADQLSGGQQQRVAIAR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 151 SLAIDPHFLLLDEPFAGIDPIAVHEIKNIIR-ILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRL 229
Cdd:cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKrINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVL 237
|
....*
gi 609248018 230 aREVY 234
Cdd:cd03256 238 -DEIY 241
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
4-219 |
3.07e-42 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 142.36 E-value: 3.07e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRaRLGIsyL 83
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALR-RIGA--L 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNiwaIIENRNTLSTTEKRdlLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03268 78 IEAPGFYPNLTAREN---LRLLARLLGIRKKR--IDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
4-195 |
3.59e-42 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 142.23 E-value: 3.59e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGisYL 83
Cdd:COG4133 3 LEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLA--YL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNI--WAIIENRNTlstteKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:COG4133 81 GHADGLKPELTVRENLrfWAALYGLRA-----DREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLL 155
|
170 180 190
....*....|....*....|....*....|....
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDKNIGILITDH 195
Cdd:COG4133 156 DEPFTALDAAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
4-219 |
7.59e-42 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 142.26 E-value: 7.59e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY----GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLG 79
Cdd:cd03257 2 LEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 --ISYLPQEA--SVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGD-LGLQEKR-KQPAYTLSGGERRRTEIARSLA 153
Cdd:cd03257 82 keIQMVFQDPmsSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVgVGLPEEVlNRYPHELSGGQRQRVAIARALA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
5-219 |
1.14e-41 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 141.13 E-value: 1.14e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDhvitnLPmYRRARLGISYLP 84
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG-----KP-LEKERKRIGYVP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 85 QEASVFRK--LSVED----NIWAIIENRNTLSTTEKRDLLEsLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHF 158
Cdd:cd03235 75 QRRSIDRDfpISVRDvvlmGLYGHKGLFRRLSKADKAKVDE-ALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 159 LLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIkDGQIVAEG 219
Cdd:cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
4-215 |
1.32e-41 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 141.09 E-value: 1.32e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYG----KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARL- 78
Cdd:cd03255 1 IELKNLSKTYGgggeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 --GISYLPQEASVFRKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDP 156
Cdd:cd03255 81 rrHIGFVFQSFNLLPDLTALENV-ELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 157 HFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNvRDTLEITRRSYIIKDGQI 215
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRELNKEaGTTIVVVTHD-PELAEYADRIIELRDGKI 218
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
4-215 |
3.17e-41 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 139.95 E-value: 3.17e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPM--YRRArlgIS 81
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPpeWRRQ---VA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKlSVEDNIWAIIENRNTLSTTEKrdlLESLLGDLGLQEK-RKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:COG4619 78 YVPQEPALWGG-TVRDNLPFPFQLRERKFDRER---ALELLERLGLPPDiLDKPVERLSGGERQRLALIRALLLQPDVLL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIR-ILVDKNIGILITDHnvrDTLEITR---RSYIIKDGQI 215
Cdd:COG4619 154 LDEPTSALDPENTRRVEELLReYLAEEGRAVLWVSH---DPEQIERvadRVLTLEAGRL 209
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-198 |
1.37e-40 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 139.84 E-value: 1.37e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MST----LQVSNLQKKY----GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITnlpm 72
Cdd:COG1116 1 MSAaapaLELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVT---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 73 yrRARLGISYLPQEASVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSL 152
Cdd:COG1116 77 --GPGPDRGVVFQEPALLPWLTVLDNVALGLELRG-VPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARAL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 609248018 153 AIDPHFLLLDEPFAGIDPI---AVHEIknIIRILVDKNIGIL-ITdHNVR 198
Cdd:COG1116 154 ANDPEVLLMDEPFGALDALtreRLQDE--LLRLWQETGKTVLfVT-HDVD 200
|
|
| PQQ_ABC_ATP |
TIGR03864 |
ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; Members of ... |
4-226 |
1.78e-40 |
|
ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system; Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 274822 [Multi-domain] Cd Length: 236 Bit Score: 138.96 E-value: 1.78e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYl 83
Cdd:TIGR03864 2 LEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQSGQISVAGHDLRRAPRAALARLGVVF- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 pQEASVFRKLSVEDNI--WAIIENrntLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:TIGR03864 81 -QQPTLDLDLSVRQNLryHAALHG---LSRAEARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILV-DKNIGILITDHNVrDTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:TIGR03864 157 DEPTVGLDPASRAAITAHVRALArDQGLSVLWATHLV-DEIEASDRLVVLHRGRVLADGAAAELRG 221
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-227 |
2.05e-40 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 145.05 E-value: 2.05e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MST-LQVSNLQKKY--GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNG---GDILLNDHVITNLPMYR 74
Cdd:COG1123 1 MTPlLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 75 RARLgISYLPQEA-SVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLA 153
Cdd:COG1123 81 RGRR-IGMVFQDPmTQLNPVTVGDQIAEALENLG-LSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILV-DKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:COG1123 159 LDPDLLIADEPTTALDVTTQAEILDLLRELQrERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAA 233
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
4-227 |
2.24e-40 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 138.62 E-value: 2.24e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQvLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRarlGISYL 83
Cdd:cd03299 1 LKVENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR---DISYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLEsLLGDLGLQE--KRKqPAyTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLE-IAEMLGIDHllNRK-PE-TLSGGEQQRVAIARALVVNPKILLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:cd03299 154 DEPFSALDVRTKEKLREELKKIRKEfGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
4-219 |
7.82e-40 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 136.55 E-value: 7.82e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGeVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGisYL 83
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG--YL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVED--NIWAIIENrntLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:cd03264 78 PQEFGVYPNFTVREflDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIV 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDKNIGILITdHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03264 155 DEPTAGLDPEERIRFRNLLSELGEDRIVILST-HIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-218 |
1.12e-39 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 136.33 E-value: 1.12e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MST-LQVSNLQKKYGKK----QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP---- 71
Cdd:COG1136 1 MSPlLELRNLTKSYGTGegevTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSerel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 72 -MYRRARLGisYLPQEASVFRKLSVEDNIW--AIIENRntlSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEI 148
Cdd:COG1136 81 aRLRRRHIG--FVFQFFNLLPELTALENVAlpLLLAGV---SRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 149 ARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNvRDTLEITRRSYIIKDGQIVAE 218
Cdd:COG1136 156 ARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRElGTTIVMVTHD-PELAARADRVIRLRDGRIVSD 225
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-237 |
1.30e-39 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 137.17 E-value: 1.30e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:COG4674 11 LYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLGIGRK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNI-WAIIENRNTLS------TTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDP 156
Cdd:COG4674 91 FQKPTVFEELTVFENLeLALKGDRGVFAslfarlTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQDP 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 157 HFLLLDEPFAGIDPiavHEIKNIIRILVD--KNIGILITDHN---VRDtleITRRSYIIKDGQIVAEGDKAELLKNRLAR 231
Cdd:COG4674 171 KLLLLDEPVAGMTD---AETERTAELLKSlaGKHSVVVVEHDmefVRQ---IARKVTVLHQGSVLAEGSLDEVQADPRVI 244
|
....*.
gi 609248018 232 EVYLGE 237
Cdd:COG4674 245 EVYLGR 250
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
4-226 |
1.41e-39 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 135.35 E-value: 1.41e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGF--IKPNGGDILLNDHVITNLPMYRRARLGIS 81
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITDLPPEERARLGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDNIwaiienrntlsttekRDLLESllgdlglqekrkqpaytLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:cd03217 81 LAFQYPPEIPGVKNADFL---------------RYVNEG-----------------FSGGEKKRNEILQLLLLEPDLAIL 128
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVR--DTLEITrRSYIIKDGQIVAEGDKaELLK 226
Cdd:cd03217 129 DEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRllDYIKPD-RVHVLYDGRIVKSGDK-ELAL 193
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-236 |
1.54e-39 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 136.55 E-value: 1.54e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGI 80
Cdd:PRK11614 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNI--WAIIENRNTLSTTEKR--DLLESLlgdlglQEKRKQPAYTLSGGERRRTEIARSLAIDP 156
Cdd:PRK11614 83 AIVPEGRRVFSRMTVEENLamGGFFAERDQFQERIKWvyELFPRL------HERRIQRAGTMSGGEQQMLAIGRALMSQP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 157 HFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREVYLG 236
Cdd:PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
2-238 |
3.33e-39 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 135.95 E-value: 3.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKY-GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP---MyRRAR 77
Cdd:COG3638 1 PMLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRgraL-RRLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 LGISYLPQEASVFRKLSVEDNI----------WAIIenRNTLSTTEKRDLLEsLLGDLGLQEKRKQPAYTLSGGERRRTE 147
Cdd:COG3638 80 RRIGMIFQQFNLVPRLSVLTNVlagrlgrtstWRSL--LGLFPPEDRERALE-ALERVGLADKAYQRADQLSGGQQQRVA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 148 IARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIR-ILVDKNIGILITDHNVrdtlEITRRsY---II--KDGQIVAEGDK 221
Cdd:COG3638 157 IARALVQEPKLILADEPVASLDPKTARQVMDLLRrIAREDGITVVVNLHQV----DLARR-YadrIIglRDGRVVFDGPP 231
|
250
....*....|....*..
gi 609248018 222 AELLKNRLaREVYLGES 238
Cdd:COG3638 232 AELTDAVL-REIYGGEA 247
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
4-215 |
1.07e-38 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 133.42 E-value: 1.07e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT----NLPMYRRaRLG 79
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTddkkNINELRQ-KVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYlpQEASVFRKLSVEDNI-WAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHF 158
Cdd:cd03262 80 MVF--QQFNLFPHLTVLENItLAPIKVKG-MSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 159 LLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQI 215
Cdd:cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
19-166 |
1.34e-38 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 131.23 E-value: 1.34e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMyRRARLGISYLPQEASVFRKLSVEDN 98
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDER-KSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 609248018 99 IWAIIENRnTLSTTEKRDLLESLLGDLGLQEKRKQPA----YTLSGGERRRTEIARSLAIDPHFLLLDEPFA 166
Cdd:pfam00005 80 LRLGLLLK-GLSKREKDARAEEALEKLGLGDLADRPVgerpGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
4-227 |
1.99e-38 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 133.58 E-value: 1.99e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT----NLPMYRRaRLG 79
Cdd:COG1126 2 IEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTdskkDINKLRR-KVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYlpQEASVFRKLSVEDNIW-AIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHF 158
Cdd:COG1126 81 MVF--QQFNLFPHLTVLENVTlAPIKVKK-MSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKV 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 159 LLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:COG1126 158 MLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFEN 226
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
4-237 |
3.45e-38 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 132.96 E-value: 3.45e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKkQVLRgIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRarlGISYL 83
Cdd:COG3840 2 LRLDDLTYRYGD-FPLR-FDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAER---PVSML 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDlLESLLGDLGLQ--EKRKqPAyTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:COG3840 77 FQENNLFPHLTVAQNIGLGLRPGLKLTAEQRAQ-VEQALERVGLAglLDRL-PG-QLSGGQRQRVALARCLVRKRPILLL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNR----LARevYLG 236
Cdd:COG3840 154 DEPFSALDPALRQEMLDLVDELCRErGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEpppaLAA--YLG 231
|
.
gi 609248018 237 E 237
Cdd:COG3840 232 I 232
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
4-224 |
5.53e-38 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 132.30 E-value: 5.53e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIK-----PNGGDILLNDHVITNL---PMYRR 75
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGKDIYDLdvdVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 76 ARLGISYlpQEASVFRKlSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGL--QEKRKQPAYTLSGGERRRTEIARSLA 153
Cdd:cd03260 81 RRVGMVF--QKPNPFPG-SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALwdEVKDRLHALGLSGGQQQRLCLARALA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILvDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAEL-KKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-233 |
1.22e-37 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 133.39 E-value: 1.22e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MST--LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARL 78
Cdd:PRK13537 3 MSVapIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 GIsyLPQEASVFRKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHF 158
Cdd:PRK13537 83 GV--VPQFDNLDPDFTVRENL-LVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 159 LLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREV 233
Cdd:PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDV 234
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
4-224 |
2.85e-37 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 136.33 E-value: 2.85e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRNtlsTTEKRdlLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:PRK15439 92 PQEPLLFPNLSVKENILFGLPKRQ---ASMQK--MKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:PRK15439 167 PTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
4-171 |
5.41e-37 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 129.51 E-value: 5.41e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYG----KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITnlpmyrRARLG 79
Cdd:cd03293 1 LEVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT------GPGPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFRKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:cd03293 75 RGYVFQQDALLPWLTVLDNV-ALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVL 153
|
170
....*....|..
gi 609248018 160 LLDEPFAGIDPI 171
Cdd:cd03293 154 LLDEPFSALDAL 165
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
4-234 |
5.42e-37 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 130.19 E-value: 5.42e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIK--PNGGDILLNDHVITNLPMYRRARLGIS 81
Cdd:COG0396 1 LEIKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKyeVTSGSILLDGEDILELSPDERARAGIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDNIWAIIENR--NTLSTTEKRDLLESLLGDLGLQEK--RKQPAYTLSGGERRRTEIARSLAIDPH 157
Cdd:COG0396 81 LAFQYPVEIPGVSVSNFLRTALNARrgEELSAREFLKLLKEKMKELGLDEDflDRYVNEGFSGGEKKRNEILQMLLLEPK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 158 FLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVR--DTLEITrRSYIIKDGQIVAEGDKaELLKnRLAREVY 234
Cdd:COG0396 161 LAILDETDSGLDIDALRIVAEGVNKLRSPDRGILIITHYQRilDYIKPD-FVHVLVDGRIVKSGGK-ELAL-ELEEEGY 236
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
23-219 |
5.84e-37 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 129.15 E-value: 5.84e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 23 DFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRArlgISYLPQEASVFRKLSVEDNIwAI 102
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP---VSMLFQENNLFAHLTVEQNV-GL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 103 IENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNII-R 181
Cdd:cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVlD 173
|
170 180 190
....*....|....*....|....*....|....*...
gi 609248018 182 ILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03298 174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
23-236 |
2.35e-36 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 128.16 E-value: 2.35e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 23 DFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRArlgISYLPQEASVFRKLSVEDNIwAI 102
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP---VSMLFQENNLFSHLTVAQNI-GL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 103 IENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIR- 181
Cdd:PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSq 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 182 ILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREVYLG 236
Cdd:PRK10771 175 VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASALLG 229
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
3-224 |
4.00e-36 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 127.84 E-value: 4.00e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRarlGISY 82
Cdd:cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQER---NVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNI---WAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:cd03296 79 VFQHYALFRHMTVFDNVafgLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
3-234 |
4.14e-36 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 128.35 E-value: 4.14e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRA-RLGIs 81
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELArRRAV- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 yLPQEASVFRKLSVEDNIW--AIIenrNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLA------ 153
Cdd:PRK13548 81 -LPQHSSLSFPFTVEEVVAmgRAP---HGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlwepd 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIR------------ILVDKNIGILITDHNVrdtleitrrsyIIKDGQIVAEGDK 221
Cdd:PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARqlaherglavivVLHDLNLAARYADRIV-----------LLHQGRLVADGTP 225
|
250
....*....|...
gi 609248018 222 AELLKNRLAREVY 234
Cdd:PRK13548 226 AEVLTPETLRRVY 238
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
3-228 |
5.11e-36 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 133.74 E-value: 5.11e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKY--GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP--MYRRArl 78
Cdd:COG4987 333 SLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDedDLRRR-- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 gISYLPQEASVFRKlSVEDNI------------WAIienrntLSTTEKRDLLESL-------LGDLGLQekrkqpaytLS 139
Cdd:COG4987 411 -IAVVPQRPHLFDT-TLRENLrlarpdatdeelWAA------LERVGLGDWLAALpdgldtwLGEGGRR---------LS 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 140 GGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEI-KNIIRILVDKNIgILITdHNVRDtLEITRRSYIIKDGQIVAE 218
Cdd:COG4987 474 GGERRRLALARALLRDAPILLLDEPTEGLDAATEQALlADLLEALAGRTV-LLIT-HRLAG-LERMDRILVLEDGRIVEQ 550
|
250
....*....|
gi 609248018 219 GDKAELLKNR 228
Cdd:COG4987 551 GTHEELLAQN 560
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
22-219 |
1.45e-35 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 125.49 E-value: 1.45e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 22 IDFSMhKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVI------TNLPMYRRarlGISYLPQEASVFRKLSV 95
Cdd:cd03297 17 IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLfdsrkkINLPPQQR---KIGLVFQQYALFPHLNV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 96 EDNI-WAIIENRNTlsttEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVH 174
Cdd:cd03297 93 RENLaFGLKRKRNR----EDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 609248018 175 EIKNIIR-ILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03297 169 QLLPELKqIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-231 |
3.31e-35 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 130.52 E-value: 3.31e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITnLPMYRRA-RLGISY 82
Cdd:COG1129 5 LEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVR-FRSPRDAqAAGIAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNIWAIIENRN--TLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:COG1129 84 IHQELNLVPNLSVAENIFLGREPRRggLIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLI 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 609248018 161 LDEPFAGIDPiavHEIKN---IIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAR 231
Cdd:COG1129 164 LDEPTASLTE---REVERlfrIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELTEDELVR 234
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-226 |
7.06e-35 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 124.53 E-value: 7.06e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKK----QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITnlPMYRRARLG 79
Cdd:COG1124 2 LEVRNLSVSYGQGgrrvPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVT--RRRRKAFRR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 -ISYLPQ--EASVFRKLSVEdniWAIIENRNTLSTTEKRDLLESLLGDLGLQE--KRKQPAyTLSGGERRRTEIARSLAI 154
Cdd:COG1124 80 rVQMVFQdpYASLHPRHTVD---RILAEPLRIHGLPDREERIAELLEQVGLPPsfLDRYPH-QLSGGQRQRVAIARALIL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 155 DPHFLLLDEPFAGIDPIAVHEIKNII-RILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:COG1124 156 EPELLLLDEPTSALDVSVQAEILNLLkDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLA 228
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
4-234 |
9.47e-35 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 124.46 E-value: 9.47e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRAR-LGIsy 82
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARrRAV-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDniwaIIE---NRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLA------ 153
Cdd:COG4559 80 LPQHSSLAFPFTVEE----VVAlgrAPHGSSAAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAqlwepv 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 154 -IDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLARE 232
Cdd:COG4559 156 dGGPRWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLER 235
|
..
gi 609248018 233 VY 234
Cdd:COG4559 236 VY 237
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-233 |
1.40e-34 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 126.48 E-value: 1.40e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIllndhVITNLPMYRRARL---GI 80
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI-----TVLGVPVPARARLaraRI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNIwaIIENRN-TLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:PRK13536 117 GVVPQFDNLDLEFTVRENL--LVFGRYfGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLL 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREV 233
Cdd:PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQV 268
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-170 |
4.24e-34 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 125.19 E-value: 4.24e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRarlGI 80
Cdd:COG3839 1 MASLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKDR---NI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNIwAI-IENRNtLSTTEKRDLLESLLGDLGLQE--KRKqPAyTLSGGERRRTEIARSLAIDPH 157
Cdd:COG3839 78 AMVFQSYALYPHMTVYENI-AFpLKLRK-VPKAEIDRRVREAAELLGLEDllDRK-PK-QLSGGQRQRVALGRALVREPK 153
|
170
....*....|...
gi 609248018 158 FLLLDEPFAGIDP 170
Cdd:COG3839 154 VFLLDEPLSNLDA 166
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
4-219 |
5.11e-34 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 121.71 E-value: 5.11e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKK----QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLG 79
Cdd:cd03266 2 ITADALTKRFRDVkktvQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 IsyLPQEASVFRKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:cd03266 82 F--VSDSTGLYDRLTARENL-EYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03266 159 LLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
4-214 |
5.19e-34 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 120.18 E-value: 5.19e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYG--KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPM--YRRArlg 79
Cdd:cd03228 1 IEFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLesLRKN--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFrKLSVEDNIwaiienrntlsttekrdllesllgdlglqekrkqpaytLSGGERRRTEIARSLAIDPHFL 159
Cdd:cd03228 78 IAYVPQDPFLF-SGTIRENI--------------------------------------LSGGQRQRIAIARALLRDPPIL 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITdHNVrDTLEITRRSYIIKDGQ 214
Cdd:cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIA-HRL-STIRDADRIIVLDDGR 171
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-169 |
1.27e-33 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 121.89 E-value: 1.27e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGK----KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNlPMYRRA 76
Cdd:COG4525 1 MSMLTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG-PGADRG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 77 rlgisylpqeaSVFRK------LSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIAR 150
Cdd:COG4525 80 -----------VVFQKdallpwLNVLDNV-AFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIAR 147
|
170
....*....|....*....
gi 609248018 151 SLAIDPHFLLLDEPFAGID 169
Cdd:COG4525 148 ALAADPRFLLMDEPFGALD 166
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-227 |
3.25e-33 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 126.03 E-value: 3.25e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKY-GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLgI 80
Cdd:COG4988 335 PSIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQ-I 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFrKLSVEDNI------------WAIIENRNTLS-TTEKRDLLESLLGDLGLQekrkqpaytLSGGERRRTE 147
Cdd:COG4988 414 AWVPQNPYLF-AGTIRENLrlgrpdasdeelEAALEAAGLDEfVAALPDGLDTPLGEGGRG---------LSGGQAQRLA 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 148 IARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILIT--DHNVRDTLEItrrsYIIKDGQIVAEGDKAELL 225
Cdd:COG4988 484 LARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILIThrLALLAQADRI----LVLDDGRIVEQGTHEELL 559
|
..
gi 609248018 226 KN 227
Cdd:COG4988 560 AK 561
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-227 |
3.40e-33 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 120.63 E-value: 3.40e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVI-TNLPM------Y 73
Cdd:PRK11264 1 MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIdTARSLsqqkglI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 74 RRARLGISYLPQEASVFRKLSVEDNIwaiIENRNTLSTTEKRDLLE---SLLGDLGLQEKRKQPAYTLSGGERRRTEIAR 150
Cdd:PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENI---IEGPVIVKGEPKEEATArarELLAKVGLAGKETSYPRRLSGGQQQRVAIAR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 151 SLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
4-169 |
5.17e-33 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 119.26 E-value: 5.17e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRarlGISYL 83
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKR---PVNTV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESL-LGDLGLQEKRKqPAyTLSGGERRRTEIARSLAIDPHFLLLD 162
Cdd:cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALdLVQLEGYANRK-PS-QLSGGQQQRVAIARALVNEPKVLLLD 155
|
....*..
gi 609248018 163 EPFAGID 169
Cdd:cd03300 156 EPLGALD 162
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-218 |
5.23e-33 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 117.14 E-value: 5.23e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQeasvfrklsvedniwaiienrntlsttekrdllesllgdlglqekrkqpaytLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03216 81 YQ----------------------------------------------------LSVGERQMVEIARALARNARLLILDE 108
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAE 218
Cdd:cd03216 109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-225 |
5.94e-33 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 119.80 E-value: 5.94e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTcFYSIV-GFIKPN-GGDILLNDHV-----ITNLpmyrRA 76
Cdd:COG1119 4 LELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKST-LLSLItGDLPPTyGNDVRLFGERrggedVWEL----RK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 77 RLGISYlpqeASVFRKLSVEDNIWAIIenrntLS------------TTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERR 144
Cdd:COG1119 79 RIGLVS----PALQLRFPRDETVLDVV-----LSgffdsiglyrepTDEQRERARELLELLGLAHLADRPFGTLSQGEQR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 145 RTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILV---DKNIgILITdHNVRDTLEITRRSYIIKDGQIVAEGDK 221
Cdd:COG1119 150 RVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAaegAPTL-VLVT-HHVEEIPPGITHVLLLKDGRVVAAGPK 227
|
....
gi 609248018 222 AELL 225
Cdd:COG1119 228 EEVL 231
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
3-170 |
1.04e-32 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 117.97 E-value: 1.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPN---GGDILLNDHVITNLPMYRRaRLG 79
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTALPAEQR-RIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 IsyLPQEASVFRKLSVEDNI-WAIienRNTLSTTEKRDLLESLLGDLGLQEK-RKQPAyTLSGGERRRTEIARSLAIDPH 157
Cdd:COG4136 80 I--LFQDDLLFPHLSVGENLaFAL---PPTIGRAQRRARVEQALEEAGLAGFaDRDPA-TLSGGQRARVALLRALLAEPR 153
|
170
....*....|...
gi 609248018 158 FLLLDEPFAGIDP 170
Cdd:COG4136 154 ALLLDEPFSKLDA 166
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
4-227 |
1.21e-32 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 118.66 E-value: 1.21e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLND-HVITNLPMYRRARLGISY 82
Cdd:PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGlKVNDPKVDERLIRQEAGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNI-WAIIENRNTlSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:PRK09493 82 VFQQFYLFPHLTALENVmFGPLRVRGA-SKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
11-219 |
1.62e-32 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 118.20 E-value: 1.62e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 11 KKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDhvitNLPMYRR----ARLGIsYLPQE 86
Cdd:cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG----LVPWKRRkkflRRIGV-VFGQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 87 ASVFRKLSVEDNiWAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFA 166
Cdd:cd03267 104 TQLWWDLPVIDS-FYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 609248018 167 GIDPIAVHEIKNIIRILV-DKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03267 183 GLDVVAQENIRNFLKEYNrERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
4-223 |
8.08e-32 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 115.92 E-value: 8.08e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY-GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNL-----PMYRRaR 77
Cdd:COG2884 2 IRFENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLkrreiPYLRR-R 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 LGISYlpQEASVFRKLSVEDNIwA----IIEnrntLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLA 153
Cdd:COG2884 81 IGVVF--QDFRLLPDRTVYENV-AlplrVTG----KSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEiknIIRILVDKN---IGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAE 223
Cdd:COG2884 154 NRPELLLADEPTGNLDPETSWE---IMELLEEINrrgTTVLIATHDLELVDRMPKRVLELEDGRLVRDEARGV 223
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
4-234 |
1.21e-31 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 116.21 E-value: 1.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGfiKPN----GGDILLNDHVITNLPMYRRARLG 79
Cdd:TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSyevtSGTILFKGQDLLELEPDERARAG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFRKLSVEDNIWAII------ENRNTLSTTEKRDLLESLLGDLGLQEK--RKQPAYTLSGGERRRTEIARS 151
Cdd:TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALnarrsaRGEEPLDLLDFEKLLKEKLALLDMDEEflNRSVNEGFSGGEKKRNEILQM 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 152 LAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEIT-RRSYIIKDGQIVAEGDKAelLKNRLA 230
Cdd:TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKpDYVHVLLDGRIVKSGDVE--LAKELE 236
|
....
gi 609248018 231 REVY 234
Cdd:TIGR01978 237 AKGY 240
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
4-228 |
1.14e-30 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 119.17 E-value: 1.14e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYG--KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPM--YRRArlg 79
Cdd:COG2274 474 IELENVSFRYPgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPasLRRQ--- 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFRKlSVEDNI------------WAIIENRNTLSTTEKRDL-LESLLGDLGLqekrkqpayTLSGGERRRT 146
Cdd:COG2274 551 IGVVLQDVFLFSG-TIRENItlgdpdatdeeiIEAARLAGLHDFIEALPMgYDTVVGEGGS---------NLSGGQRQRL 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 147 EIARSLAIDPHFLLLDEPFAGIDPIAVHEI-KNIIRILVDKNIgILITdHNvRDTLEITRRSYIIKDGQIVAEGDKAELL 225
Cdd:COG2274 621 AIARALLRNPRILILDEATSALDAETEAIIlENLRRLLKGRTV-IIIA-HR-LSTIRLADRIIVLDKGRIVEDGTHEELL 697
|
...
gi 609248018 226 KNR 228
Cdd:COG2274 698 ARK 700
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
14-231 |
1.94e-30 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 113.71 E-value: 1.94e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 14 GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHvitNLPMYRRARL-----GISYLPQEAS 88
Cdd:PRK11831 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE---NIPAMSRSRLytvrkRMSMLFQSGA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 89 VFRKLSVEDNI-WAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAG 167
Cdd:PRK11831 95 LFTDMNVFDNVaYPLREHTQ-LPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVG 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 168 IDPIAVHEIKNIIRILvDKNIGI--LITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAR 231
Cdd:PRK11831 174 QDPITMGVLVKLISEL-NSALGVtcVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPR 238
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-231 |
3.54e-30 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 117.05 E-value: 3.54e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTT---CFYsivGFIKPNGGDILLNDH--VITNlPmyRRA-R 77
Cdd:COG3845 6 LELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTlmkILY---GLYQPDSGEILIDGKpvRIRS-P--RDAiA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 LGISYLPQEASVFRKLSVEDNIWAIIENRNT--LSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAID 155
Cdd:COG3845 80 LGIGMVHQHFMLVPNLTVAENIVLGLEPTKGgrLDRKAARARIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKALYRG 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 156 PHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAR 231
Cdd:COG3845 160 ARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETSEEELAE 235
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
4-227 |
3.60e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 113.25 E-value: 3.60e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGK-KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT---NLPMYRRARLG 79
Cdd:PRK13639 2 LETRDLKYSYPDgTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKydkKSLLEVRKTVG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFRKLSVEDNIWAIIENRNTLSTTEKRdlLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR--VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-229 |
4.06e-30 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 112.49 E-value: 4.06e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGK-----KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARL 78
Cdd:COG1101 2 LELKNLSKTFNPgtvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAKY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 gISYlpqeasVFR--------KLSVEDNIwAIIENRN---TLS---TTEKRDLLESLLGDLGLQ-EKR-KQPAYTLSGGE 142
Cdd:COG1101 82 -IGR------VFQdpmmgtapSMTIEENL-ALAYRRGkrrGLRrglTKKRRELFRELLATLGLGlENRlDTKVGLLSGGQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 143 RRrteiARSLAI----DPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKN--IGILITdHNVRDTLEITRRSYIIKDGQIV 216
Cdd:COG1101 154 RQ----ALSLLMatltKPKLLLLDEHTAALDPKTAALVLELTEKIVEENnlTTLMVT-HNMEQALDYGNRLIMMHEGRII 228
|
250
....*....|....*.
gi 609248018 217 ---AEGDKAELLKNRL 229
Cdd:COG1101 229 ldvSGEEKKKLTVEDL 244
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
4-227 |
7.43e-30 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 111.62 E-value: 7.43e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGK-KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARlGISY 82
Cdd:cd03295 1 IEFENVTKRYGGgKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR-KIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEK--RKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:cd03295 80 VIQQIGLFPHMTVEENI-ALVPKLLKWPKEKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPLLL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 161 LDEPFAGIDPIAVHEI-KNIIRI--LVDKNIgILITdHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:cd03295 159 MDEPFGALDPITRDQLqEEFKRLqqELGKTI-VFVT-HDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
4-231 |
1.10e-29 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 114.16 E-value: 1.10e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRArlgISYL 83
Cdd:PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP---INMM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:PRK11607 97 FQSYALFPHMTVEQNI-AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 164 PFAGIDPIAVHEIK-NIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAR 231
Cdd:PRK11607 176 PMGALDKKLRDRMQlEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTR 244
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
22-225 |
3.03e-29 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 112.50 E-value: 3.03e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 22 IDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHV------ITNLPMYRRaRLGisYLPQEASVFRKLSV 95
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVlqdsarGIFLPPHRR-RIG--YVFQEARLFPHLSV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 96 EDNI----WAIIENRNTLSTTEKRDLLEslLGDLgLqeKRKqPAyTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPI 171
Cdd:COG4148 95 RGNLlygrKRAPRAERRISFDEVVELLG--IGHL-L--DRR-PA-TLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 172 AVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELL 225
Cdd:COG4148 168 RKAEILPYLERLRDElDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVL 222
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
4-225 |
3.78e-29 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 110.48 E-value: 3.78e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGI--DFSMHKgeVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVitnLPMYRRARLGIS 81
Cdd:PRK13638 2 LATSDLWFRYQDEPVLKGLnlDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKP---LDYSKRGLLALR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 ylPQEASVFRK-------LSVEDNIWAIIENRNTLSTTEKRDLLESL-LGDLglQEKRKQPAYTLSGGERRRTEIARSLA 153
Cdd:PRK13638 77 --QQVATVFQDpeqqifyTDIDSDIAFSLRNLGVPEAEITRRVDEALtLVDA--QHFRHQPIQCLSHGQKKRVAIAGALV 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELL 225
Cdd:PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-239 |
1.00e-28 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 111.86 E-value: 1.00e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLgI 80
Cdd:PRK09536 1 MPMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR-V 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASvfrkLSVEDNIWAIIE-------NRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLA 153
Cdd:PRK09536 80 ASVPQDTS----LSFEFDVRQVVEmgrtphrSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 154 IDPHFLLLDEPFAGIDpiAVHEIKNI--IRILVDKNIGILITDHNvrdtLEITRRsY-----IIKDGQIVAEGDKAELLK 226
Cdd:PRK09536 156 QATPVLLLDEPTASLD--INHQVRTLelVRRLVDDGKTAVAAIHD----LDLAAR-YcdelvLLADGRVRAAGPPADVLT 228
|
250
....*....|...
gi 609248018 227 NRLAREVYLGESF 239
Cdd:PRK09536 229 ADTLRAAFDARTA 241
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
8-225 |
1.45e-28 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 110.59 E-value: 1.45e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 8 NLQKKYGKKQVlrGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITN------LPMYRRArlgIS 81
Cdd:TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDsrkgifLPPEKRR---IG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDNIwaiIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:TIGR02142 79 YVFQEARLFPHLSVRGNL---RYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLM 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELL 225
Cdd:TIGR02142 156 DEPLAALDDPRKYEILPYLERLHAEfGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-227 |
1.93e-28 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 109.37 E-value: 1.93e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY----GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNG---GDILLNDHVITNLP--MYR 74
Cdd:COG0444 2 LEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGitsGEILFDGEDLLKLSekELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 75 RARLG-ISYLPQEAS-----VFRklsVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQ--EKRKQpAY--TLSGGERR 144
Cdd:COG0444 82 KIRGReIQMIFQDPMtslnpVMT---VGDQIAEPLRIHGGLSKAEARERAIELLERVGLPdpERRLD-RYphELSGGMRQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 145 RTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGIL-ITdHN---VRdtlEITRRSYIIKDGQIVAEG 219
Cdd:COG0444 158 RVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILfIT-HDlgvVA---EIADRVAVMYAGRIVEEG 233
|
....*...
gi 609248018 220 DKAELLKN 227
Cdd:COG0444 234 PVEELFEN 241
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
13-206 |
4.28e-28 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 105.39 E-value: 4.28e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 13 YGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILlndhvitnlpmyRRARLGISYLPQEASVFRK 92
Cdd:NF040873 2 YGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVR------------RAGGARVAYVPQRSEVPDS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 93 L--SVEDNI----WAiienRNTLS---TTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:NF040873 70 LplTVRDLVamgrWA----RRGLWrrlTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDE 145
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRR 206
Cdd:NF040873 146 PTTGLDAESRERIIALLAEEHARGATVVVVTHDLELVRRADPC 188
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
14-228 |
4.54e-28 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 111.41 E-value: 4.54e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 14 GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPM--YRRArlgISYLPQEASVFr 91
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLesLRRQ---IGVVPQDTFLF- 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 92 KLSVEDNI---------------------WAIIEnrntlsttEKRDLLESLLGDLGLqekrkqpayTLSGGERRRTEIAR 150
Cdd:COG1132 427 SGTIRENIrygrpdatdeeveeaakaaqaHEFIE--------ALPDGYDTVVGERGV---------NLSGGQRQRIAIAR 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 151 SLAIDPHFLLLDEPFAGIDPIAVHEI-KNIIRILVDKNIgILITdHN---VRDTLEItrrsYIIKDGQIVAEGDKAELLK 226
Cdd:COG1132 490 ALLKDPPILILDEATSALDTETEALIqEALERLMKGRTT-IVIA-HRlstIRNADRI----LVLDDGRIVEQGTHEELLA 563
|
..
gi 609248018 227 NR 228
Cdd:COG1132 564 RG 565
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
4-227 |
8.43e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 107.48 E-value: 8.43e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKK-----QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLN--------------- 63
Cdd:PRK13651 3 IKVKNIVKIFNKKlptelKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIfkdeknkkktkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 64 --DHVITNLPMYR--------RARLGISYLPQEASVFRKLSVEDNIWAIIENrnTLSTTEKRDLLESLLGDLGLQEK--R 131
Cdd:PRK13651 83 vlEKLVIQKTRFKkikkikeiRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM--GVSKEEAKKRAAKYIELVGLDESylQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 132 KQPaYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIK 211
Cdd:PRK13651 161 RSP-FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFK 239
|
250
....*....|....*.
gi 609248018 212 DGQIVAEGDKAELLKN 227
Cdd:PRK13651 240 DGKIIKDGDTYDILSD 255
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
5-234 |
1.22e-27 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 105.94 E-value: 1.22e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLgISYLP 84
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKR-LAILR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 85 QEASVFRKLSVEDniwaiienrntL------------STTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSL 152
Cdd:COG4604 82 QENHINSRLTVRE-----------LvafgrfpyskgrLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 153 AIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVD---KNIGILITDHNV----RDtleitrrsYII--KDGQIVAEGDKAE 223
Cdd:COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADelgKTVVIVLHDINFascyAD--------HIVamKDGRVVAQGTPEE 222
|
250
....*....|.
gi 609248018 224 LLKNRLAREVY 234
Cdd:COG4604 223 IITPEVLSDIY 233
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-164 |
2.03e-27 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 109.38 E-value: 2.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVItnlpmyrrarlgISYL 83
Cdd:COG0488 316 LELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGETVK------------IGYF 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFR-KLSVEDNIWAIIENrntLSTTEKRDLLESLL--GDlglqeKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:COG0488 384 DQHQEELDpDKTVLDELRDGAPG---GTEQEVRGYLGRFLfsGD-----DAFKPVGVLSGGEKARLALAKLLLSPPNVLL 455
|
....
gi 609248018 161 LDEP 164
Cdd:COG0488 456 LDEP 459
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-235 |
2.36e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 105.66 E-value: 2.36e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKY-GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT--NLPMYRRAr 77
Cdd:PRK13652 1 MHLIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITkeNIREVRKF- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 LGISYLPQEASVFRKLSVEDNIWAIIENRNTLSTTEKRdlLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPH 157
Cdd:PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR--VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 158 FLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL-LKNRLAREVYL 235
Cdd:PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIfLQPDLLARVHL 237
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
4-227 |
2.50e-27 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 105.44 E-value: 2.50e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITnlpMYR--------- 74
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN---LVRdkdgqlkva 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 75 --------RARLGISYlpQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEKR--KQPAYtLSGGERR 144
Cdd:PRK10619 83 dknqlrllRTRLTMVF--QHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAqgKYPVH-LSGGQQQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 145 RTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
...
gi 609248018 225 LKN 227
Cdd:PRK10619 240 FGN 242
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
4-216 |
2.70e-27 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 103.87 E-value: 2.70e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRarlGISYL 83
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR---DIAMV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLES--LLG-DLGLQEKRKQpaytLSGGERRRTEIARSLAIDPHFLL 160
Cdd:cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVaeLLQiEHLLDRKPKQ----LSGGQRQRVALGRAIVREPKVFL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 161 LDEPFAGIDPIAVHEIKN-IIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIV 216
Cdd:cd03301 154 MDEPLSNLDAKLRVQMRAeLKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-215 |
4.92e-27 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 102.51 E-value: 4.92e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYgkkqVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:cd03215 5 LEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 P---QEASVFRKLSVEDNIwaiienrntlsttekrdllesLLGDLglqekrkqpaytLSGGERRRTEIARSLAIDPHFLL 160
Cdd:cd03215 81 PedrKREGLVLDLSVAENI---------------------ALSSL------------LSGGNQQKVVLARWLARDPRVLI 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQI 215
Cdd:cd03215 128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
5-216 |
8.38e-27 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 102.34 E-value: 8.38e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKYGKKQ-VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITnlpmYRRARLGISYL 83
Cdd:cd03226 1 RIENISFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK----AKERRKSIGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEasVFRKL---SVEDNIwaIIENRNTLSTTEKrdlLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:cd03226 77 MQD--VDYQLftdSVREEL--LLGLKELDAGNEQ---AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIV 216
Cdd:cd03226 150 FDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-224 |
9.39e-27 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 107.41 E-value: 9.39e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLqkkyGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITnLPMYRRA-RLGISY 82
Cdd:COG1129 257 LEVEGL----SVGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVR-IRSPRDAiRAGIAY 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LP---QEASVFRKLSVEDNI----WAIIENRNTLSTTEKRDLLESLLGDLGLqeK---RKQPAYTLSGGERRRTEIARSL 152
Cdd:COG1129 332 VPedrKGEGLVLDLSIRENItlasLDRLSRGGLLDRRRERALAEEYIKRLRI--KtpsPEQPVGNLSGGNQQKVVLAKWL 409
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 153 AIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGIL-ITDhnvrDTLEITR---RSYIIKDGQIVAEGDKAEL 224
Cdd:COG1129 410 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAVIvISS----ELPELLGlsdRILVMREGRIVGELDREEA 481
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
9-227 |
1.42e-26 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 104.40 E-value: 1.42e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 9 LQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVitnlPMYRRARlgisYLPQEAS 88
Cdd:COG4586 28 FRREYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYV----PFKRRKE----FARRIGV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 89 VF-RK------LSVEDN------IWAIienrntlSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAID 155
Cdd:COG4586 100 VFgQRsqlwwdLPAIDSfrllkaIYRI-------PDAEYKKRLDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHR 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 156 PHFLLLDEPFAGIDPIAVHEIKNIIRILV-DKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:COG4586 173 PKILFLDEPTIGLDVVSKEAIREFLKEYNrERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKER 245
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-164 |
1.57e-26 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 106.69 E-value: 1.57e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 6 VSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIllndhvitnlpmYRRARLGISYLPQ 85
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEV------------SIPKGLRIGYLPQ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 86 EASVFRKLSVEDNI-------WAIIENRNTLST---------------TEKRDLL---------ESLLGDLGL-QEKRKQ 133
Cdd:COG0488 69 EPPLDDDLTVLDTVldgdaelRALEAELEELEAklaepdedlerlaelQEEFEALggweaearaEEILSGLGFpEEDLDR 148
|
170 180 190
....*....|....*....|....*....|.
gi 609248018 134 PAYTLSGGERRRTEIARSLAIDPHFLLLDEP 164
Cdd:COG0488 149 PVSELSGGWRRRVALARALLSEPDLLLLDEP 179
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
2-225 |
1.13e-25 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 101.04 E-value: 1.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKY---------GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNL-P 71
Cdd:TIGR02769 1 SLLEVRDVTHTYrtgglfgakQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLdR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 72 MYRRA-RLGISYLPQEA--SVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEK--RKQPAyTLSGGERRRT 146
Cdd:TIGR02769 81 KQRRAfRRDVQLVFQDSpsAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEdaDKLPR-QLSGGQLQRI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 147 EIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELL 225
Cdd:TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAfGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
4-228 |
1.48e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 101.08 E-value: 1.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGK-KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLN----DHVITNLpMYRRARL 78
Cdd:PRK13636 6 LKVEELNYNYSDgTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDgkpiDYSRKGL-MKLRESV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 GISYLPQEASVFRKLSVEDNIWAIIENRntLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHF 158
Cdd:PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLK--LPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 159 LLLDEPFAGIDPIAVHEI-KNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNR 228
Cdd:PRK13636 163 LVLDEPTAGLDPMGVSEImKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
1-222 |
2.13e-25 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 99.70 E-value: 2.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MStLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHV--ITNLPMYRRARL 78
Cdd:COG4161 1 MS-IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQfdFSQKPSEKAIRL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 gisyLPQEAS-VFRK------LSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARS 151
Cdd:COG4161 80 ----LRQKVGmVFQQynlwphLTVMENLIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 152 LAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVrdtlEITRR--SYII--KDGQIVAEGDKA 222
Cdd:COG4161 156 LMMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEV----EFARKvaSQVVymEKGRIIEQGDAS 226
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
19-234 |
2.37e-25 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 99.91 E-value: 2.37e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIkPNGGDILLNDHVITNLPMYRRARLGiSYLPQEAS------VFR- 91
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAAELARHR-AYLSQQQSppfampVFQy 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 92 -KLSVEDNiwaiienrntLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSL-----AIDPH--FLLLDE 163
Cdd:COG4138 90 lALHQPAG----------ASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwpTINPEgqLLLLDE 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 164 PFAGIDpIAvHEIK--NIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREVY 234
Cdd:COG4138 160 PMNSLD-VA-QQAAldRLLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVF 230
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
19-213 |
2.95e-25 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 99.08 E-value: 2.95e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNlPMYRRARLGISYlpqeaSVFRKLSVEDN 98
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE-PGPDRMVVFQNY-----SLLPWLTVREN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 99 IW-AIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIK 177
Cdd:TIGR01184 75 IAlAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154
|
170 180 190
....*....|....*....|....*....|....*..
gi 609248018 178 N-IIRILVDKNIGILITDHNVRDTLEITRRSYIIKDG 213
Cdd:TIGR01184 155 EeLMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
4-196 |
2.95e-25 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 99.73 E-value: 2.95e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTT---CF---------YSIVGFIKPNGGDILLNDhviTNLP 71
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTllrCLnrmndlipgARVEGEILLDGEDIYDPD---VDVV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 72 MYRRaRLGIsylpqeasVFRK-----LSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGL----QEKRKQPAYTLSGGE 142
Cdd:COG1117 89 ELRR-RVGM--------VFQKpnpfpKSIYDNVAYGLRLHGIKSKSELDEIVEESLRKAALwdevKDRLKKSALGLSGGQ 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 609248018 143 RRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVdKNIGILITDHN 196
Cdd:COG1117 160 QQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELK-KDYTIVIVTHN 212
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
5-227 |
3.04e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 100.07 E-value: 3.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKYG--KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT--NLPmYRRARLGI 80
Cdd:PRK13632 9 KVENVSFSYPnsENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISkeNLK-EIRKKIGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYlpQEA-SVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:PRK13632 88 IF--QNPdNQFIGATVEDDIAFGLENKK-VPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVDKNIGILIT-DHNVRdtlEITRRSYII--KDGQIVAEGDKAELLKN 227
Cdd:PRK13632 165 IFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISiTHDMD---EAILADKVIvfSEGKLIAQGKPKEILNN 232
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
4-219 |
3.48e-25 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 97.38 E-value: 3.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYG--KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARlgIS 81
Cdd:cd03247 1 LSINNVSFSYPeqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL--IS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFrklsvedniwaiienrntlSTTekrdllesLLGDLGLQekrkqpaytLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:cd03247 79 VLNQRPYLF-------------------DTT--------LRNNLGRR---------FSGGERQRLALARILLQDAPIVLL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 162 DEPFAGIDPIAVHEIKNII-RILVDKNIgILITDHNVrdTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03247 123 DEPTVGLDPITERQLLSLIfEVLKDKTL-IWITHHLT--GIEHMDKILFLENGKIIMQG 178
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
20-231 |
3.81e-25 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 102.82 E-value: 3.81e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 20 RGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYLP---QEASVFRKLSVE 96
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPedrQSSGLYLDAPLA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 97 DNIWAIIENRNTLSTTEKRD--LLESLLGDLGLQ-EKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAV 173
Cdd:PRK15439 360 WNVCALTHNRRGFWIKPAREnaVLERYRRALNIKfNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSAR 439
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 174 HEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAR 231
Cdd:PRK15439 440 NDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMR 497
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
4-169 |
3.82e-25 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 99.39 E-value: 3.82e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLnDHVITNLPMYRRarlGISYl 83
Cdd:PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL-DGKPVEGPGAER---GVVF- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 pQEASVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:PRK11248 77 -QNEGLLPWRNVQDNVAFGLQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE 154
|
....*.
gi 609248018 164 PFAGID 169
Cdd:PRK11248 155 PFGALD 160
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
3-196 |
5.03e-25 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 98.02 E-value: 5.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITnLPMYRRArlgISY 82
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID-DPDVAEA---CHY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNI--WAIIENRNTLSttekrdlLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:PRK13539 78 LGHRNAMKPALTVAENLefWAAFLGGEELD-------IAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWI 150
|
170 180 190
....*....|....*....|....*....|....*.
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHN 196
Cdd:PRK13539 151 LDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
4-231 |
8.80e-25 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 101.78 E-value: 8.80e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWA------IIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPH 157
Cdd:PRK09700 86 YQELSVIDELTVLENLYIgrhltkKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 609248018 158 FLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAR 231
Cdd:PRK09700 166 VIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVR 239
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1-237 |
9.57e-25 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 100.16 E-value: 9.57e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MStLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRaRLGI 80
Cdd:PRK10851 1 MS-IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDR-KVGF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYlpQEASVFRKLSVEDNI---WAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPH 157
Cdd:PRK10851 79 VF--QHYALFRHMTVFDNIafgLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 158 FLLLDEPFAGIDPIAVHEIKNIIRILVD--KNIGILITdHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREV-- 233
Cdd:PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEelKFTSVFVT-HDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVle 235
|
....
gi 609248018 234 YLGE 237
Cdd:PRK10851 236 FMGE 239
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
8-227 |
1.07e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 98.63 E-value: 1.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 8 NLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGF-IKPNG----GDILLNDHVITNLPMYRRARLGISY 82
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMnDKVSGyrysGDVLLGGRSIFNYRDVLEFRRRVGM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFrKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGL----QEKRKQPAYTLSGGERRRTEIARSLAIDPHF 158
Cdd:PRK14271 106 LFQRPNPF-PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLwdavKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 159 LLLDEPFAGIDPIAVHEIKNIIRILVDKnIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK14271 185 LLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
4-217 |
1.39e-24 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 97.04 E-value: 1.39e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY--GKK--QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARL- 78
Cdd:TIGR02211 2 LKCENLGKRYqeGKLdtRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 ----GISYlpQEASVFRKLSVEDNIW--AIIENRntlSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSL 152
Cdd:TIGR02211 82 nkklGFIY--QFHHLLPDFTALENVAmpLLIGKK---SVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 153 AIDPHFLLLDEPFAGIDPIAVHEIKNIIRIL-VDKNIGILITDHNVRDTLEITRRsYIIKDGQIVA 217
Cdd:TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELnRELNTSFLVVTHDLELAKKLDRV-LEMKDGQLFN 221
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
4-228 |
1.87e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 97.88 E-value: 1.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGK-KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR-RARLGIS 81
Cdd:PRK13647 5 IEVEDLHFRYKDgTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWvRSKVGLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDNIWAIIENRNTLSTTEKRdlLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:PRK13647 85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR--VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKaELLKNR 228
Cdd:PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDE 228
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
2-234 |
2.57e-24 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 97.01 E-value: 2.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARlGIS 81
Cdd:PRK11231 1 MTLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR-RLA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVED----------NIWAIIenrntlsTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARS 151
Cdd:PRK11231 80 LLPQHHLTPEGITVRElvaygrspwlSLWGRL-------SAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 152 LAIDPHFLLLDEPFAGIDpiAVHEI-------------KNIIRILVDKNIGILITDHNVrdtleitrrsyIIKDGQIVAE 218
Cdd:PRK11231 153 LAQDTPVVLLDEPTTYLD--INHQVelmrlmrelntqgKTVVTVLHDLNQASRYCDHLV-----------VLANGHVMAQ 219
|
250
....*....|....*.
gi 609248018 219 GDKAELLKNRLAREVY 234
Cdd:PRK11231 220 GTPEEVMTPGLLRTVF 235
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
6-227 |
4.02e-24 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 96.11 E-value: 4.02e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 6 VSNLQKKYG----KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP--MYRRARLG 79
Cdd:cd03258 4 LKNVSKVFGdtggKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSgkELRKARRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFRKLSVEDNIWAIIEnrntLSTTEKRDLLE---SLLGDLGLQEKRKqpAY--TLSGGERRRTEIARSLAI 154
Cdd:cd03258 84 IGMIFQHFNLLSSRTVFENVALPLE----IAGVPKAEIEErvlELLELVGLEDKAD--AYpaQLSGGQKQRVGIARALAN 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 609248018 155 DPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
10-219 |
4.46e-24 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 95.80 E-value: 4.46e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 10 QKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNG---GDILLNDHVITNLPMYRRarlgISYLPQE 86
Cdd:cd03234 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQPRKPDQFQKC----VAYVRQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 87 ASVFRKLSVEDNIW--AIIENRNTLSTTEKRDLLE-SLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03234 90 DILLPGLTVRETLTytAILRLPRKSSDAIRKKRVEdVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDE 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVR-DTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03234 170 PTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRsDLFRLFDRILLLSSGEIVYSG 226
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1-227 |
4.80e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 97.04 E-value: 4.80e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MStLQVSNLQKKYGK-----KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT----NLP 71
Cdd:PRK13637 1 MS-IKIENLTHIYMEgtpfeKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITdkkvKLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 72 MYRRaRLGISYLPQEASVFRKlSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQE---KRKQPaYTLSGGERRRTEI 148
Cdd:PRK13637 80 DIRK-KVGLVFQYPEYQLFEE-TIEKDIAFGPINLG-LSEEEIENRVKRAMNIVGLDYedyKDKSP-FELSGGQKRRVAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 149 ARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
3-170 |
8.80e-24 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 98.97 E-value: 8.80e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKY-GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLgIS 81
Cdd:TIGR02868 334 TLELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR-VS 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKlSVEDNIWAiieNRNTLSTTEKRDLLESL-LGDL------GLQEKRKQPAYTLSGGERRRTEIARSLAI 154
Cdd:TIGR02868 413 VCAQDAHLFDT-TVRENLRL---ARPDATDEELWAALERVgLADWlralpdGLDTVLGEGGARLSGGERQRLALARALLA 488
|
170
....*....|....*.
gi 609248018 155 DPHFLLLDEPFAGIDP 170
Cdd:TIGR02868 489 DAPILLLDEPTEHLDA 504
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
14-231 |
1.01e-23 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 99.05 E-value: 1.01e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 14 GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNlpmYRRARLG--ISYLPQEASVFR 91
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQ---WDREELGrhIGYLPQDVELFD 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 92 KlSVEDNIwAiienRNTLSTTEK----------RDLLESL-------LGDLGLqekrkqpayTLSGGERRRTEIARSLAI 154
Cdd:COG4618 420 G-TIAENI-A----RFGDADPEKvvaaaklagvHEMILRLpdgydtrIGEGGA---------RLSGGQRQRIGLARALYG 484
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 155 DPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRdTLEITRRSYIIKDGQIVAEGDKAELLKnRLAR 231
Cdd:COG4618 485 DPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRPS-LLAAVDKLLVLRDGRVQAFGPRDEVLA-RLAR 559
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-193 |
1.60e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 98.51 E-value: 1.60e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKY-GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRaRLGI 80
Cdd:TIGR02857 320 SSLEFSGVSVAYpGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW-RDQI 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKlSVEDNIW------AIIENRNTLSTTEKRDLLESLlgDLGLQEKRKQPAYTLSGGERRRTEIARSLAI 154
Cdd:TIGR02857 399 AWVPQHPFLFAG-TIAENIRlarpdaSDAEIREALERAGLDEFVAAL--PQGLDTPIGEGGAGLSGGQAQRLALARAFLR 475
|
170 180 190
....*....|....*....|....*....|....*....
gi 609248018 155 DPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILIT 193
Cdd:TIGR02857 476 DAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT 514
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1-201 |
1.62e-23 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 93.38 E-value: 1.62e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKK------YGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNG--GDILLNDHvitnlPM 72
Cdd:cd03213 1 GVTLSFRNLTVTvksspsKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvsGEVLINGR-----PL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 73 YRRA-RLGISYLPQEASVFRKLSVEDNIWAIIENRNtlsttekrdllesllgdlglqekrkqpaytLSGGERRRTEIARS 151
Cdd:cd03213 76 DKRSfRKIIGYVPQDDILHPTLTVRETLMFAAKLRG------------------------------LSGGERKRVSIALE 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 609248018 152 LAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTL 201
Cdd:cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEI 175
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
3-221 |
1.85e-23 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 94.70 E-value: 1.85e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVI-----TNLPMYRRAR 77
Cdd:PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsktPSDKAIRELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 LGISYLPQEASVFRKLSVEDNIwaiIE---NRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAI 154
Cdd:PRK11124 82 RNVGMVFQQYNLWPHLTVQQNL---IEapcRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 155 DPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDK 221
Cdd:PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
8-215 |
2.18e-23 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 93.63 E-value: 2.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 8 NLQKKYGKKQV-LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNL-----PMYRRaRLGIS 81
Cdd:cd03292 5 NVTKTYPNGTAaLDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLrgraiPYLRR-KIGVV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YlpQEASVFRKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:cd03292 84 F--QDFRLLPDRNVYENV-AFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQI 215
Cdd:cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
14-228 |
5.85e-23 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 93.06 E-value: 5.85e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 14 GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYrRARLGISYLPQEASVFRKl 93
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK-SLRSMIGVVLQDTFLFSG- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 94 SVEDNiwaIIENRNTLSTTEKRDLLESLLGDL-------GLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFA 166
Cdd:cd03254 92 TIMEN---IRLGRPNATDEEVIEAAKEAGAHDfimklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATS 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 167 GIDPIAVHEIKNIIRILVDKNIGILITDHnvrdtLEITRRSYII---KDGQIVAEGDKAELLKNR 228
Cdd:cd03254 169 NIDTETEKLIQEALEKLMKGRTSIIIAHR-----LSTIKNADKIlvlDDGKIIEEGTHDELLAKK 228
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
4-195 |
6.10e-23 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 92.04 E-value: 6.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLND-HVITNLPMYRRarlGISY 82
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGtPLAEQRDEPHE---NILY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNI--WAiienrnTLSTTEKRDLLESlLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:TIGR01189 78 LGHLPGLKPELSALENLhfWA------AIHGGAQRTIEDA-LAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWI 150
|
170 180 190
....*....|....*....|....*....|....*
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDH 195
Cdd:TIGR01189 151 LDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
18-219 |
8.30e-23 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 92.27 E-value: 8.30e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 18 VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMyRRARLGISYLPQEASVFrKLSVED 97
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNIGYVPQDVTLF-YGTLRD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 98 NiwaiIENRNTLSTTEkrDLLESL----LGDLglqeKRKQPA----------YTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03245 97 N----ITLGAPLADDE--RILRAAelagVTDF----VNKHPNgldlqigergRGLSGGQRQAVALARALLNDPPILLLDE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 164 PFAGIDPIA-VHEIKNIIRILVDKNIgILITdHNVRdTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03245 167 PTSAMDMNSeERLKERLRQLLGDKTL-IIIT-HRPS-LLDLVDRIIVMDSGRIVADG 220
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
4-232 |
1.05e-22 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 94.37 E-value: 1.05e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKK----QVLRGIDFSMHKGEVVGLLGPNGAGKTT---CfysIVGFIKPNGGDILLNDHVITNLPMY--R 74
Cdd:COG1135 2 IELENLSKTFPTKggpvTALDDVSLTIEKGEIFGIIGYSGAGKSTlirC---INLLERPTSGSVLVDGVDLTALSERelR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 75 RARLGISYLPQEASVFRKLSVEDNIwAI---IENrntLSTTEKRDLLESLLGDLGLQEKRKQ-PAyTLSGGERRRTEIAR 150
Cdd:COG1135 79 AARRKIGMIFQHFNLLSSRTVAENV-ALpleIAG---VPKAEIRKRVAELLELVGLSDKADAyPS-QLSGGQKQRVGIAR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 151 SLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHN---VRdtlEITRRSYIIKDGQIVAEGDKAELL- 225
Cdd:COG1135 154 ALANNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEmdvVR---RICDRVAVLENGRIVEQGPVLDVFa 230
|
....*....
gi 609248018 226 --KNRLARE 232
Cdd:COG1135 231 npQSELTRR 239
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
6-235 |
2.52e-22 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 95.47 E-value: 2.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 6 VSNLQK---KYGKKQVLRgIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVI-TNLPMYRRArLGIS 81
Cdd:TIGR01257 931 VKNLVKifePSGRPAVDR-LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIeTNLDAVRQS-LGMC 1008
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 ylPQEASVFRKLSVEDNI--WAIIENRntlSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:TIGR01257 1009 --PQHNILFHHLTVAEHIlfYAQLKGR---SWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 160 LLDEPFAGIDPiavHEIKNIIRILVDKNIG--ILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAeLLKNRLAREVYL 235
Cdd:TIGR01257 1084 VLDEPTSGVDP---YSRRSIWDLLLKYRSGrtIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPL-FLKNCFGTGFYL 1157
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
4-215 |
4.28e-22 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 93.09 E-value: 4.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRArlgISYL 83
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH---VNTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESL----LGDLGlQEKRKQpaytLSGGERRRTEIARSLAIDPHFL 159
Cdd:PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALrmvqLEEFA-QRKPHQ----LSGGQQQRVAIARAVVNKPKVL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 160 LLDEPFAGID----PIAVHEIKNIIRILvdkNIGILITDHNVRDTLEITRRSYIIKDGQI 215
Cdd:PRK09452 167 LLDESLSALDyklrKQMQNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRDGRI 223
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-207 |
5.43e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 91.25 E-value: 5.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTcFYSIVGFIKPNGGDILLNDHV-ITNLPMYRRaRLGISY 82
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKST-FLKCLNRMNELESEVRVEGRVeFFNQNIYER-RVNLNR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEAS-VFRK-----LSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGL----QEKRKQPAYTLSGGERRRTEIARSL 152
Cdd:PRK14258 86 LRRQVSmVHPKpnlfpMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLwdeiKHKIHKSALDLSGGQQQRLCIARAL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 153 AIDPHFLLLDEPFAGIDPIAVHEIKNIIRIL-VDKNIGILITDHNVRdtlEITRRS 207
Cdd:PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLrLRSELTMVIVSHNLH---QVSRLS 218
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
4-228 |
7.10e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 91.84 E-value: 7.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQ-----VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDhvITNLPMYRRARL 78
Cdd:PRK13631 22 LRVKNLYCVFDEKQenelvALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGD--IYIGDKKNNHEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 GISYLPQEASVFRKL------------------SVEDNIW----AIIENRNtlsttEKRDLLESLLGDLGLQEK--RKQP 134
Cdd:PRK13631 100 ITNPYSKKIKNFKELrrrvsmvfqfpeyqlfkdTIEKDIMfgpvALGVKKS-----EAKKLAKFYLNKMGLDDSylERSP 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 135 aYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQ 214
Cdd:PRK13631 175 -FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253
|
250
....*....|....
gi 609248018 215 IVAEGDKAELLKNR 228
Cdd:PRK13631 254 ILKTGTPYEIFTDQ 267
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
4-169 |
3.26e-21 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 87.55 E-value: 3.26e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDH-VITNLPMYRRarlGISY 82
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGpLDFQRDSIAR---GLLY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNI--WAIIENRNTlsttekrdlLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:cd03231 78 LGHAPGIKTTLSVLENLrfWHADHSDEQ---------VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWI 148
|
....*....
gi 609248018 161 LDEPFAGID 169
Cdd:cd03231 149 LDEPTTALD 157
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
11-195 |
3.90e-21 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 91.65 E-value: 3.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 11 KKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTcFYSIVGFIKPNG----GDILLNDHVITNLPMYRRArlgiSYLPQE 86
Cdd:TIGR00955 33 RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTT-LMNALAFRSPKGvkgsGSVLLNGMPIDAKEMRAIS----AYVQQD 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 87 ASVFRKLSVED--NIWAIIENRNTLSTTEKRDLLESLLGDLGLQEKRK----QPAYT--LSGGERRRTEIARSLAIDPHF 158
Cdd:TIGR00955 108 DLFIPTLTVREhlMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANtrigVPGRVkgLSGGERKRLAFASELLTDPPL 187
|
170 180 190
....*....|....*....|....*....|....*..
gi 609248018 159 LLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDH 195
Cdd:TIGR00955 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-218 |
3.98e-21 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 88.98 E-value: 3.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKY---------GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP 71
Cdd:PRK10419 1 MTLLNVSGLSHHYahgglsgkhQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 72 MYRRA--RLGISYLPQEA--SVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEK--RKQPAyTLSGGERRR 145
Cdd:PRK10419 81 RAQRKafRRDIQMVFQDSisAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSvlDKRPP-QLSGGQLQR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 146 TEIARSLAIDPHFLLLDEPFAGIDpiaVHEIKNIIRILVD----KNIGILITDHNVRDTLEITRRSYIIKDGQIVAE 218
Cdd:PRK10419 160 VCLARALAVEPKLLILDEAVSNLD---LVLQAGVIRLLKKlqqqFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
15-226 |
4.21e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 89.07 E-value: 4.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 15 KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR-----RARLGISYLPQEASV 89
Cdd:PRK13646 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKyirpvRKRIGMVFQFPESQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 90 FRKlSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEK-RKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGI 168
Cdd:PRK13646 99 FED-TVEREIIFGPKNFK-MNLDEVKNYAHRLLMDLGFSRDvMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 169 DPIAVHEIKNIIR-ILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:PRK13646 177 DPQSKRQVMRLLKsLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
17-226 |
4.71e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 89.02 E-value: 4.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 17 QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR-----RARLGISYLPQEASVFR 91
Cdd:PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKeikpvRKKVGVVFQFPESQLFE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 92 KLSVEDniWAIIENRNTLSTTEKRDLLESLLGDLGLQEK--RKQPaYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGID 169
Cdd:PRK13643 100 ETVLKD--VAFGPQNFGIPKEKAEKIAAEKLEMVGLADEfwEKSP-FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 170 PIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:PRK13643 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
18-234 |
4.73e-21 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 88.73 E-value: 4.73e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 18 VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFI----KPNG----GDILLNDHVITNLPMYRRARLGiSYLPQEASV 89
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLtgggAPRGarvtGDVTLNGEPLAAIDAPRLARLR-AVLPQAAQP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 90 FRKLSVEDniwaII-------ENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLA--------- 153
Cdd:PRK13547 95 AFAFSARE----IVllgryphARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAqlwpphdaa 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILV-DKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLARE 232
Cdd:PRK13547 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLArDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIAR 250
|
..
gi 609248018 233 VY 234
Cdd:PRK13547 251 CY 252
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
2-229 |
4.90e-21 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 88.53 E-value: 4.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFI---KPNGGDILLNDHVITNLPMY----R 74
Cdd:PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdKSAGSHIELLGRTVQREGRLardiR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 75 RARLGISYLPQEASVFRKLSVEDNI----------WaiienRNTL---STTEKRDLLESLLgDLGLQEKRKQPAYTLSGG 141
Cdd:PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVligalgstpfW-----RTCFswfTREQKQRALQALT-RVGMVHFAHQRVSTLSGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 142 ERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIR-ILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGD 220
Cdd:PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRdINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
....*....
gi 609248018 221 KAELLKNRL 229
Cdd:PRK09984 237 SQQFDNERF 245
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
4-215 |
5.71e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 86.12 E-value: 5.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYG--KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLnDHVITNL--PMYRRARLG 79
Cdd:cd03246 1 LEVENVSFRYPgaEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRL-DGADISQwdPNELGDHVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 isYLPQEASVFrKLSVEDNIwaiienrntlsttekrdllesllgdlglqekrkqpaytLSGGERRRTEIARSLAIDPHFL 159
Cdd:cd03246 80 --YLPQDDELF-SGSIAENI--------------------------------------LSGGQRQRLGLARALYGNPRIL 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRIL-VDKNIGILITdHNVRdTLEITRRSYIIKDGQI 215
Cdd:cd03246 119 VLDEPNSHLDVEGERALNQAIAALkAAGATRIVIA-HRPE-TLASADRILVLEDGRV 173
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-227 |
8.25e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 87.66 E-value: 8.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIK--PNG---GDILLNDHVITNLP---M 72
Cdd:PRK14247 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEArvsGEVYLDGQDIFKMDvieL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 73 YRRARLgISYLPQ---EASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDlGLQEKRKQPAYTLSGGERRRTEIA 149
Cdd:PRK14247 81 RRRVQM-VFQIPNpipNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWD-EVKDRLDAPAGKLSGGQQQRLCIA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 150 RSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIrILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLF-LELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
16-225 |
1.51e-20 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 86.52 E-value: 1.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 16 KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITN--LPMYRRArlgISYLPQEASVFrkl 93
Cdd:cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvtLDSLRRA---IGVVPQDTVLF--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 94 svEDNIWAIIENRNTLSTTEK-----------------RDLLESLLGDLGLQekrkqpaytLSGGERRRTEIARSLAIDP 156
Cdd:cd03253 88 --NDTIGYNIRYGRPDATDEEvieaakaaqihdkimrfPDGYDTIVGERGLK---------LSGGEKQRVAIARAILKNP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 157 HFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITdHNVRdtlEITRRSYII--KDGQIVAEGDKAELL 225
Cdd:cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIA-HRLS---TIVNADKIIvlKDGRIVERGTHEELL 223
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
2-226 |
1.64e-20 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 89.80 E-value: 1.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKYG-KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLgI 80
Cdd:TIGR01193 472 GDIVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF-I 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVF-------------RKLSvEDNIWAIIEnrntlsTTEKRDLLESLlgDLGLQEKRKQPAYTLSGGERRRTE 147
Cdd:TIGR01193 551 NYLPQEPYIFsgsilenlllgakENVS-QDEIWAACE------IAEIKDDIENM--PLGYQTELSEEGSSISGGQKQRIA 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 148 IARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIgILITDHnvrdtLEITRRSY---IIKDGQIVAEGDKAEL 224
Cdd:TIGR01193 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTI-IFVAHR-----LSVAKQSDkiiVLDHGKIIEQGSHDEL 695
|
..
gi 609248018 225 LK 226
Cdd:TIGR01193 696 LD 697
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
4-228 |
1.69e-20 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 89.88 E-value: 1.69e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY--GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHvitNLPMYRRARL--G 79
Cdd:PRK11160 339 LTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ---PIADYSEAALrqA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFRKlSVEDNIWAIIEN------RNTLSTTEKRDLLESL------LGDLGLQekrkqpaytLSGGERRRTE 147
Cdd:PRK11160 416 ISVVSQRVHLFSA-TLRDNLLLAAPNasdealIEVLQQVGLEKLLEDDkglnawLGEGGRQ---------LSGGEQRRLG 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 148 IARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIR-ILVDKNIgILITdHNVRdTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAeHAQNKTV-LMIT-HRLT-GLEQFDRICVMDNGQIIEQGTHQELLA 562
|
..
gi 609248018 227 NR 228
Cdd:PRK11160 563 QQ 564
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
29-241 |
1.83e-20 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 86.91 E-value: 1.83e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 29 GEVVGLLGPNGAGKTTCFYSIVGFIkPNGGDILLNDhviTNLPMYRRARLGI--SYLPQEAS------VFR--KLSVEDN 98
Cdd:PRK03695 22 GEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAG---QPLEAWSAAELARhrAYLSQQQTppfampVFQylTLHQPDK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 99 iwaiienrntLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSL-----AIDPH--FLLLDEPFAGIDPI 171
Cdd:PRK03695 98 ----------TRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVlqvwpDINPAgqLLLLDEPMNSLDVA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 172 AVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLknrlaREVYLGESFEA 241
Cdd:PRK03695 168 QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL-----TPENLAQVFGV 232
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
4-226 |
2.01e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 87.38 E-value: 2.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY--GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR-RARLGI 80
Cdd:PRK13635 6 IRVEHISFRYpdAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDvRRQVGM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 sylpqeasVFRK-------LSVEDNIWAIIENrNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLA 153
Cdd:PRK13635 86 --------VFQNpdnqfvgATVQDDVAFGLEN-IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILVD-KNIGILITDHNVRDTLEiTRRSYIIKDGQIVAEGDKAELLK 226
Cdd:PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEqKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
17-181 |
2.01e-20 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 86.37 E-value: 2.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 17 QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVItnlPMYRRARL--GISYLPQEASVFRKlS 94
Cdd:cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI---SQYEHKYLhsKVSLVGQEPVLFAR-S 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 95 VEDNIWAIIENRNTLSTTE------KRDLLESLlgDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGI 168
Cdd:cd03248 104 LQDNIAYGLQSCSFECVKEaaqkahAHSFISEL--ASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSAL 181
|
170
....*....|...
gi 609248018 169 DPIAVHEIKNIIR 181
Cdd:cd03248 182 DAESEQQVQQALY 194
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
4-208 |
2.28e-20 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 86.08 E-value: 2.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY-GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNL-----PMYRRAr 77
Cdd:PRK10908 2 IRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLknrevPFLRRQ- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 lgISYLPQEASVFRKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPH 157
Cdd:PRK10908 81 --IGMIFQDHHLLMDRTVYDNV-AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 609248018 158 FLLLDEPFAGIDPiAVHEikNIIRILVDKN---IGILITDHnvrDTLEITRRSY 208
Cdd:PRK10908 158 VLLADEPTGNLDD-ALSE--GILRLFEEFNrvgVTVLMATH---DIGLISRRSY 205
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
4-227 |
2.30e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 86.75 E-value: 2.30e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSI--VGFIKPN---GGDILLNDHVI----TNLPMYR 74
Cdd:PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDLNPEvtiTGSIVYNGHNIysprTDTVDLR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 75 RArlgISYLPQEASVFrKLSVEDNI-----WAIIENRNTLSTTEKRDLLESLLGDlGLQEKRKQPAYTLSGGERRRTEIA 149
Cdd:PRK14239 86 KE---IGMVFQQPNPF-PMSIYENVvyglrLKGIKDKQVLDEAVEKSLKGASIWD-EVKDRLHDSALGLSGGQQQRVCIA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 150 RSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITdHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT-RSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-225 |
2.61e-20 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 89.09 E-value: 2.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY-----GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGD--ILLNDHVI--TNL-PMY 73
Cdd:TIGR03269 280 IKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEvnVRVGDEWVdmTKPgPDG 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 74 R-RARLGISYLPQEASVFRKLSVEDNIW-AI-IENRNTLSTTEKRDLLESLlgdlGLQEKRKQ---PAY--TLSGGERRR 145
Cdd:TIGR03269 360 RgRAKRYIGILHQEYDLYPHRTVLDNLTeAIgLELPDELARMKAVITLKMV----GFDEEKAEeilDKYpdELSEGERHR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 146 TEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKN-IIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHsILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
|
.
gi 609248018 225 L 225
Cdd:TIGR03269 516 V 516
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
4-164 |
3.20e-20 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 87.48 E-value: 3.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY--------GKKQVLR---GIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP- 71
Cdd:COG4608 8 LEVRDLKKHFpvrgglfgRTVGVVKavdGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSg 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 72 --MyRRARLGISYLPQE--ASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEK--RKQPaYTLSGGERRR 145
Cdd:COG4608 88 reL-RPLRRRMQMVFQDpyASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLRPEhaDRYP-HEFSGGQRQR 165
|
170
....*....|....*....
gi 609248018 146 TEIARSLAIDPHFLLLDEP 164
Cdd:COG4608 166 IGIARALALNPKLIVCDEP 184
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
19-219 |
3.84e-20 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 86.48 E-value: 3.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIllndhVITNLPMYRRARLG-ISYLPQEASV---FRKLs 94
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI-----SILGQPTRQALQKNlVAYVPQSEEVdwsFPVL- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 95 VEDniwAIIENRN------TLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGI 168
Cdd:PRK15056 97 VED---VVMMGRYghmgwlRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 609248018 169 DPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKdGQIVAEG 219
Cdd:PRK15056 174 DVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASG 223
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
9-227 |
7.38e-20 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 85.39 E-value: 7.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 9 LQKKYGKKQVL---------RGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP-----MYR 74
Cdd:cd03294 21 LAKGKSKEEILkktgqtvgvNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSrkelrELR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 75 RARLGISYlpQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESL-LGDLGLQEKRKQPAytLSGGERRRTEIARSLA 153
Cdd:cd03294 101 RKKISMVF--QSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALeLVGLEGWEHKYPDE--LSGGMQQRVGLARALA 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAElQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-236 |
9.02e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 85.10 E-value: 9.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFI-------KPNGGDILLNDHVITNLPMYRRA 76
Cdd:PRK14246 11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIeiydskiKVDGKVLYFGKDIFQIDAIKLRK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 77 RLGISYlpQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGL----QEKRKQPAYTLSGGERRRTEIARSL 152
Cdd:PRK14246 91 EVGMVF--QQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLwkevYDRLNSPASQLSGGQQQRLTIARAL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 153 AIDPHFLLLDEPFAGIDPIAVHEIKNIIRILvDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELL---KNRL 229
Cdd:PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFtspKNEL 247
|
....*..
gi 609248018 230 AREVYLG 236
Cdd:PRK14246 248 TEKYVIG 254
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-215 |
1.06e-19 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 84.73 E-value: 1.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNdhvitNLPMyRRARLGISYL 83
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG-----TAPL-AEAREDTRLM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNI-------WaiienrntlsttekRDLLESLLGDLGLQEKRKQ-PAyTLSGGERRRTEIARSLAID 155
Cdd:PRK11247 87 FQDARLLPWKKVIDNVglglkgqW--------------RDAALQALAAVGLADRANEwPA-ALSGGQKQRVALARALIHR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 156 PHFLLLDEPFAGIDPIAVHEIKNII-RILVDKNIGILITDHNVRDTLEITRRSYIIKDGQI 215
Cdd:PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIeSLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
4-226 |
1.13e-19 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 84.69 E-value: 1.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGF--IKPNGGDILLNDHVITNLPMYRRARLGIS 81
Cdd:CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHpaYKILEGDILFKGESILDLEPEERAHLGIF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESL------LGDLGLQEK--RKQPAYTLSGGERRRTEIARSLA 153
Cdd:CHL00131 88 LAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLeiinekLKLVGMDPSflSRNVNEGFSGGEKKRNEILQMAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRdTLEITRRSY--IIKDGQIVAEGDkAELLK 226
Cdd:CHL00131 168 LDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYvhVMQNGKIIKTGD-AELAK 240
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
19-227 |
1.67e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 84.65 E-value: 1.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIL---LNDHVITNLPMYRRArLGISYLPQEASvFRKLSV 95
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLvsgIDTGDFSKLQGIRKL-VGIVFQNPETQ-FVGRTV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 96 EDNIWAIIENRnTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHE 175
Cdd:PRK13644 96 EEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 609248018 176 IKNIIRILVDKNIGILITDHNVRDtLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK13644 175 VLERIKKLHEKGKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSD 225
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
4-225 |
2.09e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 84.37 E-value: 2.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKK---QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR-RARLG 79
Cdd:PRK13642 5 LEVENLVFKYEKEsdvNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNlRRKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASvFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAyTLSGGERRRTEIARSLAIDPHFL 159
Cdd:PRK13642 85 MVFQNPDNQ-FVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPA-RLSGGQKQRVAVAGIIALRPEII 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVrDTLEITRRSYIIKDGQIVAEGDKAELL 225
Cdd:PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEKyQLTVLSITHDL-DEAASSDRILVMKAGEIIKEAAPSELF 228
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
4-214 |
2.46e-19 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 80.96 E-value: 2.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDhvitnlpmyrraRLGISYL 83
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS------------TVKIGYF 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQeasvfrklsvedniwaiienrntlsttekrdllesllgdlglqekrkqpaytLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03221 69 EQ----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDE 96
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 609248018 164 PFAGIDPIAvheIKNIIRILVDKNIGILITDHNvRDTL-EITRRSYIIKDGQ 214
Cdd:cd03221 97 PTNHLDLES---IEALEEALKEYPGTVILVSHD-RYFLdQVATKIIELEDGK 144
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
4-238 |
4.38e-19 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 84.77 E-value: 4.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRarlGISYL 83
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR---DICMV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESL-LGDLGLQEKRkqpaYT--LSGGERRRTEIARSLAIDPHFLL 160
Cdd:PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALeLVDLAGFEDR----YVdqISGGQQQRVALARALILKPKVLL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLK--NRLAREVYLGE 237
Cdd:PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQfNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRqpASRFMASFMGD 239
|
.
gi 609248018 238 S 238
Cdd:PRK11432 240 A 240
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
5-195 |
5.62e-19 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 85.32 E-value: 5.62e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNG--GDILLNDHVITNLPMYRrarlgISY 82
Cdd:PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTKQILKR-----TGF 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNI--WAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYT-----LSGGERRRTEIARSLAID 155
Cdd:PLN03211 145 VTQDDILYPHLTVRETLvfCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNsfirgISGGERKRVSIAHEMLIN 224
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 609248018 156 PHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDH 195
Cdd:PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
17-228 |
5.68e-19 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 82.59 E-value: 5.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 17 QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT--NLPMYRRArlgISYLPQEASVFrKLS 94
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRdlNLRWLRSQ---IGLVSQEPVLF-DGT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 95 VEDNIwAIIENRNTLSTTEKR--------------DLLESLLGDLGLQekrkqpaytLSGGERRRTEIARSLAIDPHFLL 160
Cdd:cd03249 93 IAENI-RYGKPDATDEEVEEAakkanihdfimslpDGYDTLVGERGSQ---------LSGGQKQRIAIARALLRNPKILL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVdKNIGILITDHN---VRDTLEItrrsYIIKDGQIVAEGDKAELLKNR 228
Cdd:cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRlstIRNADLI----AVLQNGQVVEQGTHDELMAQK 228
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
25-223 |
1.11e-18 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 82.07 E-value: 1.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 25 SMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLndhvitnlpmyrrARLGISYLPQEASVFRKLSVEDNIWAIIE 104
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-------------ELDTVSYKPQYIKADYEGTVRDLLSSITK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 105 NRNTLS--TTEkrdllesLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGID-PIAVHEIKNIIR 181
Cdd:cd03237 88 DFYTHPyfKTE-------IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDvEQRLMASKVIRR 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 609248018 182 ILVDKNIGILITDHnvrDTLEITrrsyIIKDGQIVAEGDKAE 223
Cdd:cd03237 161 FAENNEKTAFVVEH---DIIMID----YLADRLIVFEGEPSV 195
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
4-229 |
1.15e-18 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 84.28 E-value: 1.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIL-LNDHVITNLPMYRRARlGISY 82
Cdd:PRK10762 5 LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILyLGKEVTFNGPKSSQEA-GIGI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNIWAIIENRNTLSTTEKRDLLES---LLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEadkLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVI 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 160 LLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRL 229
Cdd:PRK10762 164 IMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSL 233
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
4-198 |
1.17e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 82.14 E-value: 1.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTT---CFYSIVGFIkpNG----GDILLNDHVITNL---PMY 73
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTilrCFNRLNDLI--PGfrveGKVTFHGKNLYAPdvdPVE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 74 RRARLGISYlpQEASVFRKlSVEDNIW---AIIENRNTLSTTEKRDLLESLLGDlGLQEKRKQPAYTLSGGERRRTEIAR 150
Cdd:PRK14243 89 VRRRIGMVF--QKPNPFPK-SIYDNIAygaRINGYKGDMDELVERSLRQAALWD-EVKDKLKQSGLSLSGGQQQRLCIAR 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 609248018 151 SLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIgILITDHNVR 198
Cdd:PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT-IIIVTHNMQ 211
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-197 |
1.19e-18 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 82.08 E-value: 1.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTL-QVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILlndhvitnlpmyRRARLG 79
Cdd:PRK09544 1 MTSLvSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK------------RNGKLR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQeasvfrKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:PRK09544 69 IGYVPQ------KLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLL 142
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 609248018 160 LLDEPFAGID---PIAVHEIKNIIRilVDKNIGILITDHNV 197
Cdd:PRK09544 143 VLDEPTQGVDvngQVALYDLIDQLR--RELDCAVLMVSHDL 181
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-170 |
1.68e-18 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 80.94 E-value: 1.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MST-LQVSNLQKKY------GKK-QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLN--------- 63
Cdd:COG4778 1 MTTlLEVENLSKTFtlhlqgGKRlPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdggwvdla 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 64 ---DHVITNLpmyRRARLGisYLPQEASVFRKLSVEDniwAIIEN--RNTLSTTEKRDLLESLLGDLGLQEKRKQ--PAy 136
Cdd:COG4778 81 qasPREILAL---RRRTIG--YVSQFLRVIPRVSALD---VVAEPllERGVDREEARARARELLARLNLPERLWDlpPA- 151
|
170 180 190
....*....|....*....|....*....|....
gi 609248018 137 TLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDP 170
Cdd:COG4778 152 TFSGGEQQRVNIARGFIADPPLLLLDEPTASLDA 185
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
4-229 |
1.78e-18 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 83.72 E-value: 1.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGfIKPNG---GDILLNDHVITNLPMYRRARLGI 80
Cdd:TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGtwdGEIYWSGSPLKASNIRDTERAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNIW---AIIENRNTLSTTEKRDLLESLLGDLGLQE-KRKQPAYTLSGGERRRTEIARSLAIDP 156
Cdd:TIGR02633 81 VIIHQELTLVPELSVAENIFlgnEITLPGGRMAYNAMYLRAKNLLRELQLDAdNVTRPVGDYGGGQQQLVEIAKALNKQA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 157 HFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRL 229
Cdd:TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDI 233
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
4-225 |
3.34e-18 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 83.23 E-value: 3.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYG--KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMyRRARLGIS 81
Cdd:TIGR02203 331 VEFRNVTFRYPgrDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL-ASLRRQVA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKlSVEDNI-------WAIIENRNTLSTTEKRDLLESLlgDLGLQEKRKQPAYTLSGGERRRTEIARSLAI 154
Cdd:TIGR02203 410 LVSQDVVLFND-TIANNIaygrteqADRAEIERALAAAYAQDFVDKL--PLGLDTPIGENGVLLSGGQRQRLAIARALLK 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 155 DPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITdHNVrDTLEITRRSYIIKDGQIVAEGDKAELL 225
Cdd:TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA-HRL-STIEKADRIVVMDDGRIVERGTHNELL 555
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
15-228 |
4.17e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 81.03 E-value: 4.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 15 KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT------NLPMYRRaRLGISYLPQEAS 88
Cdd:PRK13641 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgnkNLKKLRK-KVSLVFQFPEAQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 89 VFRKLSVEDNIWAiieNRN-TLSTTEKRDLLESLLGDLGLQEK--RKQPaYTLSGGERRRTEIARSLAIDPHFLLLDEPF 165
Cdd:PRK13641 98 LFENTVLKDVEFG---PKNfGFSEDEAKEKALKWLKKVGLSEDliSKSP-FELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 166 AGIDPIAVHEiknIIRILVD-KNIG---ILITdHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNR 228
Cdd:PRK13641 174 AGLDPEGRKE---MMQLFKDyQKAGhtvILVT-HNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
4-181 |
4.63e-18 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 79.46 E-value: 4.63e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNL-PMYRRARLgisY 82
Cdd:PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQrDEYHQDLL---Y 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNI-WAIienrnTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:PRK13538 79 LGHQPGIKTELTALENLrFYQ-----RLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL 153
|
170 180
....*....|....*....|
gi 609248018 162 DEPFAGIDPIAVHEIKNIIR 181
Cdd:PRK13538 154 DEPFTAIDKQGVARLEALLA 173
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
4-210 |
5.10e-18 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 79.76 E-value: 5.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP--MYRRArlgIS 81
Cdd:PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKpeIYRQQ---VS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKlSVEDNI---WAIienRNtlsTTEKRDLLESLLGDLGL-QEKRKQPAYTLSGGERRRTEIARSLAIDPH 157
Cdd:PRK10247 85 YCAQTPTLFGD-TVYDNLifpWQI---RN---QQPDPAIFLDDLERFALpDTILTKNIAELSGGEKQRISLIRNLQFMPK 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 158 FLLLDEPFAGIDP---IAVHEIknIIRILVDKNIGILITDHnvrDTLEITRRSYII 210
Cdd:PRK10247 158 VLLLDEITSALDEsnkHNVNEI--IHRYVREQNIAVLWVTH---DKDEINHADKVI 208
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
10-219 |
5.14e-18 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 79.50 E-value: 5.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 10 QKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLpmyrraRLGISYLPQeasv 89
Cdd:cd03220 29 KGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL------GLGGGFNPE---- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 90 frkLSVEDNIW--AIIENrntLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAG 167
Cdd:cd03220 99 ---LTGRENIYlnGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 609248018 168 IDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-229 |
5.60e-18 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 82.38 E-value: 5.60e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQ-KKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISY 82
Cdd:COG3845 258 LEVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGVAY 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQE----ASVfRKLSVEDNI------WAIIENRNTLSTTEKRDLLESLLGDLGLQ-EKRKQPAYTLSGGERRRTEIARS 151
Cdd:COG3845 338 IPEDrlgrGLV-PDMSVAENLilgryrRPPFSRGGFLDRKAIRAFAEELIEEFDVRtPGPDTPARSLSGGNQQKVILARE 416
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 152 LAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRL 229
Cdd:COG3845 417 LSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAEATREEI 494
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-224 |
6.26e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 82.16 E-value: 6.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGF--IKPNGGDILLN------------------ 63
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYHvalcekcgyverpskvge 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 64 --------------DHVITNLPMYRRARLGISYLPQEA-SVFRKLSVEDNIwaiIENRNTLSTTEKRDLLES--LLGDLG 126
Cdd:TIGR03269 81 pcpvcggtlepeevDFWNLSDKLRRRIRKRIAIMLQRTfALYGDDTVLDNV---LEALEEIGYEGKEAVGRAvdLIEMVQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 127 LQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILV-DKNIGILITDHNVRDTLEITR 205
Cdd:TIGR03269 158 LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVkASGISMVLTSHWPEVIEDLSD 237
|
250
....*....|....*....
gi 609248018 206 RSYIIKDGQIVAEGDKAEL 224
Cdd:TIGR03269 238 KAIWLENGEIKEEGTPDEV 256
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
15-227 |
7.09e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 80.23 E-value: 7.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 15 KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGD--------ILLNDHVITNLpmyrRARLGISYLPQE 86
Cdd:PRK13640 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskitvdgITLTAKTVWDI----REKVGIVFQNPD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 87 ASvFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEKRK-QPAYtLSGGERRRTEIARSLAIDPHFLLLDEPF 165
Cdd:PRK13640 95 NQ-FVGATVGDDVAFGLENRA-VPRPEMIKIVRDVLADVGMLDYIDsEPAN-LSGGQKQRVAIAGILAVEPKIIILDEST 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 166 AGIDPIAVHEIKNIIR-ILVDKNIGILITDHNVrDTLEITRRSYIIKDGQIVAEG------DKAELLKN 227
Cdd:PRK13640 172 SMLDPAGKEQILKLIRkLKKKNNLTVISITHDI-DEANMADQVLVLDDGKLLAQGspveifSKVEMLKE 239
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
5-232 |
7.32e-18 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 81.00 E-value: 7.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKY--GKKQV--LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNL--PMYRRARL 78
Cdd:PRK11153 3 ELKNISKVFpqGGRTIhaLNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALseKELRKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 GISYLPQEasvFRKLS---VEDNIWAIIEnrntLSTTEKRDL---LESLLGDLGLQEKRKQ-PAyTLSGGERRRTEIARS 151
Cdd:PRK11153 83 QIGMIFQH---FNLLSsrtVFDNVALPLE----LAGTPKAEIkarVTELLELVGLSDKADRyPA-QLSGGQKQRVAIARA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 152 LAIDPHFLLLDEPFAGIDPIAVHEI----KNIIRILvdkNIGILITDHN---VRdtlEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:PRK11153 155 LASNPKVLLCDEATSALDPATTRSIlellKDINREL---GLTIVLITHEmdvVK---RICDRVAVIDAGRLVEQGTVSEV 228
|
250
....*....|.
gi 609248018 225 L---KNRLARE 232
Cdd:PRK11153 229 FshpKHPLTRE 239
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
19-228 |
1.03e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 80.06 E-value: 1.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT------NLPMYRRaRLGISYLPQEASVFRK 92
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknkKLKPLRK-KVGIVFQFPEHQLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 93 lSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEK--RKQPaYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDP 170
Cdd:PRK13634 102 -TVEKDICFGPMNFG-VSEEDAKQKAREMIELVGLPEEllARSP-FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 171 IAVHEIKNII-RILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNR 228
Cdd:PRK13634 179 KGRKEMMEMFyKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
4-218 |
1.48e-17 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 78.70 E-value: 1.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY--GKKQ--VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP-----MYR 74
Cdd:PRK11629 6 LQCDNLCKRYqeGSVQtdVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSsaakaELR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 75 RARLGISYlpQEASVFRKLSVEDNIWA--IIENRNTLSTTEKRdllESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSL 152
Cdd:PRK11629 86 NQKLGFIY--QFHHLLPDFTALENVAMplLIGKKKPAEINSRA---LEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 153 AIDPHFLLLDEPFAGIDPIAVHEIKNIIRIL-VDKNIGILITDHNVRDTLEITRRSYiIKDGQIVAE 218
Cdd:PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELnRLQGTAFLVVTHDLQLAKRMSRQLE-MRDGRLTAE 226
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
7-197 |
2.29e-17 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 80.62 E-value: 2.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 7 SNLQKKYGkkqvlrgiDFSM-------HKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNdhvitnlpmyrrarLG 79
Cdd:PRK13409 344 PDLTKKLG--------DFSLeveggeiYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--------------LK 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFRKLSVEDNIWAIieNRNTLSTTEKRDLLESllgdLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSI--TDDLGSSYYKSEIIKP----LQLERLLDKNVKDLSGGELQRVAIAACLSRDADLY 475
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 609248018 160 LLDEPFAGIDpiaVHE-------IKNIIRilvDKNIGILITDHNV 197
Cdd:PRK13409 476 LLDEPSAHLD---VEQrlavakaIRRIAE---EREATALVVDHDI 514
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
7-197 |
2.69e-17 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 80.21 E-value: 2.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 7 SNLQKKYGkkqvlrgiDFS-------MHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNdhvitnlpmyrrarLG 79
Cdd:COG1245 345 PDLTKSYG--------GFSleveggeIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDED--------------LK 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFRKLSVEDNIWAIIENRNTlSTTEKRDLLESllgdLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:COG1245 403 ISYKPQYISPDYDGTVEEFLRSANTDDFG-SSYYKTEIIKP----LGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLY 477
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 609248018 160 LLDEPFAGIDpiaVHE-------IKNIIRilvDKNIGILITDHNV 197
Cdd:COG1245 478 LLDEPSAHLD---VEQrlavakaIRRFAE---NRGKTAMVVDHDI 516
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
4-164 |
3.15e-17 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 79.98 E-value: 3.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVitnlpmyrrarlGISYL 83
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETV------------KLAYV 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASvfrKLSVEDNIWAIIENRNTLSTTEKRDL-LESLLGDLGL----QEKRkqpAYTLSGGERRRTEIARSLAIDPHF 158
Cdd:TIGR03719 391 DQSRD---ALDPNKTVWEEISGGLDIIKLGKREIpSRAYVGRFNFkgsdQQKK---VGQLSGGERNRVHLAKTLKSGGNV 464
|
....*.
gi 609248018 159 LLLDEP 164
Cdd:TIGR03719 465 LLLDEP 470
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
2-234 |
5.06e-17 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 77.72 E-value: 5.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLgIS 81
Cdd:PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR-IG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDNIWAIIENRNTLST---TEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHF 158
Cdd:PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTrwrKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 159 LLLDEPFAGIDpiAVHEIkNIIRILVD----KNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRLAREVY 234
Cdd:PRK10253 165 MLLDEPTTWLD--ISHQI-DLLELLSElnreKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIY 241
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
19-226 |
5.98e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 77.48 E-value: 5.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR-RARLGISYLPQEaSVFRKLSVED 97
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKlRKHIGIVFQNPD-NQFVGSIVKY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 98 NIWAIIENrNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIK 177
Cdd:PRK13648 104 DVAFGLEN-HAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 609248018 178 NIIRIL-VDKNIGILITDHNVRDTLEitrRSYII--KDGQIVAEGDKAELLK 226
Cdd:PRK13648 183 DLVRKVkSEHNITIISITHDLSEAME---ADHVIvmNKGTVYKEGTPTEIFD 231
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
4-169 |
6.77e-17 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 76.70 E-value: 6.77e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY----GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP-----MYR 74
Cdd:COG4181 9 IELRGLTKTVgtgaGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDedaraRLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 75 RARLGIsylpqeasVFRK------LSVEDNIWAIIENRNTlstTEKRDLLESLLGDLGLQEK-RKQPAyTLSGGERRRTE 147
Cdd:COG4181 89 ARHVGF--------VFQSfqllptLTALENVMLPLELAGR---RDARARARALLERVGLGHRlDHYPA-QLSGGEQQRVA 156
|
170 180
....*....|....*....|..
gi 609248018 148 IARSLAIDPHFLLLDEPFAGID 169
Cdd:COG4181 157 LARAFATEPAILFADEPTGNLD 178
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-227 |
9.68e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 76.80 E-value: 9.68e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNG-----GDILLNDHVITNL---PM 72
Cdd:PRK14267 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEearveGEVRLFGRNIYSPdvdPI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 73 YRRARLGISYlpQEASVFRKLSVEDNIwAIIENRNTL--STTEKRDLLESLLGDLGLQEKRKQP----AYTLSGGERRRT 146
Cdd:PRK14267 82 EVRREVGMVF--QYPNPFPHLTIYDNV-AIGVKLNGLvkSKKELDERVEWALKKAALWDEVKDRlndyPSNLSGGQRQRL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 147 EIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITdHNVRDTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT-HSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237
|
.
gi 609248018 227 N 227
Cdd:PRK14267 238 N 238
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
4-229 |
1.10e-16 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 78.43 E-value: 1.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGfIKPNG---GDILLNDHVITNLPMYRRARLGI 80
Cdd:PRK13549 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGtyeGEIIFEGEELQASNIRDTERAGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNIW--------AIIENRNTLSTTEKrdllesLLGDLGLQEKRKQPAYTLSGGERRRTEIARSL 152
Cdd:PRK13549 85 AIIHQELALVKELSVLENIFlgneitpgGIMDYDAMYLRAQK------LLAQLKLDINPATPVGNLGLGQQQLVEIAKAL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 153 AIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKNRL 229
Cdd:PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDDI 235
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
12-226 |
1.14e-16 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 76.12 E-value: 1.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 12 KYGKKQ--VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITN--LPMYRRArlgISYLPQEA 87
Cdd:cd03251 9 RYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDytLASLRRQ---IGLVSQDV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 88 SVFRKlSVEDNIW---------AIIENRNTLSTTE----KRDLLESLLGDLGLQekrkqpaytLSGGERRRTEIARSLAI 154
Cdd:cd03251 86 FLFND-TVAENIAygrpgatreEVEEAARAANAHEfimeLPEGYDTVIGERGVK---------LSGGQRQRIAIARALLK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 609248018 155 DPHFLLLDEPFAGIDPIAVHEIKNIIRILVdKNIGILITDHNVrDTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:cd03251 156 DPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRL-STIENADRIVVLEDGKIVERGTHEELLA 225
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
22-223 |
1.17e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 78.41 E-value: 1.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 22 IDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT-NLPmyRRA-RLGISYLPQEasvfRK------- 92
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDiRSP--RDAiRAGIMLCPED----RKaegiipv 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 93 LSVEDNIwAIIENRNT------LSTTEKRDLLESLLGDLGLQEK-RKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPF 165
Cdd:PRK11288 346 HSVADNI-NISARRHHlragclINNRWEAENADRFIRSLNIKTPsREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPT 424
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 166 AGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAE 223
Cdd:PRK11288 425 RGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
4-198 |
1.77e-16 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 75.14 E-value: 1.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKK--QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR-RARLGI 80
Cdd:cd03369 7 IEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDlRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 syLPQEASVFRKlSVEDNIwaIIENRNTlstteKRDLLESLlgdlglqeKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:cd03369 87 --IPQDPTLFSG-TIRSNL--DPFDEYS-----DEEIYGAL--------RVSEGGLNLSQGQRQLLCLARALLKRPRVLV 148
|
170 180 190
....*....|....*....|....*....|....*...
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVdKNIGILITDHNVR 198
Cdd:cd03369 149 LDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR 185
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
18-228 |
2.40e-16 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 75.60 E-value: 2.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 18 VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNL-PMYRRARLGisYLPQEASVFRKlSVE 96
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAdPAWLRRQVG--VVLQENVLFNR-SIR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 97 DNIWA---------IIENRNTLST----TEKRDLLESLLGDLGLqekrkqpayTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03252 94 DNIALadpgmsmerVIEAAKLAGAhdfiSELPEGYDTIVGEQGA---------GLSGGQRQRIAIARALIHNPRILIFDE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 164 PFAGIDPIAVHEI-KNIIRILvdKNIGILITDHNVrDTLEITRRSYIIKDGQIVAEGDKAELLKNR 228
Cdd:cd03252 165 ATSALDYESEHAImRNMHDIC--AGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELLAEN 227
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-215 |
2.44e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 75.92 E-value: 2.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQ---VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMY-RRA 76
Cdd:PRK13650 2 SNIIEVKNLTFKYKEDQekyTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWdIRH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 77 RLGISYLPQEaSVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQE-KRKQPAyTLSGGERRRTEIARSLAID 155
Cdd:PRK13650 82 KIGMVFQNPD-NQFVGATVEDDVAFGLENKG-IPHEEMKERVNEALELVGMQDfKEREPA-RLSGGQKQRVAIAGAVAMR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 156 PHFLLLDEPFAGIDPIAVHE-IKNIIRILVDKNIGILITDHNVrDTLEITRRSYIIKDGQI 215
Cdd:PRK13650 159 PKIIILDEATSMLDPEGRLElIKTIKGIRDDYQMTVISITHDL-DEVALSDRVLVMKNGQV 218
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
11-227 |
2.63e-16 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 77.00 E-value: 2.63e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 11 KKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLND---HVITNLPMYRRARLGISYLPQEA 87
Cdd:PRK10070 36 EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGvdiAKISDAELREVRRKKIAMVFQSF 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 88 SVFRKLSVEDNIwAIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAG 167
Cdd:PRK10070 116 ALMPHMTVLDNT-AFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 168 IDPIAVHEIKN-IIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK10070 195 LDPLIRTEMQDeLVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
15-227 |
2.89e-16 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 77.45 E-value: 2.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 15 KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLN-------DHVitnlpmYRRARLGIsyLPQEA 87
Cdd:TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDgvplvqyDHH------YLHRQVAL--VGQEP 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 88 SVFRKlSVEDNIwaiienRNTLSTTEKRDLLESLLG--------------DLGLQEKRKQpaytLSGGERRRTEIARSLA 153
Cdd:TIGR00958 565 VLFSG-SVRENI------AYGLTDTPDEEIMAAAKAanahdfimefpngyDTEVGEKGSQ----LSGGQKQRIAIARALV 633
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 154 IDPHFLLLDEPFAGIDpIAVHEIKNIIRILVDKNIgILITD--HNVRDTLEItrrsYIIKDGQIVAEGDKAELLKN 227
Cdd:TIGR00958 634 RKPRVLILDEATSALD-AECEQLLQESRSRASRTV-LLIAHrlSTVERADQI----LVLKKGSVVEMGTHKQLMED 703
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
2-234 |
3.09e-16 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 75.59 E-value: 3.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARlGIS 81
Cdd:PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR-KVA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDNI------WAIIENRntlSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAID 155
Cdd:PRK10575 89 YLPQQLPAAEGMTVRELVaigrypWHGALGR---FGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 156 PHFLLLDEPFAGIDpIAvHEIK--------------NIIRILVDKNIGILITDHNVrdtleitrrsyIIKDGQIVAEGDK 221
Cdd:PRK10575 166 SRCLLLDEPTSALD-IA-HQVDvlalvhrlsqerglTVIAVLHDINMAARYCDYLV-----------ALRGGEMIAQGTP 232
|
250
....*....|...
gi 609248018 222 AELLKNRLAREVY 234
Cdd:PRK10575 233 AELMRGETLEQIY 245
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
5-218 |
4.61e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 76.75 E-value: 4.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKYGKKqvLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYLP 84
Cdd:PRK09700 267 EVRNVTSRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYIT 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 85 Q---EASVFRKLSVEDNI--------------WAIIENRNTLSTTEK-RDLLESLLGDLglqekrKQPAYTLSGGERRRT 146
Cdd:PRK09700 345 EsrrDNGFFPNFSIAQNMaisrslkdggykgaMGLFHEVDEQRTAENqRELLALKCHSV------NQNITELSGGNQQKV 418
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 609248018 147 EIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAE 218
Cdd:PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
2-224 |
5.21e-16 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 75.93 E-value: 5.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTcfysivGFIKPN--GGDILLNDHVITNLPMYRRA--R 77
Cdd:NF000106 12 NAVEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**R------GALPAHv*GPDAGRRPWRF*TWCANRRAlrR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 LGISYLPQEASVFRKLSVEDNIWAIIENRNtLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPH 157
Cdd:NF000106 86 TIG*HRPVR*GRRESFSGRENLYMIGR*LD-LSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 158 FLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:NF000106 165 VLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-169 |
7.42e-16 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 75.65 E-value: 7.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKY-GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNL-PMYRrarl 78
Cdd:PRK11650 1 MAGLKLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELePADR---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 GIsylpqeASVFRK------LSVEDNIWAIIENRNTLSTT-EKR-----DLLEslLGDLgLQEKRKQpaytLSGGERRRT 146
Cdd:PRK11650 77 DI------AMVFQNyalyphMSVRENMAYGLKIRGMPKAEiEERvaeaaRILE--LEPL-LDRKPRE----LSGGQRQRV 143
|
170 180
....*....|....*....|...
gi 609248018 147 EIARSLAIDPHFLLLDEPFAGID 169
Cdd:PRK11650 144 AMGRAIVREPAVFLFDEPLSNLD 166
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1-232 |
8.51e-16 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 75.72 E-value: 8.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLN--DHVITNLpmyrRARL 78
Cdd:PRK11288 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDgqEMRFAST----TAAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 --GISYLPQEASVFRKLSVEDNIW-------AIIENRNTLsTTEKRDLLESLLGDLGLQEKRKqpayTLSGGERRRTEIA 149
Cdd:PRK11288 78 aaGVAIIYQELHLVPEMTVAENLYlgqlphkGGIVNRRLL-NYEAREQLEHLGVDIDPDTPLK----YLSIGQRQMVEIA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 150 RSLAIDPHFLLLDEPFAGidpIAVHEIKN---IIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDK-AELL 225
Cdd:PRK11288 153 KALARNARVIAFDEPTSS---LSAREIEQlfrVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDmAQVD 229
|
....*..
gi 609248018 226 KNRLARE 232
Cdd:PRK11288 230 RDQLVQA 236
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-227 |
9.28e-16 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 75.88 E-value: 9.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY-GKKQVLR----------GIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIkPNGGDILLNDHVITNLPM 72
Cdd:COG4172 276 LEARDLKVWFpIKRGLFRrtvghvkavdGVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDGLSR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 73 YR----RARLGIsylpqeasVFR--------KLSVEDniwaIIE-----NRNTLSTTEKRDLLESLLGDLGLQekrkqPA 135
Cdd:COG4172 355 RAlrplRRRMQV--------VFQdpfgslspRMTVGQ----IIAeglrvHGPGLSAAERRARVAEALEEVGLD-----PA 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 136 YT------LSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIG-ILITdHN---VRdtlEIT 204
Cdd:COG4172 418 ARhrypheFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREhGLAyLFIS-HDlavVR---ALA 493
|
250 260
....*....|....*....|...
gi 609248018 205 RRSYIIKDGQIVAEGDKAELLKN 227
Cdd:COG4172 494 HRVMVMKDGKVVEQGPTEQVFDA 516
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
6-227 |
1.24e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 74.27 E-value: 1.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 6 VSNLQKKYGKK-----QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVI-TNLPMYR----- 74
Cdd:PRK13645 9 LDNVSYTYAKKtpfefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIpANLKKIKevkrl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 75 RARLGISYLPQEASVFRKLSVEDNIWAIIENRNTLSTTEKRdlLESLLGDLGL-QEKRKQPAYTLSGGERRRTEIARSLA 153
Cdd:PRK13645 89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK--VPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIA 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILvDKNIG--ILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK13645 167 MDGNTLVLDEPTGGLDPKGEEDFINLFERL-NKEYKkrIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
16-227 |
1.43e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 73.97 E-value: 1.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 16 KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR--RARLGISYLPQEASVFRKL 93
Cdd:PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWdiRNKAGMVFQNPDNQIVATI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 94 sVEDNIWAIIENRNTLSTtEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAV 173
Cdd:PRK13633 103 -VEEDVAFGPENLGIPPE-EIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGR 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 174 HEIKNIIRILVDK-NIGILITDHNVRDTLEiTRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK13633 181 REVVNTIKELNKKyGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
31-220 |
1.51e-15 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 74.53 E-value: 1.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 31 VVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVI------TNLPMYRRarlGISYLPQEASVFRKLSVEDNIWAIIE 104
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLfdaekgICLPPEKR---RIGYVFQDARLFPHYKVRGNLRYGMA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 105 NRNtlsttekRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILV 184
Cdd:PRK11144 103 KSM-------VAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA 175
|
170 180 190
....*....|....*....|....*....|....*..
gi 609248018 185 DK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGD 220
Cdd:PRK11144 176 REiNIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
19-219 |
2.05e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 73.63 E-value: 2.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR-----RARLGISYLPQEASVFRKL 93
Cdd:PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKdikqiRKKVGLVFQFPESQLFEET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 94 SVEDniWAIIENRNTLSTTEKRDLLESLLGDLGLQEK-RKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIA 172
Cdd:PRK13649 103 VLKD--VAFGPQNFGVSQEEAEALAREKLALVGISESlFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 609248018 173 VHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:PRK13649 181 RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
4-220 |
4.84e-15 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 73.59 E-value: 4.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQ-----------KKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIkPNGGDILLNDHVITNLPM 72
Cdd:PRK15134 276 LDVEQLQvafpirkgilkRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 73 YR----RARLGISYLPQEASVFRKLSVEDniwaIIE-----NRNTLSTTEKRDLLESLLGDLGLQ-EKRKQPAYTLSGGE 142
Cdd:PRK15134 355 RQllpvRHRIQVVFQDPNSSLNPRLNVLQ----IIEeglrvHQPTLSAAQREQQVIAVMEEVGLDpETRHRYPAEFSGGQ 430
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 143 RRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKN-IGILITDHNVRDTLEITRRSYIIKDGQIVAEGD 220
Cdd:PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHqLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
18-206 |
4.94e-15 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 71.42 E-value: 4.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 18 VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLpmyRRARLgISYLPQEASVFRKLSVED 97
Cdd:PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRF-MAYLGHLPGLKADLSTLE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 98 NIWAIienrNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARsLAIDPHFL-LLDEPFAGIDPIAVHEI 176
Cdd:PRK13543 102 NLHFL----CGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALAR-LWLSPAPLwLLDEPYANLDLEGITLV 176
|
170 180 190
....*....|....*....|....*....|
gi 609248018 177 KNIIRILVDKNIGILITDHNVRDTLEITRR 206
Cdd:PRK13543 177 NRMISAHLRGGGAALVTTHGAYAAPPVRTR 206
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
4-181 |
6.96e-15 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 70.99 E-value: 6.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY--GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR-RARLGI 80
Cdd:cd03244 3 IEFKNVSLRYrpNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDlRSRISI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 syLPQEASVFRKlSVEDN-----------IWAIIENrntlstTEKRDLLESLLGDLGLQEKRKQPayTLSGGERRRTEIA 149
Cdd:cd03244 83 --IPQDPVLFSG-TIRSNldpfgeysdeeLWQALER------VGLKEFVESLPGGLDTVVEEGGE--NLSVGQRQLLCLA 151
|
170 180 190
....*....|....*....|....*....|..
gi 609248018 150 RSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIR 181
Cdd:cd03244 152 RALLRKSKILVLDEATASVDPETDALIQKTIR 183
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
4-217 |
9.63e-15 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 72.83 E-value: 9.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY--GKKQ--VLRGIDFSMHKGEVVGLLGPNGAGKTTcFYSIVGFI-KPNGG-------DIL-LNDHVITNL 70
Cdd:PRK10535 5 LELKDIRRSYpsGEEQveVLKGISLDIYAGEMVAIVGASGSGKST-LMNILGCLdKPTSGtyrvagqDVAtLDADALAQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 71 pmyRRARLGisYLPQEASVFRKLSVEDN--IWAIIENrntLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEI 148
Cdd:PRK10535 84 ---RREHFG--FIFQRYHLLSHLTAAQNveVPAVYAG---LERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSI 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 149 ARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEiTRRSYIIKDGQIVA 217
Cdd:PRK10535 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIVR 223
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
10-226 |
1.21e-14 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 70.88 E-value: 1.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 10 QKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIllndhvitnlpmYRRAR------LGISYL 83
Cdd:COG1134 33 RTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV------------EVNGRvsalleLGAGFH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQeasvfrkLSVEDNIW---AIienrNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:COG1134 101 PE-------LTGRENIYlngRL----LGLSRKEIDEKFDEIVEFAELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:COG1134 170 VDEVLAVGDAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIA 235
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
4-164 |
1.39e-14 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 72.46 E-value: 1.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVitnlpmyrrarlGISYL 83
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETV------------KLAYV 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQeasvFRK-LSVEDNIWAIIenrntlstTEKRDLLEslLGDL---------------GLQEKRkqpAYTLSGGERRRTE 147
Cdd:PRK11819 393 DQ----SRDaLDPNKTVWEEI--------SGGLDIIK--VGNReipsrayvgrfnfkgGDQQKK---VGVLSGGERNRLH 455
|
170
....*....|....*..
gi 609248018 148 IARSLAIDPHFLLLDEP 164
Cdd:PRK11819 456 LAKTLKQGGNVLLLDEP 472
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1-169 |
1.94e-14 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 71.60 E-value: 1.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRarlGI 80
Cdd:PRK11000 1 MASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAER---GV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNIWAIIEnrntLSTTEKRDL-------LESL-LGDLgLQEKRKqpayTLSGGERRRTEIARSL 152
Cdd:PRK11000 78 GMVFQSYALYPHLSVAENMSFGLK----LAGAKKEEInqrvnqvAEVLqLAHL-LDRKPK----ALSGGQRQRVAIGRTL 148
|
170
....*....|....*..
gi 609248018 153 AIDPHFLLLDEPFAGID 169
Cdd:PRK11000 149 VAEPSVFLLDEPLSNLD 165
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-227 |
2.60e-14 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 71.64 E-value: 2.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNL----QKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPN----GGDILLNDHVITNLPM 72
Cdd:COG4172 4 MPLLSVEDLsvafGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPaahpSGSILFDGQDLLGLSE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 73 YRRARL---GISYLPQEAS-----VFRklsVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQE-KRKQPAY--TLSGG 141
Cdd:COG4172 84 RELRRIrgnRIAMIFQEPMtslnpLHT---IGKQIAEVLRLHRGLSGAAARARALELLERVGIPDpERRLDAYphQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 142 ERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGIL-ITdHN---VRdtlEITRRSYIIKDGQIV 216
Cdd:COG4172 161 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRElGMALLlIT-HDlgvVR---RFADRVAVMRQGEIV 236
|
250
....*....|.
gi 609248018 217 AEGDKAELLKN 227
Cdd:COG4172 237 EQGPTAELFAA 247
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
3-231 |
2.67e-14 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 71.68 E-value: 2.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKygKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISY 82
Cdd:PRK10982 250 ILEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQE---ASVFRKLSVEDNiwAIIENrntlsttekrdlLESLLGDLGLQEKR---------------KQPAY-----TLS 139
Cdd:PRK10982 328 VTEErrsTGIYAYLDIGFN--SLISN------------IRNYKNKVGLLDNSrmksdtqwvidsmrvKTPGHrtqigSLS 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 140 GGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473
|
250
....*....|..
gi 609248018 220 DKAELLKNRLAR 231
Cdd:PRK10982 474 DTKTTTQNEILR 485
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
7-186 |
3.30e-14 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 68.83 E-value: 3.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 7 SNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNG---GDILLNDHviTNLPMYRRARLGISYL 83
Cdd:cd03233 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsveGDIHYNGI--PYKEFAEKYPGEIIYV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEASVFRKLSVEDNIwaiienrntlsttekrDLLESLLGDlglQEKRKqpaytLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:cd03233 89 SEEDVHFPTLTVRETL----------------DFALRCKGN---EFVRG-----ISGGERKRVSIAEALVSRASVLCWDN 144
|
170 180
....*....|....*....|...
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDK 186
Cdd:cd03233 145 STRGLDSSTALEILKCIRTMADV 167
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
22-227 |
4.95e-14 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 71.04 E-value: 4.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 22 IDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR--RARLGISYLPQE--ASVFRKLSVED 97
Cdd:PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKlqALRRDIQFIFQDpyASLDPRQTVGD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 98 NIWAIIENRNTLSTTEKRDLLESLLGDLGLQ-EKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDpiaVHEI 176
Cdd:PRK10261 423 SIMEPLRVHGLLPGKAAAARVAWLLERVGLLpEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD---VSIR 499
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 177 KNIIRILVD--KNIGI--LITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PRK10261 500 GQIINLLLDlqRDFGIayLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN 554
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
10-214 |
6.55e-14 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 67.88 E-value: 6.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 10 QKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDhvitnlpmyrrarlGISYLPQEASV 89
Cdd:cd03250 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------SIAYVSQEPWI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 90 FRkLSVEDNI-----------WAIIEN---RNTLSTTEKRDLLEslLGDLGLqekrkqpayTLSGGERRRTEIARSLAID 155
Cdd:cd03250 78 QN-GTIRENIlfgkpfdeeryEKVIKAcalEPDLEILPDGDLTE--IGEKGI---------NLSGGQKQRISLARAVYSD 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 156 PHFLLLDEPFAGIDP-IAVHEIKNIIR-ILVDKNIGILITdHNVrDTLEITRRSYIIKDGQ 214
Cdd:cd03250 146 ADIYLLDDPLSAVDAhVGRHIFENCILgLLLNNKTRILVT-HQL-QLLPHADQIVVLDNGR 204
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
16-224 |
7.41e-14 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 70.26 E-value: 7.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 16 KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIkPNGGDILLNDHVITNLPM--YRRArlgISYLPQEASVFrKL 93
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPesWRKH---LSWVGQNPQLP-HG 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 94 SVEDN------------IWAIIENRNTLsttekrDLLESLlgDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:PRK11174 438 TLRDNvllgnpdasdeqLQQALENAWVS------EFLPLL--PQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLL 509
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDKNIGILITdHNVRDTLEITrRSYIIKDGQIVAEGDKAEL 224
Cdd:PRK11174 510 DEPTASLDAHSEQLVMQALNAASRRQTTLMVT-HQLEDLAQWD-QIWVMQDGQIVQQGDYAEL 570
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
29-213 |
8.86e-14 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 70.43 E-value: 8.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 29 GEVVGLLGPNGAGKTTCFYSIVGFIKPNGGD-ILLNDHVITNLPMYRRArlgISYLPQEASVFRKLSVEDNIWAIIENRN 107
Cdd:TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDaTVAGKSILTNISDVHQN---MGYCPQFDAIDDLLTGREHLYLYARLRG 2041
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 108 tLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKN 187
Cdd:TIGR01257 2042 -VPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREG 2120
|
170 180
....*....|....*....|....*.
gi 609248018 188 IGILITDHNVRDTLEITRRSYIIKDG 213
Cdd:TIGR01257 2121 RAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
7-217 |
9.80e-14 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 69.76 E-value: 9.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 7 SNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVItNLPMYRRA-RLGISYLPQ 85
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI-DFKSSKEAlENGISMVHQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 86 EASVFRKLSVEDNIWAIIENRNTLSTTEKR--DLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKmyRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVA 217
Cdd:PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA 214
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
22-232 |
3.83e-13 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 68.31 E-value: 3.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 22 IDFSMHKGEVVGLLGPNGAGKTTCFYSIVG-FIKPNGGDILLNDHVITNLPMYRRARLGISYLPQEAS---VFRKLSVED 97
Cdd:TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGaYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKrhgIVPILGVGK 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 98 NI-WAIIENRNTLSTTEKRDLLESLLGDLG-LQEKRKQPAY---TLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIA 172
Cdd:TIGR02633 359 NItLSVLKSFCFKMRIDAAAELQIIGSAIQrLKVKTASPFLpigRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 173 VHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIvaegdKAELLKNRLARE 232
Cdd:TIGR02633 439 KYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL-----KGDFVNHALTQE 493
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
4-227 |
5.64e-13 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 68.01 E-value: 5.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY--GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGgDILLnDHVITNLPMYRRARLGIS 81
Cdd:TIGR01271 1218 MDVQGLTAKYteAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEG-EIQI-DGVSWNSVTLQTWRKAFG 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASV----FRK------LSVEDNIWAIIENRNTLSTTEK-RDLLESLLGDLGlqekrkqpaYTLSGGERRRTEIAR 150
Cdd:TIGR01271 1296 VIPQKVFIfsgtFRKnldpyeQWSDEEIWKVAEEVGLKSVIEQfPDKLDFVLVDGG---------YVLSNGHKQLMCLAR 1366
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 151 SLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVdKNIGILITDHNVRDTLEItrRSYIIKDGQIVAEGDKAELLKN 227
Cdd:TIGR01271 1367 SILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLEC--QQFLVIEGSSVKQYDSIQKLLN 1440
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
22-232 |
7.00e-13 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 67.26 E-value: 7.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 22 IDFSMHKGEVVGLLGPNGAGKTTCFYSIVG-FIKPNGGDILLNDHVIT-NLPmyRRA-RLGISYLPQEasvfRK------ 92
Cdd:PRK13549 281 VSFSLRRGEILGIAGLVGAGRTELVQCLFGaYPGRWEGEIFIDGKPVKiRNP--QQAiAQGIAMVPED----RKrdgivp 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 93 -LSVEDNIWAIIENRNTLSTT-----EKRDLLESLLGdlgLQEKRKQPAY---TLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:PRK13549 355 vMGVGKNITLAALDRFTGGSRiddaaELKTILESIQR---LKVKTASPELaiaRLSGGNQQKAVLAKCLLLNPKILILDE 431
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 164 PFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIvaegdKAELLKNRLARE 232
Cdd:PRK13549 432 PTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL-----KGDLINHNLTQE 495
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
14-177 |
1.54e-12 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 66.52 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 14 GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTT-------CFYSIVGFIKPNGGDIllNDHVITNLpmyRRArlgISYLPQE 86
Cdd:PRK13657 346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTlinllqrVFDPQSGRILIDGTDI--RTVTRASL---RRN---IAVVFQD 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 87 ASVFRKlSVEDNIW------AIIENRNTLSTTEKRDLLES-------LLGDLGLQekrkqpaytLSGGERRRTEIARSLA 153
Cdd:PRK13657 418 AGLFNR-SIEDNIRvgrpdaTDEEMRAAAERAQAHDFIERkpdgydtVVGERGRQ---------LSGGERQRLAIARALL 487
|
170 180
....*....|....*....|....
gi 609248018 154 IDPHFLLLDEPFAGIDpiAVHEIK 177
Cdd:PRK13657 488 KDPPILILDEATSALD--VETEAK 509
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
4-219 |
2.40e-12 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 64.56 E-value: 2.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIL--LNDHVITNLpmyrrARLGis 81
Cdd:PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHyrMRDGQLRDL-----YALS-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 ylpqEASVfRKLSVEDniWAIIEN------RNTLST----------------TEKRDLLESLLGDLGLQEKR--KQPAyT 137
Cdd:PRK11701 80 ----EAER-RRLLRTE--WGFVHQhprdglRMQVSAggnigerlmavgarhyGDIRATAGDWLERVEIDAARidDLPT-T 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 138 LSGGERRRTEIARSLAIDPHFLLLDEPFAGIDpIAVH-EIKNIIRILV-DKNIGILITDHNvrdtLEITR----RSYIIK 211
Cdd:PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD-VSVQaRLLDLLRGLVrELGLAVVIVTHD----LAVARllahRLLVMK 226
|
....*...
gi 609248018 212 DGQIVAEG 219
Cdd:PRK11701 227 QGRVVESG 234
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
4-215 |
4.48e-12 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 64.11 E-value: 4.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY--GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGgDILLnDHVITNLPMYRRARLGIS 81
Cdd:cd03289 3 MTVKDLTAKYteGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEG-DIQI-DGVSWNSVPLQKWRKAFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFR-----------KLSVEDnIWAIIENRNTLSTTEK-RDLLESLLGDLGlqekrkqpaYTLSGGERRRTEIA 149
Cdd:cd03289 81 VIPQKVFIFSgtfrknldpygKWSDEE-IWKVAEEVGLKSVIEQfPGQLDFVLVDGG---------CVLSHGHKQLMCLA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 150 RSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVdKNIGILITDHNVRDTLEiTRRSYIIKDGQI 215
Cdd:cd03289 151 RSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLE-CQRFLVIEENKV 214
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
28-195 |
4.80e-12 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 64.81 E-value: 4.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 28 KGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDI---LLNDHVITNlpmYRRARLGiSYlpqeasvFRKLSvEDNIWAIIE 104
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNLGDYdeePSWDEVLKR---FRGTELQ-DY-------FKKLA-NGEIKVAHK 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 105 N--------------RNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDp 170
Cdd:COG1245 166 PqyvdlipkvfkgtvRELLEKVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLD- 244
|
170 180
....*....|....*....|....*...
gi 609248018 171 iaVHE---IKNIIRILVDKNIGILITDH 195
Cdd:COG1245 245 --IYQrlnVARLIRELAEEGKYVLVVEH 270
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
4-220 |
7.04e-12 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 63.27 E-value: 7.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGF--IKPNGGDILLNDHVITNLPMYRRARLGI- 80
Cdd:PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRedYEVTGGTVEFKGKDLLELSPEDRAGEGIf 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 ---SYLPQEASVFRKLSVEDNIWAIIENRN--TLSTTEKRDLLESLLGDLGLQEKRKQPAYTL--SGGERRRTEIARSLA 153
Cdd:PRK09580 82 mafQYPVEIPGVSNQFFLQTALNAVRSYRGqePLDRFDFQDLMEEKIALLKMPEDLLTRSVNVgfSGGEKKRNDILQMAV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 154 IDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRdTLEITRRSY--IIKDGQIVAEGD 220
Cdd:PRK09580 162 LEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYvhVLYQGRIVKSGD 229
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
28-164 |
7.67e-12 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 64.44 E-value: 7.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 28 KGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLN---DHVITnlpMYRRARLGiSYlpqeasvFRKLSvEDNIWAIIE 104
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEpswDEVLK---RFRGTELQ-NY-------FKKLY-NGEIKVVHK 165
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 609248018 105 N--------------RNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEP 164
Cdd:PRK13409 166 PqyvdlipkvfkgkvRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
19-228 |
9.42e-12 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 64.27 E-value: 9.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHvitNLPMYRRARL--GISYLPQEASVFRKlSVE 96
Cdd:PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH---DLRDYTLASLrnQVALVSQNVHLFND-TIA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 97 DNIWAIIENRNTLSTTEKR-------DLLESLlgDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGID 169
Cdd:PRK11176 435 NNIAYARTEQYSREQIEEAarmayamDFINKM--DNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 170 PIAVHEIKNIIRILvDKNIGILITDHNVrDTLEITRRSYIIKDGQIVAEGDKAELLKNR 228
Cdd:PRK11176 513 TESERAIQAALDEL-QKNRTSLVIAHRL-STIEKADEILVVEDGEIVERGTHAELLAQN 569
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
4-208 |
1.09e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 61.89 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVI-TNLPMYRRArlgISY 82
Cdd:PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIkKDLCTYQKQ---LCF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 83 LPQEASVFRKLSVEDNIWAIIENRNT-LSTTEkrdllesLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGaVGITE-------LCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNvrdTLEITRRSY 208
Cdd:PRK13540 152 DEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ---DLPLNKADY 195
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
8-164 |
1.48e-11 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 63.42 E-value: 1.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 8 NLQKKY-GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIllndhvitnlpmyrRARLGIS--YLP 84
Cdd:TIGR03719 9 RVSKVVpPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEA--------------RPQPGIKvgYLP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 85 QEASVFRKLSVEDN-------IWAIIENRNTLST--TEKRDLLESLLGDLG-LQEK----------RK------------ 132
Cdd:TIGR03719 75 QEPQLDPTKTVRENveegvaeIKDALDRFNEISAkyAEPDADFDKLAAEQAeLQEIidaadawdldSQleiamdalrcpp 154
|
170 180 190
....*....|....*....|....*....|....
gi 609248018 133 --QPAYTLSGGERRRTEIARSLAIDPHFLLLDEP 164
Cdd:TIGR03719 155 wdADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
5-172 |
2.41e-11 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 62.83 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPN-------GGDILLNDHvitnlpmyrRAR 77
Cdd:NF033858 3 RLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQqgrvevlGGDMADARH---------RRA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 LG--ISYLPQ--EASVFRKLSVEDNI--WAiienrnTL---STTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEI 148
Cdd:NF033858 74 VCprIAYMPQglGKNLYPTLSVFENLdfFG------RLfgqDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGL 147
|
170 180
....*....|....*....|....
gi 609248018 149 ARSLAIDPHFLLLDEPFAGIDPIA 172
Cdd:NF033858 148 CCALIHDPDLLILDEPTTGVDPLS 171
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
29-196 |
3.55e-11 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 61.23 E-value: 3.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 29 GEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISY---LPQEASVFRKLSVEDNIWAIIEN 105
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFtklLEGDVKVIVKPQYVDLIPKAVKG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 106 --RNTLSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRIL 183
Cdd:cd03236 106 kvGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL 185
|
170
....*....|...
gi 609248018 184 VDKNIGILITDHN 196
Cdd:cd03236 186 AEDDNYVLVVEHD 198
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
16-223 |
3.91e-11 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 62.11 E-value: 3.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 16 KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVG-----FIkpnGGDILLNDHVItNLPMYRRA-RLGISYLPQEasv 89
Cdd:NF040905 273 RKVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGrsygrNI---SGTVFKDGKEV-DVSTVSDAiDAGLAYVTED--- 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 90 fRK---LSVEDNIwaiieNRNT----LSTTEKRDLL----ESLLGdlglQEKRK----------QPAYTLSGGERRRTEI 148
Cdd:NF040905 346 -RKgygLNLIDDI-----KRNItlanLGKVSRRGVIdeneEIKVA----EEYRKkmniktpsvfQKVGNLSGGNQQKVVL 415
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 149 ARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAE 223
Cdd:NF040905 416 SKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGRITGELPREE 490
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
4-225 |
8.77e-11 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 60.19 E-value: 8.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKK---------QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT-NLPMY 73
Cdd:PRK15112 5 LEVRNLSKTFRYRtgwfrrqtvEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHfGDYSY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 74 RRARlgISYLPQEASVfrKLSVEDNIWAIIE---NRNT-LSTTEKRDLLESLLGDLGLqekRKQPAY----TLSGGERRR 145
Cdd:PRK15112 85 RSQR--IRMIFQDPST--SLNPRQRISQILDfplRLNTdLEPEQREKQIIETLRQVGL---LPDHASyyphMLAPGQKQR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 146 TEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKN-IGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQgISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV 237
|
.
gi 609248018 225 L 225
Cdd:PRK15112 238 L 238
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
18-193 |
1.11e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 61.08 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 18 VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIllndhvitnlpmyrRARLGISYLPQEASVFRKlSVED 97
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI--------------KHSGRISFSPQTSWIMPG-TIKD 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 98 NI-WAIIENRNTLSTTEKRDLLESllgDLG-LQEKRKQP----AYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPI 171
Cdd:TIGR01271 506 NIiFGLSYDEYRYTSVIKACQLEE---DIAlFPEKDKTVlgegGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582
|
170 180
....*....|....*....|....
gi 609248018 172 AVHEI--KNIIRILVDKNiGILIT 193
Cdd:TIGR01271 583 TEKEIfeSCLCKLMSNKT-RILVT 605
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
4-223 |
1.21e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 60.79 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQkkyGKKqvLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGISYL 83
Cdd:PRK10762 258 LKVDNLS---GPG--VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQEasvfRK-------LSVEDNiwaiienrntLSTTEKRDLlESLLGDLGLQEK-----------------RKQPAYTLS 139
Cdd:PRK10762 333 SED----RKrdglvlgMSVKEN----------MSLTALRYF-SRAGGSLKHADEqqavsdfirlfniktpsMEQAIGLLS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 140 GGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEG 219
Cdd:PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477
|
....
gi 609248018 220 DKAE 223
Cdd:PRK10762 478 TREQ 481
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
19-225 |
1.50e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 60.73 E-value: 1.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVitnlpmyrrarlgiSYLPQEASVfRKLSVEDN 98
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV--------------AYVPQQAWI-QNDSLREN 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 99 IW---AIIENRntlstteKRDLLES--LLGDL-----GLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGI 168
Cdd:TIGR00957 719 ILfgkALNEKY-------YQQVLEAcaLLPDLeilpsGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 169 DP-IAVHEIKNII--RILVDKNIGILITdHNVrDTLEITRRSYIIKDGQIVAEGDKAELL 225
Cdd:TIGR00957 792 DAhVGKHIFEHVIgpEGVLKNKTRILVT-HGI-SYLPQVDVIIVMSGGKISEMGSYQELL 849
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
12-195 |
1.62e-10 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 58.41 E-value: 1.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 12 KYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCF-----YSIVGFIKpngGDILLNDHVITnlPMYRRarlGISYLPQE 86
Cdd:cd03232 16 KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLdvlagRKTAGVIT---GEILINGRPLD--KNFQR---STGYVEQQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 87 ASVFRKLSVedniwaiienRNTLsttekrdLLESLLGDLGLQekrkqpaytlsggERRRTEIARSLAIDPHFLLLDEPFA 166
Cdd:cd03232 88 DVHSPNLTV----------REAL-------RFSALLRGLSVE-------------QRKRLTIGVELAAKPSILFLDEPTS 137
|
170 180
....*....|....*....|....*....
gi 609248018 167 GIDPIAVHEIKNIIRILVDKNIGILITDH 195
Cdd:cd03232 138 GLDSQAAYNIVRFLKKLADSGQAILCTIH 166
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
2-169 |
1.75e-10 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 59.02 E-value: 1.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKYGKKQ----VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRAR 77
Cdd:PRK10584 5 NIVEVHHLKKSVGQGEhelsILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 L---GISYLPQEASVFRKLSVEDNIW--AIIENRntlSTTEKRDLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSL 152
Cdd:PRK10584 85 LrakHVGFVFQSFMLIPTLNALENVElpALLRGE---SSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF 161
|
170
....*....|....*..
gi 609248018 153 AIDPHFLLLDEPFAGID 169
Cdd:PRK10584 162 NGRPDVLFADEPTGNLD 178
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
4-164 |
1.91e-10 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 60.29 E-value: 1.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHvitnlpmyrrARLGisYL 83
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----------ANIG--YY 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 84 PQE-ASVFRK-LSVEDNI--WaiienrntlsTTEKRD--LLESLLGDLGL-QEKRKQPAYTLSGGERRRTEIARSLAIDP 156
Cdd:PRK15064 388 AQDhAYDFENdLTLFDWMsqW----------RQEGDDeqAVRGTLGRLLFsQDDIKKSVKVLSGGEKGRMLFGKLMMQKP 457
|
....*...
gi 609248018 157 HFLLLDEP 164
Cdd:PRK15064 458 NVLVMDEP 465
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
3-225 |
3.42e-10 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 59.34 E-value: 3.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKYGKKQ--VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYR-RARLG 79
Cdd:PRK10789 313 ELDVNIRQFTYPQTDhpALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSwRSRLA 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 IsyLPQEASVFRKlSVEDNIwAIIENRNTLSTTEKRDLLESLLGDL-----GLQEKRKQPAYTLSGGERRRTEIARSLAI 154
Cdd:PRK10789 393 V--VSQTPFLFSD-TVANNI-ALGRPDATQQEIEHVARLASVHDDIlrlpqGYDTEVGERGVMLSGGQKQRISIARALLL 468
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 609248018 155 DPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIgILITDHNVR---DTLEITrrsyIIKDGQIVAEGDKAELL 225
Cdd:PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWGEGRT-VIISAHRLSaltEASEIL----VMQHGHIAQRGNHDQLA 537
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
3-228 |
3.72e-10 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 59.35 E-value: 3.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 3 TLQVSNLQKKYGK-KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPmYRRARLGIS 81
Cdd:PRK10790 340 RIDIDNVSFAYRDdNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS-HSVLRQGVA 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVF-----------RKLSvEDNIWAIIEnrnTLSTTE-KRDLLESLLGDLGLQekrkqpAYTLSGGERRRTEIA 149
Cdd:PRK10790 419 MVQQDPVVLadtflanvtlgRDIS-EEQVWQALE---TVQLAElARSLPDGLYTPLGEQ------GNNLSVGQKQLLALA 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 150 RSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRiLVDKNIGILITDHNVR-----DTLEITRRsyiikdGQIVAEGDKAEL 224
Cdd:PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLStiveaDTILVLHR------GQAVEQGTHQQL 561
|
....
gi 609248018 225 LKNR 228
Cdd:PRK10790 562 LAAQ 565
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
18-188 |
5.38e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 58.33 E-value: 5.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 18 VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHV--------ITNLPMYRRARLGISYLP-QEAS 88
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIsfssqfswIMPGTIKENIIFGVSYDEyRYKS 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 89 VFRKLSVEDNIWAIIENRNTLsttekrdlleslLGDLGLqekrkqpayTLSGGERRRTEIARSLAIDPHFLLLDEPFAGI 168
Cdd:cd03291 132 VVKACQLEEDITKFPEKDNTV------------LGEGGI---------TLSGGQRARISLARAVYKDADLYLLDSPFGYL 190
|
170 180
....*....|....*....|....*....
gi 609248018 169 DPIAVHEI---------KNIIRILVDKNI 188
Cdd:cd03291 191 DVFTEKEIfescvcklmANKTRILVTSKM 219
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
17-225 |
6.44e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 58.68 E-value: 6.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 17 QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPM-YRRARLGIsyLPQEASVF----- 90
Cdd:COG5265 372 PILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQaSLRAAIGI--VPQDTVLFndtia 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 91 ------RKLSVEDNIWAIIENRNTlsttekRDLLESL-------LGDLGLQekrkqpaytLSGGERRRTEIARSLAIDPH 157
Cdd:COG5265 450 yniaygRPDASEEEVEAAARAAQI------HDFIESLpdgydtrVGERGLK---------LSGGEKQRVAIARTLLKNPP 514
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 158 FLLLDEPFAGIDPIAVHEIKNIIRIlVDKNigilitdhnvRDTLEITRR-SYII--------KDGQIVAEGDKAELL 225
Cdd:COG5265 515 ILIFDEATSALDSRTERAIQAALRE-VARG----------RTTLVIAHRlSTIVdadeilvlEAGRIVERGTHAELL 580
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
8-164 |
1.31e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 57.82 E-value: 1.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 8 NLQKKYG-KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLndhvitnLPMYRrarlgISYLPQE 86
Cdd:PRK11819 11 RVSKVVPpKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP-------APGIK-----VGYLPQE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 87 ASVFRKLSVEDN-------IWAIIENRNTLST--TEKRDLLESLLGDLG-LQEK----------RK-------------- 132
Cdd:PRK11819 79 PQLDPEKTVRENveegvaeVKAALDRFNEIYAayAEPDADFDALAAEQGeLQEIidaadawdldSQleiamdalrcppwd 158
|
170 180 190
....*....|....*....|....*....|..
gi 609248018 133 QPAYTLSGGERRRTEIARSLAIDPHFLLLDEP 164
Cdd:PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-226 |
1.42e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 57.06 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYG-KKQVLRGID---FSMHKGEVVGLLGPNGAGKTTCFYSIVGFI----KPNGGDILLNDHVITNLPM 72
Cdd:PRK11022 1 MALLNVDKLSVHFGdESAPFRAVDrisYSVKQGEVVGIVGESGSGKSVSSLAIMGLIdypgRVMAEKLEFNGQDLQRISE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 73 YRRARL---GISYLPQEA--SVFRKLSVEDNIWAIIENRNTLSTTEKRDLLESLLGDLGLQEkrkqPA-------YTLSG 140
Cdd:PRK11022 81 KERRNLvgaEVAMIFQDPmtSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD----PAsrldvypHQLSG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 141 GERRRTEIARSLAIDPHFLLLDEPFAGIDpiaVHEIKNIIRILVD----KNIGILITDHNVRDTLEITRRSYIIKDGQIV 216
Cdd:PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALD---VTIQAQIIELLLElqqkENMALVLITHDLALVAEAAHKIIVMYAGQVV 233
|
250
....*....|
gi 609248018 217 AEGDKAELLK 226
Cdd:PRK11022 234 ETGKAHDIFR 243
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-226 |
1.83e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 57.17 E-value: 1.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNL----QKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNdhvitNLPMYRRARLG 79
Cdd:PRK10261 13 LAVENLniafMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCD-----KMLLRRRSRQV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 80 ISYLPQEASVFRKLSVEDNIWAIIENRNTLS--------TTEKRDLLESLLGDLGLQEKRK---------------QPAY 136
Cdd:PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNpvftvgeqIAESIRLHQGASREEAMVEAKRmldqvripeaqtilsRYPH 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 137 TLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILV-DKNIGILITDHNVRDTLEITRRSYIIKDGQI 215
Cdd:PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQkEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247
|
250
....*....|.
gi 609248018 216 VAEGDKAELLK 226
Cdd:PRK10261 248 VETGSVEQIFH 258
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
18-228 |
2.43e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 57.26 E-value: 2.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 18 VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYrRARLGISYLPQEASVFR------ 91
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLH-DLRFKITIIPQDPVLFSgslrmn 1379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 92 -----KLSVEDNIWAiienrntLSTTEKRDLLESLLGdlGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFA 166
Cdd:TIGR00957 1380 ldpfsQYSDEEVWWA-------LELAHLKTFVSALPD--KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATA 1450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 167 GIDPIAVHEIKNIIRILVDkNIGILITDHNVRDTLEITRrsYIIKDGQIVAE-GDKAELLKNR 228
Cdd:TIGR00957 1451 AVDLETDNLIQSTIRTQFE-DCTVLTIAHRLNTIMDYTR--VIVLDKGEVAEfGAPSNLLQQR 1510
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
14-196 |
4.98e-09 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 56.02 E-value: 4.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 14 GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIllndhvitnlpmYRRARLGISYLPQEASVFRKL 93
Cdd:PLN03073 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV------------FRSAKVRMAVFSQHHVDGLDL 587
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 94 SVEDNIWAIienRNTLSTTEKRdlLESLLGDLGLQEKRK-QPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIA 172
Cdd:PLN03073 588 SSNPLLYMM---RCFPGVPEQK--LRAHLGSFGVTGNLAlQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA 662
|
170 180
....*....|....*....|....
gi 609248018 173 VheiKNIIRILVDKNIGILITDHN 196
Cdd:PLN03073 663 V---EALIQGLVLFQGGVLMVSHD 683
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
12-220 |
5.66e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 55.89 E-value: 5.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 12 KYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSI-----VGFIkpNGGDILLNDHVITNlpMYRRArlgISYLPQE 86
Cdd:TIGR00956 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLaervtTGVI--TGGDRLVNGRPLDS--SFQRS---IGYVQQQ 844
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 87 ASVFRKLSVEDNIW--AIIENRNTLSTTEKRDLLESLLGDLGLQEKRKQ----PAYTLSGGERRRTEIARSLAIDPHFLL 160
Cdd:TIGR00956 845 DLHLPTSTVRESLRfsAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAvvgvPGEGLNVEQRKRLTIGVELVAKPKLLL 924
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 161 -LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTL--EITRRSYIIKDGQIVAEGD 220
Cdd:TIGR00956 925 fLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILfeEFDRLLLLQKGGQTVYFGD 987
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
20-224 |
5.68e-09 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 55.09 E-value: 5.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 20 RGIDFSMHKGEVVGLLGPNGAGKT-TCFySIVGFIKPN----GGDILLNDHVItnLPMYRRARLGISYLPQEASVFRKLS 94
Cdd:PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSlTCA-AALGILPAGvrqtAGRVLLDGKPV--APCALRGRKIATIMQNPRSAFNPLH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 95 vedNIWA-IIENRNTLSTTEKRDLLESLLGDLGLQEKRKQP---AYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDP 170
Cdd:PRK10418 97 ---TMHThARETCLALGKPADDATLTAALEAVGLENAARVLklyPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 171 IAVHEIKNII-RILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAEL 224
Cdd:PRK10418 174 VAQARILDLLeSIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
15-169 |
6.70e-09 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 55.10 E-value: 6.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 15 KKQVLR---GIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP--MYRRARLGISYLPQE--A 87
Cdd:PRK15079 30 PPKTLKavdGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKddEWRAVRSDIQMIFQDplA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 88 SVFRKLSVEDniwAIIENRNT----LSTTEKRDLLESLLGDLGLQEK--RKQPaYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:PRK15079 110 SLNPRMTIGE---IIAEPLRTyhpkLSRQEVKDRVKAMMLKVGLLPNliNRYP-HEFSGGQCQRIGIARALILEPKLIIC 185
|
....*...
gi 609248018 162 DEPFAGID 169
Cdd:PRK15079 186 DEPVSALD 193
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
13-215 |
7.62e-09 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 55.56 E-value: 7.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 13 YGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVitnlpmyrraRLG------ISYLPQE 86
Cdd:PRK10636 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI----------KLGyfaqhqLEFLRAD 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 87 ASVFRKLSvedniwaiienrnTLSTTEKRDLLESLLGDLGLQ-EKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPF 165
Cdd:PRK10636 392 ESPLQHLA-------------RLAPQELEQKLRDYLGGFGFQgDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPT 458
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 609248018 166 AGIDpiaVHEIKNIIRILVDKNIGILITDHN---VRDTleiTRRSYIIKDGQI 215
Cdd:PRK10636 459 NHLD---LDMRQALTEALIDFEGALVVVSHDrhlLRST---TDDLYLVHDGKV 505
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
9-227 |
8.98e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 55.37 E-value: 8.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 9 LQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITN--LPMYRRArlgISYLPQE 86
Cdd:PLN03232 1242 LRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfgLTDLRRV---LSIIPQS 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 87 ASVFRKlSVEDNIWAIIENRNT-----LSTTEKRDLLESllGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:PLN03232 1319 PVLFSG-TVRFNIDPFSEHNDAdlweaLERAHIKDVIDR--NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVL 1395
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 162 DEPFAGIDPIAVHEIKNIIRILVdKNIGILITDHNVrDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PLN03232 1396 DEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRL-NTIIDCDKILVLSSGQVLEYDSPQELLSR 1459
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
5-164 |
1.32e-08 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 54.57 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 5 QVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDIllndHVITnlpmyrraRLGISYLP 84
Cdd:PRK11147 321 EMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI----HCGT--------KLEVAYFD 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 85 Q-EASVFRKLSVEDNiwaIIENRNTLSTT-EKRDLLeSLLGDLGLQEKR-KQPAYTLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:PRK11147 389 QhRAELDPEKTVMDN---LAEGKQEVMVNgRPRHVL-GYLQDFLFHPKRaMTPVKALSGGERNRLLLARLFLKPSNLLIL 464
|
...
gi 609248018 162 DEP 164
Cdd:PRK11147 465 DEP 467
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
121-224 |
1.91e-08 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 54.25 E-value: 1.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 121 LLGDLGLQEKR-KQPAYTLSGGERRRTEIARSL---AIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHN 196
Cdd:TIGR00630 812 TLCDVGLGYIRlGQPATTLSGGEAQRIKLAKELskrSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHN 891
|
90 100 110
....*....|....*....|....*....|....*..
gi 609248018 197 vrdtLEITRRS-YII--------KDGQIVAEGDKAEL 224
Cdd:TIGR00630 892 ----LDVIKTAdYIIdlgpeggdGGGTVVASGTPEEV 924
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
9-197 |
2.31e-08 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 52.19 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 9 LQKKYGKKQVL-RGIDFSmhKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNdhvitnlpmyrraRLGISYLPQEA 87
Cdd:cd03222 6 CVKRYGVFFLLvELGVVK--EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD-------------GITPVYKPQYI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 88 SvfrklsvedniwaiienrntlsttekrdllesllgdlglqekrkqpaytLSGGERRRTEIARSLAIDPHFLLLDEPFAG 167
Cdd:cd03222 71 D-------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAY 101
|
170 180 190
....*....|....*....|....*....|.
gi 609248018 168 IDPIAVHEIKNIIRILVDKNI-GILITDHNV 197
Cdd:cd03222 102 LDIEQRLNAARAIRRLSEEGKkTALVVEHDL 132
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
22-172 |
3.23e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 53.59 E-value: 3.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 22 IDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYRRARLGisYLPQEASVFRKLSVEDNIW- 100
Cdd:NF033858 285 VSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDAGDIATRRRVG--YMSQAFSLYGELTVRQNLEl 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 101 ---------AIIENRntlsttekrdlLESLLGDLGLQEKRKQPAYTLSGGERRRTeiarSLAI----DPHFLLLDEPFAG 167
Cdd:NF033858 363 harlfhlpaAEIAAR-----------VAEMLERFDLADVADALPDSLPLGIRQRL----SLAVavihKPELLILDEPTSG 427
|
....*
gi 609248018 168 IDPIA 172
Cdd:NF033858 428 VDPVA 432
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
16-225 |
6.63e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 52.40 E-value: 6.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 16 KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIkPN------GGDILLNdhvitnlpmyrrarlGISYLPQEASV 89
Cdd:PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-PSppvvypSGDIRFH---------------GESLLHASEQT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 90 FRKLSvEDNIWAIIE----NRNTLSTTEKRdLLESLLGDLGLqekRKQPA------------------------YTLSGG 141
Cdd:PRK15134 86 LRGVR-GNKIAMIFQepmvSLNPLHTLEKQ-LYEVLSLHRGM---RREAArgeilncldrvgirqaakrltdypHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 142 ERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDK-NIGILITDHNVRDTLEITRRSYIIKDGQIVAEGD 220
Cdd:PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
|
....*
gi 609248018 221 KAELL 225
Cdd:PRK15134 241 AATLF 245
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
133-198 |
7.21e-08 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 50.78 E-value: 7.21e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 133 QPAYTLSGGERRRTEIARSLAIDPH--FLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVR 198
Cdd:cd03238 83 QKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-169 |
7.51e-08 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 52.03 E-value: 7.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKY----GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNG---GDILLNDHVITNLPMY 73
Cdd:PRK09473 10 DALLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGrigGSATFNGREILNLPEK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 74 RRARL---GISYLPQE--ASVFRKLSVEDNIWAIIENRNTLSTTEKrdLLES--LLGDLGLQEKRKQ----PaYTLSGGE 142
Cdd:PRK09473 90 ELNKLraeQISMIFQDpmTSLNPYMRVGEQLMEVLMLHKGMSKAEA--FEESvrMLDAVKMPEARKRmkmyP-HEFSGGM 166
|
170 180
....*....|....*....|....*..
gi 609248018 143 RRRTEIARSLAIDPHFLLLDEPFAGID 169
Cdd:PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALD 193
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
4-169 |
1.03e-07 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 51.50 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKY--------GKKQV--LRGIDFSMHKGEVVGLLGPNGAGKTTcFYSIVGFIKP--------NGGDILLNDH 65
Cdd:PRK11308 6 LQAIDLKKHYpvkrglfkPERLVkaLDGVSFTLERGKTLAVVGESGCGKST-LARLLTMIETptggelyyQGQDLLKADP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 66 VITNLpmyRRARLGIsylpqeasVFRK----LSVEDNIWAIIENR---NT-LSTTEKRDLLESLLGDLGLQ-EKRKQPAY 136
Cdd:PRK11308 85 EAQKL---LRQKIQI--------VFQNpygsLNPRKKVGQILEEPlliNTsLSAAERREKALAMMAKVGLRpEHYDRYPH 153
|
170 180 190
....*....|....*....|....*....|...
gi 609248018 137 TLSGGERRRTEIARSLAIDPHFLLLDEPFAGID 169
Cdd:PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
16-227 |
1.25e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 51.90 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 16 KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPnggdilLNDHVITnlpmyrrARLGISYLPQEASVFRKlSV 95
Cdd:PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH------AETSSVV-------IRGSVAYVPQVSWIFNA-TV 695
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 96 EDNI-----------WAIIEN---RNTLSTTEKRDLLEslLGDLGLQekrkqpaytLSGGERRRTEIARSLAIDPHFLLL 161
Cdd:PLN03232 696 RENIlfgsdfeseryWRAIDVtalQHDLDLLPGRDLTE--IGERGVN---------ISGGQKQRVSMARAVYSNSDIYIF 764
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 162 DEPFAGIDPIAVHEIKN-IIRILVDKNIGILITdhNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PLN03232 765 DDPLSALDAHVAHQVFDsCMKDELKGKTRVLVT--NQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
18-228 |
1.26e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 52.09 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 18 VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMyRRARLGISYLPQEASVFRKlSVED 97
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL-RELRRQFSMIPQDPVLFDG-TVRQ 1402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 98 N-----------IWAIIEnrntLSTTEKRDLLESllgdLGLQEKRKQPAYTLSGGERRRTEIARS-LAIDPHFLLLDEPF 165
Cdd:PTZ00243 1403 NvdpfleassaeVWAALE----LVGLRERVASES----EGIDSRVLEGGSNYSVGQRQLMCMARAlLKKGSGFILMDEAT 1474
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 609248018 166 AGIDPIAVHEIKNIIRILVDKNIGILITD--HNVRDTLEItrrsyIIKDGQIVAE-GDKAELLKNR 228
Cdd:PTZ00243 1475 ANIDPALDRQIQATVMSAFSAYTVITIAHrlHTVAQYDKI-----IVMDHGAVAEmGSPRELVMNR 1535
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
22-74 |
1.62e-07 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 51.34 E-value: 1.62e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 22 IDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVIT--NLPMYR 74
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTadNREAYR 405
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
7-173 |
1.72e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 51.32 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 7 SNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDH-----VITNLPMYRRArlGIS 81
Cdd:PRK10636 5 SSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNwqlawVNQETPALPQP--ALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YLPQEASVFRKLSVEDNIWAIIENRNTLSTTE-KRDLLE---------SLLGDLGL-QEKRKQPAYTLSGGERRRTEIAR 150
Cdd:PRK10636 83 YVIDGDREYRQLEAQLHDANERNDGHAIATIHgKLDAIDawtirsraaSLLHGLGFsNEQLERPVSDFSGGWRMRLNLAQ 162
|
170 180
....*....|....*....|...
gi 609248018 151 SLAIDPHFLLLDEPFAGIDPIAV 173
Cdd:PRK10636 163 ALICRSDLLLLDEPTNHLDLDAV 185
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
121-219 |
1.83e-07 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 50.69 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 121 LLGDLGLQE-KRKQPAYTLSGGERRRTEIARSL---AIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHN 196
Cdd:cd03271 152 TLCDVGLGYiKLGQPATTLSGGEAQRIKLAKELskrSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231
|
90 100 110
....*....|....*....|....*....|..
gi 609248018 197 vrdtLEITRRS-YII--------KDGQIVAEG 219
Cdd:cd03271 232 ----LDVIKCAdWIIdlgpeggdGGGQVVASG 259
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
15-202 |
2.05e-07 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 49.96 E-value: 2.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 15 KKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKpnggdillndhvitNLPMYRRARLGISYLPQEASVFRKLS 94
Cdd:COG2401 42 ERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALK--------------GTPVAGCVDVPDNQFGREASLIDAIG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 95 VEDNIWAIIEnrntlsttekrdllesLLGDLGLQEK---RKQPAyTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPI 171
Cdd:COG2401 108 RKGDFKDAVE----------------LLNAVGLSDAvlwLRRFK-ELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQ 170
|
170 180 190
....*....|....*....|....*....|....
gi 609248018 172 AVHEIKNIIRILVDK-NIGILITDH--NVRDTLE 202
Cdd:COG2401 171 TAKRVARNLQKLARRaGITLVVATHhyDVIDDLQ 204
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
4-211 |
2.14e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 51.18 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKK---QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLND-HVITNLPM-YRRARL 78
Cdd:PTZ00265 383 IQFKNVRFHYDTRkdvEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDsHNLKDINLkWWRSKI 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 79 GIsyLPQEASVFRKlSVEDNI----WAIIE--------NRNTLSTTEKRDLLES----LLGDL----------GLQEKRK 132
Cdd:PTZ00265 463 GV--VSQDPLLFSN-SIKNNIkyslYSLKDlealsnyyNEDGNDSQENKNKRNScrakCAGDLndmsnttdsnELIEMRK 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 133 Q-----------------------------------PAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDpiavheik 177
Cdd:PTZ00265 540 NyqtikdsevvdvskkvlihdfvsalpdkyetlvgsNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD-------- 611
|
250 260 270
....*....|....*....|....*....|....
gi 609248018 178 NIIRILVDKNIGILITDHNvRDTLEITRRSYIIK 211
Cdd:PTZ00265 612 NKSEYLVQKTINNLKGNEN-RITIIIAHRLSTIR 644
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
12-215 |
2.46e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 50.78 E-value: 2.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 12 KYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGfikpnggdillnDHvitnlpmyrrarlgisylPQEAS--- 88
Cdd:PRK10938 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG------------DH------------------PQGYSndl 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 89 -VF--RKLSVEdNIWAIIEN------------------RNT-LS------------TTEKRDLLESLLGDLGLQEK-RKQ 133
Cdd:PRK10938 319 tLFgrRRGSGE-TIWDIKKHigyvssslhldyrvstsvRNViLSgffdsigiyqavSDRQQKLAQQWLDILGIDKRtADA 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 134 PAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILV-DKNIGILITDHNVRDTLE-ITRRSYIIK 211
Cdd:PRK10938 398 PFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLIsEGETQLLFVSHHAEDAPAcITHRLEFVP 477
|
....
gi 609248018 212 DGQI 215
Cdd:PRK10938 478 DGDI 481
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
16-169 |
2.94e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 50.93 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 16 KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILlndhvitnlpmyrrARLGISYLPQEASVFRKlSV 95
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW--------------AERSIAYVPQQAWIMNA-TV 737
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 609248018 96 EDNIWAIIENRNT-LSTTEKRDLLESLLGDL--GLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGID 169
Cdd:PTZ00243 738 RGNILFFDEEDAArLADAVRVSQLEADLAQLggGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-164 |
4.17e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 50.33 E-value: 4.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTcfysivgFIKPNGGDILLNDHVITnlpmYRRaRLGI 80
Cdd:PRK11147 1 MSLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST-------LMKILNGEVLLDDGRII----YEQ-DLIV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQ------EASVF------------------------------RKLSVEDNIWAIIENRNtLSTTEKRdlLESLLGD 124
Cdd:PRK11147 69 ARLQQdpprnvEGTVYdfvaegieeqaeylkryhdishlvetdpseKNLNELAKLQEQLDHHN-LWQLENR--INEVLAQ 145
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 609248018 125 LGLQEKrkQPAYTLSGGERRRTEIARSLAIDPHFLLLDEP 164
Cdd:PRK11147 146 LGLDPD--AALSSLSGGWLRKAALGRALVSNPDVLLLDEP 183
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
18-227 |
4.54e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 50.51 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 18 VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLP-MYRRARLGIsyLPQEASVFRKlSVE 96
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGlMDLRKVLGI--IPQAPVLFSG-TVR 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 97 DNIWAIIENRNTlsttekrDLLESL----LGD------LGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFA 166
Cdd:PLN03130 1331 FNLDPFNEHNDA-------DLWESLerahLKDvirrnsLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATA 1403
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 609248018 167 GIDPIAVHEIKNIIRILVdKNIGILITDHNVrDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PLN03130 1404 AVDVRTDALIQKTIREEF-KSCTMLIIAHRL-NTIIDCDRILVLDAGRVVEFDTPENLLSN 1462
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
90-227 |
9.79e-07 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 49.44 E-value: 9.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 90 FRKLSVEDniWAIIENRNTLSTTEKRDLLE------SLLGDLGLQEKRKQPAY-TLSGGERRRTEIARSLAIDPHFL--L 160
Cdd:PRK00635 424 FQQMSLQE--LFIFLSQLPSKSLSIEEVLQglksrlSILIDLGLPYLTPERALaTLSGGEQERTALAKHLGAELIGItyI 501
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 161 LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVR------DTLEITRRSYIIkDGQIVAEGDKAELLKN 227
Cdd:PRK00635 502 LDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQmisladRIIDIGPGAGIF-GGEVLFNGSPREFLAK 573
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
19-213 |
1.51e-06 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 47.71 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMY---RRARLGISYLPQEASVFRKlSV 95
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEatrSRNRYSVAYAAQKPWLLNA-TV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 96 EDNIW-----------AIIEnrnTLSTTEKRDLLEsllgdLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEP 164
Cdd:cd03290 96 EENITfgspfnkqrykAVTD---ACSLQPDIDLLP-----FGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDP 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 609248018 165 FAGID-PIAVHEIK-NIIRILVDKNIGILITDHNVRdtlEITRRSYII--KDG 213
Cdd:cd03290 168 FSALDiHLSDHLMQeGILKFLQDDKRTLVLVTHKLQ---YLPHADWIIamKDG 217
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
19-226 |
1.64e-06 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 47.89 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVitnlpmyrrarlgiSYLPQEASVFRKLSVEDN 98
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV--------------SVIAISAGLSGQLTGIEN 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 99 IwaiieNRNTLSTTEKRDLLESLLGDL----GLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVH 174
Cdd:PRK13546 106 I-----EFKMLCMGFKRKEIKAMTPKIiefsELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQ 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 609248018 175 EIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKAELLK 226
Cdd:PRK13546 181 KCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
2-170 |
1.94e-06 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 48.04 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 2 STLQVSNLQKKYGKKQVLRG-IDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLPMYrrarlgi 80
Cdd:PRK10522 321 QTLELRNVTFAYQDNGFSVGpINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPE------- 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLPQEASVFRKLSVEDNiwaIIENRNTLSTTEkrdLLESLLGDLGLQEKRKQPAYT-----LSGGERRRTEIARSLAID 155
Cdd:PRK10522 394 DYRKLFSAVFTDFHLFDQ---LLGPEGKPANPA---LVEKWLERLKMAHKLELEDGRisnlkLSKGQKKRLALLLALAEE 467
|
170
....*....|....*
gi 609248018 156 PHFLLLDEPFAGIDP 170
Cdd:PRK10522 468 RDILLLDEWAADQDP 482
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1-229 |
6.44e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 46.55 E-value: 6.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIkpnggdILLNDHVITNLpmYRRARLGI 80
Cdd:PRK10938 1 MSSLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL------PLLSGERQSQF--SHITRLSF 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 81 SYLpqeasvfRKLsVEDnIWaiiENRNT--LSTTE----------------KRDLLESLLGDLGLQEKRKQPAYTLSGGE 142
Cdd:PRK10938 73 EQL-------QKL-VSD-EW---QRNNTdmLSPGEddtgrttaeiiqdevkDPARCEQLAQQFGITALLDRRFKYLSTGE 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 143 RRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIVAEGDKA 222
Cdd:PRK10938 141 TRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220
|
....*..
gi 609248018 223 ELLKNRL 229
Cdd:PRK10938 221 EILQQAL 227
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
17-195 |
1.25e-05 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 45.99 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 17 QVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGfiKPNGGDILlNDHVITNLPMYRRARLGIS--------------- 81
Cdd:PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFARISgyceqndihspqvtv 970
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 ----------YLPQEASVFRKLSVEDNIWAIIENRNTlsttekRDLLESLLGDLGLqekrkqpaytlSGGERRRTEIARS 151
Cdd:PLN03140 971 resliysaflRLPKEVSKEEKMMFVDEVMELVELDNL------KDAIVGLPGVTGL-----------STEQRKRLTIAVE 1033
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 609248018 152 LAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDH 195
Cdd:PLN03140 1034 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
14-227 |
1.29e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 45.88 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 14 GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKP-NGGDILLndhvitnlpmyrraRLGISYLPQEASVFRK 92
Cdd:PLN03130 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPrSDASVVI--------------RGTVAYVPQVSWIFNA 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 93 lSVEDNIW------AIIENRNTLSTTEKRDLleSLL--GDLGLQEKRkqpAYTLSGGERRRTEIARSLAIDPHFLLLDEP 164
Cdd:PLN03130 694 -TVRDNILfgspfdPERYERAIDVTALQHDL--DLLpgGDLTEIGER---GVNISGGQKQRVSMARAVYSNSDVYIFDDP 767
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 609248018 165 FAGIDP-IAVHEIKNIIRILVDKNIGILITdhNVRDTLEITRRSYIIKDGQIVAEGDKAELLKN 227
Cdd:PLN03130 768 LSALDAhVGRQVFDKCIKDELRGKTRVLVT--NQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
56-225 |
1.31e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 45.79 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 56 NGGDILLNDHVITNLPMyRRARLGISYLPQEASVFrKLSVEDNIWAIIEN--RNTLSTTEKRDLLESLLGDLGLQEKRKQ 133
Cdd:PTZ00265 1275 NSGKILLDGVDICDYNL-KDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDatREDVKRACKFAAIDEFIESLPNKYDTNV 1352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 134 PAY--TLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILIT-DHNVRdtlEITRRSYII 210
Cdd:PTZ00265 1353 GPYgkSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITiAHRIA---SIKRSDKIV 1429
|
170 180
....*....|....*....|..
gi 609248018 211 ------KDGQIV-AEGDKAELL 225
Cdd:PTZ00265 1430 vfnnpdRTGSFVqAHGTHEELL 1451
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1-225 |
2.29e-05 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 44.79 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 1 MSTLQVSNLQKKY----GKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPN----GGDILLNDHVITNL-P 71
Cdd:PRK15093 1 MPLLDIRNLTIEFktsdGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNwrvtADRMRFDDIDLLRLsP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 72 MYRRARLG--ISYLPQE--------ASVFRKL-------SVEDNIWAIIENRntlstteKRDLLEsLLGDLGLQEKR--- 131
Cdd:PRK15093 81 RERRKLVGhnVSMIFQEpqscldpsERVGRQLmqnipgwTYKGRWWQRFGWR-------KRRAIE-LLHRVGIKDHKdam 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 132 KQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAVHEIKNII-RILVDKNIGILITDHNVRDTLEITRRSYII 210
Cdd:PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLtRLNQNNNTTILLISHDLQMLSQWADKINVL 232
|
250
....*....|....*
gi 609248018 211 KDGQIVAEGDKAELL 225
Cdd:PRK15093 233 YCGQTVETAPSKELV 247
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
4-216 |
4.66e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 44.01 E-value: 4.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGKKQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGfIKPNG---GDILLNDHVITnlpmYRRAR--- 77
Cdd:NF040905 2 LEMRGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSG-VYPHGsyeGEILFDGEVCR----FKDIRdse 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 -LGISYLPQEASVFRKLSVEDNI--------WAIIENRNTLSTTEKrdllesLLGDLGLQEKRKQPAYTLSGGERRRTEI 148
Cdd:NF040905 77 aLGIVIIHQELALIPYLSIAENIflgnerakRGVIDWNETNRRARE------LLAKVGLDESPDTLVTDIGVGKQQLVEI 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 609248018 149 ARSLAIDPHFLLLDEPFAgidpiAVHE-----IKNIIRILVDKNIGILITDHNVRDTLEITRRSYIIKDGQIV 216
Cdd:NF040905 151 AKALSKDVKLLILDEPTA-----ALNEedsaaLLDLLLELKAQGITSIIISHKLNEIRRVADSITVLRDGRTI 218
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
36-163 |
5.55e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 42.55 E-value: 5.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 36 GPNGAGKTTCFYSIVGFIKPNGGDILLNDHVITNLpmyrrARLGISYLPQEASVFRKLSVEDNI--WAIIENRNTlstte 113
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI-----AKPYCTYIGHNLGLKLEMTVFENLkfWSEIYNSAE----- 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 609248018 114 krdLLESLLGDLGLQEKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:PRK13541 103 ---TLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
18-170 |
7.03e-05 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 43.26 E-value: 7.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 18 VLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGF--------IKPNGGDILLndhvitnLPM--Y------RRArlgIS 81
Cdd:COG4178 378 LLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLwpygsgriARPAGARVLF-------LPQrpYlplgtlREA---LL 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 82 YlPQEASVFrklsvedniwaiienrntlSTTEKRDLLESL-LGDLGLQEKRKQP-AYTLSGGERRRTEIARSLAIDPHFL 159
Cdd:COG4178 448 Y-PATAEAF-------------------SDAELREALEAVgLGHLAERLDEEADwDQVLSLGEQQRLAFARLLLHKPDWL 507
|
170
....*....|.
gi 609248018 160 LLDEPFAGIDP 170
Cdd:COG4178 508 FLDEATSALDE 518
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
19-163 |
7.15e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 43.34 E-value: 7.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 19 LRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLNDHVitnlpmyrrARLGISylpqeASVFRKLSVEDN 98
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA---------ALIAIS-----SGLNGQLTGIEN 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 609248018 99 iwaiIENRNTLSTTEKRDLLESLLGDLGLQEKRK---QPAYTLSGGERRRTEIARSLAIDPHFLLLDE 163
Cdd:PRK13545 106 ----IELKGLMMGLTKEKIKEIIPEIIEFADIGKfiyQPVKTYSSGMKSRLGFAISVHINPDILVIDE 169
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
138-211 |
7.52e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 41.96 E-value: 7.52e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 609248018 138 LSGGERRRTEIARSLAIDPH----FLLLDEPFAGIDPIAVHEIKNII-RILVDKNIGILITdHNvRDTLEITRRSYIIK 211
Cdd:cd03227 78 LSGGEKELSALALILALASLkprpLYILDEIDRGLDPRDGQALAEAIlEHLVKGAQVIVIT-HL-PELAELADKLIHIK 154
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
4-232 |
1.27e-04 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 42.20 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 4 LQVSNLQKKYGK--KQVLRGIDFSMHKGEVVGLLGPNGAGKTT---CFYSIVGFIKpngGDILLNDHVITNLPMYR-RAR 77
Cdd:cd03288 20 IKIHDLCVRYENnlKPVLKHVKAYIKPGQKVGICGRTGSGKSSlslAFFRMVDIFD---GKIVIDGIDISKLPLHTlRSR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 78 LGIsyLPQEASVF----------RKLSVEDNIWAIIEnrntlsTTEKRDLLESLLGdlGLQEKRKQPAYTLSGGERRRTE 147
Cdd:cd03288 97 LSI--ILQDPILFsgsirfnldpECKCTDDRLWEALE------IAQLKNMVKSLPG--GLDAVVTEGGENFSVGQRQLFC 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 148 IARSLAIDPHFLLLDEPFAGIDpIAVHEI--KNIIRILVDKNigILITDHNVRDTLEiTRRSYIIKDGQIVaEGDKAEll 225
Cdd:cd03288 167 LARAFVRKSSILIMDEATASID-MATENIlqKVVMTAFADRT--VVTIAHRVSTILD-ADLVLVLSRGILV-ECDTPE-- 239
|
....*..
gi 609248018 226 kNRLARE 232
Cdd:cd03288 240 -NLLAQE 245
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
133-219 |
3.48e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 41.60 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 133 QPAYTLSGGERRRTEIA---------RSLAIdphfllLDEPFAGIDpiaVHEIKNIIRIL---VDKNIGILITDHNvrdt 200
Cdd:PRK00349 826 QPATTLSGGEAQRVKLAkelskrstgKTLYI------LDEPTTGLH---FEDIRKLLEVLhrlVDKGNTVVVIEHN---- 892
|
90 100
....*....|....*....|....*...
gi 609248018 201 LEITRRS-YII--------KDGQIVAEG 219
Cdd:PRK00349 893 LDVIKTAdWIIdlgpeggdGGGEIVATG 920
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
133-219 |
3.53e-04 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 41.55 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 133 QPAYTLSGGERRRTEIARSLAI---DPHFLLLDEPFAGIDPiavHEIKNIIRI---LVDKNIGILITDHNvrdtLEITRR 206
Cdd:COG0178 822 QPATTLSGGEAQRVKLASELSKrstGKTLYILDEPTTGLHF---HDIRKLLEVlhrLVDKGNTVVVIEHN----LDVIKT 894
|
90 100
....*....|....*....|..
gi 609248018 207 S-YII--------KDGQIVAEG 219
Cdd:COG0178 895 AdWIIdlgpeggdGGGEIVAEG 916
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
129-173 |
4.09e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.00 E-value: 4.09e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 609248018 129 EKRKQPAYTLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDPIAV 173
Cdd:PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV 380
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
16-170 |
5.89e-04 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 39.44 E-value: 5.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 16 KQVLRGIDFSMHKGEVVGLLGPNGAGKTTCFYSIVGfIKPNG-GDIllndhvitnlpmYRRARLGISYLPQEASVfrkls 94
Cdd:cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPWGsGRI------------GMPEGEDLLFLPQRPYL----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 95 vedniwaiieNRNTLsttekrdllesllgdlglqekRKQPAY----TLSGGERRRTEIARSLAIDPHFLLLDEPFAGIDP 170
Cdd:cd03223 76 ----------PLGTL---------------------REQLIYpwddVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
122-197 |
1.34e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 39.81 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 122 LGDLGLQE-KRKQPAYTLSGGERRRTEIARSL---AIDPHFLLLDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHNV 197
Cdd:PRK00635 793 LCSLGLDYlPLGRPLSSLSGGEIQRLKLAYELlapSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM 872
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
36-170 |
2.44e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 37.97 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 36 GPNGAGKTT----CFYSIVGFIKPNGGDILLNDHVITnlpmyRRARLGISYLPQEASVFRKLSVEDNIwAIIENRNTLST 111
Cdd:cd03240 29 GQNGAGKTTiieaLKYALTGELPPNSKGGAHDPKLIR-----EGEVRAQVKLAFENANGKKYTITRSL-AILENVIFCHQ 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 609248018 112 TEKRDLLESLLGdlglqekrkqpayTLSGGERR------RTEIARSLAIDPHFLLLDEPFAGIDP 170
Cdd:cd03240 103 GESNWPLLDMRG-------------RCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDE 154
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
28-64 |
2.86e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 36.97 E-value: 2.86e-03
10 20 30
....*....|....*....|....*....|....*..
gi 609248018 28 KGEVVGLLGPNGAGKTTCFYSIVGFIKPNGGDILLND 64
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
67-219 |
3.80e-03 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 37.62 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 67 ITNLPMYRRARLGISYLPQEASVfRKLSVEDNIWAIIENRNTLST----TEKRDLLESLLGDLGLQEKRKQ--------- 133
Cdd:cd03270 51 VESLSAYARQFLGQMDKPDVDSI-EGLSPAIAIDQKTTSRNPRSTvgtvTEIYDYLRLLFARVGIRERLGFlvdvglgyl 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 609248018 134 ----PAYTLSGGERRRTEIARSLAIDPHFLL--LDEPFAGIDPIAVHEIKNIIRILVDKNIGILITDHnvrDTLEITRRS 207
Cdd:cd03270 130 tlsrSAPTLSGGEAQRIRLATQIGSGLTGVLyvLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH---DEDTIRAAD 206
|
170 180
....*....|....*....|
gi 609248018 208 YII--------KDGQIVAEG 219
Cdd:cd03270 207 HVIdigpgagvHGGEIVAQG 226
|
|
| |
