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Conserved domains on  [gi|608788293|ref|YP_009025126|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Egretta garzetta]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 596.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   3 WSPAVTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  83 MLALLLAITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIIL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 163 LSGNYTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 243 TLTTILFLNPSPLNLPPELFSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGIP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 608788293 323 PFL 325
Cdd:MTH00111 321 PQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 596.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   3 WSPAVTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  83 MLALLLAITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIIL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 163 LSGNYTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 243 TLTTILFLNPSPLNLPPELFSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGIP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 608788293 323 PFL 325
Cdd:MTH00111 321 PQL 323
NADHdh pfam00146
NADH dehydrogenase;
14-310 1.45e-110

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 323.27  E-value: 1.45e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   14 LSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLALLLAITIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   94 TPLPL--PFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGNYTLNT 171
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  172 LATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL- 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLg 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 608788293  251 -NPSPLNLPPELFsitLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:pfam00146 243 gWLGPFPLPGLLW---FLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-306 5.90e-99

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 294.73  E-value: 5.90e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   1 MTW--SPAVTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLF 78
Cdd:COG1005    1 MSLllAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  79 TITPMLALLLAITIWTPLPL--PFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAII 156
Cdd:COG1005   81 LLAPILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 157 LLSIILLSGNYTLNTLATTQE-PLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEY 235
Cdd:COG1005  161 LLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEY 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 608788293 236 ANIMLMNTLTTILFLNP--SPLNLPPELF---SITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:COG1005  241 ANMFLVSALATTLFLGGwlGPFPILPLGGlpgILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 596.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   3 WSPAVTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  83 MLALLLAITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIIL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 163 LSGNYTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 243 TLTTILFLNPSPLNLPPELFSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGIP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 608788293 323 PFL 325
Cdd:MTH00111 321 PQL 323
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 7-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 505.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   7 VTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLAL 86
Cdd:MTH00134   6 ITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLAL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  87 LLAITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGN 166
Cdd:MTH00134  86 TLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 167 YTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00134 166 FTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSA 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 608788293 247 ILFLNPSPLNLPPELFSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGIPPFL 325
Cdd:MTH00134 246 ILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 7-323 4.84e-180

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 500.30  E-value: 4.84e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   7 VTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLAL 86
Cdd:MTH00071   5 ISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMAL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  87 LLAITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGN 166
Cdd:MTH00071  85 TLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGG 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 167 YTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00071 165 FSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLST 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 608788293 247 ILFLNPSPLNLPPELFSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGIPP 323
Cdd:MTH00071 245 ILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 9-323 2.11e-179

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 498.38  E-value: 2.11e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   9 YLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLALLL 88
Cdd:MTH00104   2 FMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  89 AITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGNYT 168
Cdd:MTH00104  82 ALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFT 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 169 LNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTIL 248
Cdd:MTH00104 162 LSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTIL 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 608788293 249 FLNPSPLNLPPELFSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGIPP 323
Cdd:MTH00104 242 FLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPP 316
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 7-323 5.68e-145

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 410.84  E-value: 5.68e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   7 VTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLAL 86
Cdd:MTH00218   2 LLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILAL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  87 LLAITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGN 166
Cdd:MTH00218  82 TLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 167 YTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00218 162 FSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSV 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 608788293 247 ILFLNPSPLnlppelfSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGIPP 323
Cdd:MTH00218 242 ILFLGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 7-325 2.91e-139

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 397.04  E-value: 2.91e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   7 VTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLAL 86
Cdd:MTH00040   4 ILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  87 LLAITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGN 166
Cdd:MTH00040  84 FLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 167 YTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00040 164 FSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSV 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 247 ILFLN-PSPLNLPPELFSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGIPPFL 325
Cdd:MTH00040 244 ILFLGgGSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 10-320 1.08e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 329.01  E-value: 1.08e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  10 LIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLALLLA 89
Cdd:MTH00195   5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  90 ITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGNYTL 169
Cdd:MTH00195  85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 170 NTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILF 249
Cdd:MTH00195 165 TIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 608788293 250 LNPSPlnlppelfSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAG 320
Cdd:MTH00195 245 LGGGG--------TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
14-310 1.45e-110

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 323.27  E-value: 1.45e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   14 LSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLALLLAITIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   94 TPLPL--PFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGNYTLNT 171
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  172 LATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL- 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLg 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 608788293  251 -NPSPLNLPPELFsitLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:pfam00146 243 gWLGPFPLPGLLW---FLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 9-307 2.36e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 317.97  E-value: 2.36e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   9 YLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLALLL 88
Cdd:MTH00143   3 SLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  89 AITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGNYT 168
Cdd:MTH00143  83 ALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 169 LNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTIL 248
Cdd:MTH00143 163 FIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 249 FL-NPSPLNLppeLFSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLAL 307
Cdd:MTH00143 243 FFgGSSVLFL---LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 10-316 3.18e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 317.48  E-value: 3.18e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  10 LIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLALLLA 89
Cdd:MTH00193   5 LINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  90 ITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGNYTL 169
Cdd:MTH00193  85 LLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 170 NTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILF 249
Cdd:MTH00193 165 LDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMF 244

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 608788293 250 LNPSPLNLppeLFSItlatKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPI 316
Cdd:MTH00193 245 LGGDLLSL---LFYL----KLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 7-313 1.32e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 300.80  E-value: 1.32e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   7 VTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLAL 86
Cdd:MTH00225   1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  87 LLAITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGN 166
Cdd:MTH00225  81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 167 YTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00225 161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 608788293 247 ILFLNPSPLnlppeLFSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTS 313
Cdd:MTH00225 241 ILFFGGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 7-324 5.64e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 299.72  E-value: 5.64e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   7 VTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLAL 86
Cdd:MTH00054   2 GIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  87 LLAITIWTPLPL--PFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLS 164
Cdd:MTH00054  82 TLAFIAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 165 GNYTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTL 244
Cdd:MTH00054 162 GSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTF 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 245 TTILFLNPS-PLNLPPELFS--ITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGI 321
Cdd:MTH00054 242 GVILFLGGWlVISGPTSYFSnfVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNAL 321


                 ...
gi 608788293 322 PPF 324
Cdd:MTH00054 322 PPF 324
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-306 5.90e-99

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 294.73  E-value: 5.90e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   1 MTW--SPAVTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLF 78
Cdd:COG1005    1 MSLllAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  79 TITPMLALLLAITIWTPLPL--PFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAII 156
Cdd:COG1005   81 LLAPILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 157 LLSIILLSGNYTLNTLATTQE-PLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEY 235
Cdd:COG1005  161 LLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEY 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 608788293 236 ANIMLMNTLTTILFLNP--SPLNLPPELF---SITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:COG1005  241 ANMFLVSALATTLFLGGwlGPFPILPLGGlpgILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 7-324 4.10e-98

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 292.41  E-value: 4.10e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   7 VTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLAL 86
Cdd:MTH00216   6 IFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSF 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  87 LLAITIWTPLPLP--FPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLS 164
Cdd:MTH00216  86 TLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 165 GNYTLNTLATTQEP-LYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNT 243
Cdd:MTH00216 166 GSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSC 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 244 LTTILFLNpSPLNLPPELF--SITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPISYAGI 321
Cdd:MTH00216 246 LTTILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGP 324


                 ...
gi 608788293 322 PPF 324
Cdd:MTH00216 325 PPI 327
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-310 1.68e-95

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 285.55  E-value: 1.68e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   1 MTWSPAVTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTI 80
Cdd:PRK06076   4 FGPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  81 TPMLALLLAITIWTPLPL--PFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:PRK06076  84 APVIAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 159 SIILLSGNYTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:PRK06076 164 AVVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINM 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 608788293 239 MLMNTLTTILFLN------PSPLNLPPelfSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:PRK06076 244 ILVSALITTLFLGgwlppfPLGGGIPG---AIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-323 8.33e-87

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 264.19  E-value: 8.33e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   1 MTWSPAVTYLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTI 80
Cdd:MTH00029   1 MTIYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  81 TPMLALLLAITIWTPLPLP--FPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:MTH00029  81 APIISFTLAILAWAIVTMDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIII 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 159 SIILLSGNYTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:MTH00029 161 SVILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 239 MLMNTLTTILFLNP--SPLNLPPELFSITLATKVLLLSSG--------------FLWIRASYPRFRYDQLMHLLWKNFLP 302
Cdd:MTH00029 241 ILMSCMMTIFFLGGwlSPLDGIPTPPEAFSIFEQIASSKSsfwfftkssifilfFIWSRASFPRIRYDQLMKLLWKTYLP 320

                        330       340
                 ....*....|....*....|.
gi 608788293 303 LTLALCLWHTSMPISYAGIPP 323
Cdd:MTH00029 321 LSLGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 12-309 1.59e-80

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 247.00  E-value: 1.59e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  12 MSLSYAIPI-------LLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPML 84
Cdd:MTH00010   1 MNISFFISIllsyvmaLLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  85 ALLLAITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLS 164
Cdd:MTH00010  81 SLILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 165 GNYTLNTLATTQEPLYLIFSSwPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTL 244
Cdd:MTH00010 161 QTFSFSKIIMSQYSWILLMII-PLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLF 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 608788293 245 TTILFLNPSPLNLPPELFSItlaTKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCL 309
Cdd:MTH00010 240 TSVFFTSFIPSIFISDLMLI---LKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 18-305 3.14e-60

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 194.35  E-value: 3.14e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  18 IPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLALLLAITIWTPLP 97
Cdd:MTH00090   7 IFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLP 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  98 LPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGNYTLNTlattqe 177
Cdd:MTH00090  87 YFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS------ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 178 plYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNPSPLNL 257
Cdd:MTH00090 161 --SFSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLML 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 608788293 258 ppelfsitlatkvLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTL 305
Cdd:MTH00090 239 -------------FLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 14-313 4.52e-47

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 162.43  E-value: 4.52e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  14 LSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLA---LLLAI 90
Cdd:CHL00032  34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAvisILLSY 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  91 TIwTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGnyTLN 170
Cdd:CHL00032 114 LV-IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN--SLS 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 171 TLATTQEPLYLIFSSWPL------AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTL 244
Cdd:CHL00032 191 TVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLF 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 245 TTILFLNPSPLNLP----PELFSITLATKVLLLSSG----------FLWI----RASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:CHL00032 271 VTVLYLGGWNLSIPyifiPELFEINKTGGVFGTTIGifitlaktylFLFIsittRWTLPRLRMDQLLNLGWKFLLPISLG 350


                 ....*..
gi 608788293 307 LCLWHTS 313
Cdd:CHL00032 351 NLLLTTS 357
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 9-305 3.09e-45

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 155.47  E-value: 3.09e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293   9 YLIMSLSYAIPILLAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPLLFTITPMLALLL 88
Cdd:MTH00058   3 GLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  89 AITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLSGNYT 168
Cdd:MTH00058  83 VVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 169 LNTLATTQEPLYLIFssWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTIL 248
Cdd:MTH00058 163 LVDFYYSGWLSVLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 608788293 249 FLNPSplnlppeLFSITLATKVLLlssgFLWIRASYPRFRYDQLMHLLWKNFLPLTL 305
Cdd:MTH00058 241 FFGGG-------FVSIMLLFHLLF----FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
11-310 1.76e-29

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 114.12  E-value: 1.76e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  11 IMSLSYAIPILLAVAFLTL----VERKVLSYMQSRKGPnivgpfGLLQPVADGVKLFIKEPIRPSTSSPLlFTITPMLAL 86
Cdd:COG0650    1 MMLILLALLQLLLALLLAPlllgIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293  87 --LLAITIWTPLPLPFPLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIILLS 164
Cdd:COG0650   74 aaMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788293 165 GNYTLNTLATTQE---PLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 241
Cdd:COG0650  154 GSTSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 608788293 242 NTLTTILFLnPSPLNLPPELFSITLATKVLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:COG0650  234 LSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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