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Conserved domains on  [gi|608788034|ref|YP_009024884|]
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ATP synthase F0 subunit 6 (mitochondrion) [Allochrocebus lhoesti]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009564)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.48e-118

ATP synthase F0 subunit 6; Validated


:

Pssm-ID: 177163  Cd Length: 226  Bit Score: 336.15  E-value: 2.48e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   1 MNENLFTPFTTPTILNQPATIPIILFPMLLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  81 MTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 608788034 161 TANITAGHLLMHLIGSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNNT 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.48e-118

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 336.15  E-value: 2.48e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   1 MNENLFTPFTTPTILNQPATIPIILFPMLLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  81 MTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 608788034 161 TANITAGHLLMHLIGSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNNT 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 19-225 5.28e-49

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 160.06  E-value: 5.28e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   19 ATIPIILFPMLLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQL 98
Cdd:TIGR01131  21 ILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTPTSHL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   99 SMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRLTANITAGHLLMHLIGSTV 178
Cdd:TIGR01131 101 SFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGLL 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 608788034  179 LALLTINLpvALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNN 225
Cdd:TIGR01131 181 FSLMSSAI--FALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 7.47e-40

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 134.06  E-value: 7.47e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  65 GQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLI 144
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 608788034 145 ETTSLLIQPMALAVRLTANITAGHLLMHLIGSTVLALLTINLPVAlltYTLLMLLTILEIAVALIQAYVFTLLVSLYL 222
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLP---LLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
19-223 2.47e-33

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 119.13  E-value: 2.47e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   19 ATIPIILFPMLLIPTSKHLINNRLITIQHNLIQPILKQMM-ITHNAKGQTWSLMLVSLIIFIAMTNLLGLL---PHSFTP 94
Cdd:pfam00119   7 VALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKdNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   95 TTQLSMNLAMAIPLWAGTVITGLRFK-TKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRLTANITAGHLLMHL 173
Cdd:pfam00119  87 TADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLL 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 608788034  174 IGSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLH 223
Cdd:pfam00119 167 LAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 64-222 4.39e-23

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 92.44  E-value: 4.39e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  64 KGQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFK-TKNSLAHLLPQGTPtLLIPMLV 142
Cdd:COG0356   53 KGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLML 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034 143 LIETTSLLIQPMALAVRLTANITAGHLLMHLIgstvlALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYL 222
Cdd:COG0356  132 PIEIISELARPLSLSLRLFGNMFAGHIILLLL-----AGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYI 206
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.48e-118

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 336.15  E-value: 2.48e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   1 MNENLFTPFTTPTILNQPATIPIILFPMLLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFIA 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  81 MTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRL 160
Cdd:MTH00101  81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 608788034 161 TANITAGHLLMHLIGSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNNT 226
Cdd:MTH00101 161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-226 4.08e-78

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 233.95  E-value: 4.08e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   1 MNENLFTPFTTPTILNQPATIPIILFPMLLIPTSKH-LINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFI 79
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNrLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  80 AMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVR 159
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 608788034 160 LTANITAGHLLMHLIGSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNNT 226
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-226 9.78e-70

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 212.90  E-value: 9.78e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   1 MNENLFTPFTTPTILNQPATIPIILFPMLLIPT-SKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFI 79
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTpTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  80 AMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVR 159
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 608788034 160 LTANITAGHLLMHLIGSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNNT 226
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-225 1.11e-67

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 207.42  E-value: 1.11e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   1 MNENLFTPFTTPTILNQPATIPIILFPMLLIPT-SKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFI 79
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTpTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  80 AMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVR 159
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 608788034 160 LTANITAGHLLMHLIGSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNN 225
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-226 2.00e-63

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 196.71  E-value: 2.00e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   1 MNENLFTPFTTPTILNQPATIPIILFPMLLIPTSKH-LINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFI 79
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNrWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  80 AMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVR 159
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 608788034 160 LTANITAGHLLMHLIGSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNNT 226
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-221 8.36e-51

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 164.57  E-value: 8.36e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   1 MNENLFTPFTTPTILNQPATIPIILFPMLLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFIA 80
Cdd:MTH00157   1 MMTNLFSIFDPSTSFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  81 MTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRL 160
Cdd:MTH00157  81 FNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRL 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 608788034 161 TANITAGHLLMHLIGSTVLALLTINLPvalLTYTLLMLLTILEIAVALIQAYVFTLLVSLY 221
Cdd:MTH00157 161 AANMIAGHLLLTLLGNTGPSLSSMILS---ILILIQILLLILESAVAIIQSYVFSVLSTLY 218
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 19-225 5.28e-49

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 160.06  E-value: 5.28e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   19 ATIPIILFPMLLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQL 98
Cdd:TIGR01131  21 ILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTPTSHL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   99 SMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRLTANITAGHLLMHLIGSTV 178
Cdd:TIGR01131 101 SFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGLL 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 608788034  179 LALLTINLpvALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNN 225
Cdd:TIGR01131 181 FSLMSSAI--FALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-225 1.37e-43

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 146.27  E-value: 1.37e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   1 MNENLFTPFTTPTILNQPATIPIILFPM--LLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIF 78
Cdd:MTH00035   3 INNSIFGQFSPDTILFIPLTLLSSVIALswLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  79 IAMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAV 158
Cdd:MTH00035  83 ILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGL 162

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 608788034 159 RLTANITAGHLLMHLIgSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNN 225
Cdd:MTH00035 163 RLAANLTAGHLLIFLL-STAIWELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQN 228
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 25-221 7.32e-41

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 139.23  E-value: 7.32e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  25 LFPMLLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQLSMNLAM 104
Cdd:MTH00173  28 LMSLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSL 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034 105 AIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRLTANITAGHLLMHLIGSTVLALL-T 183
Cdd:MTH00173 108 ALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIGNYLSSSLfS 187

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 608788034 184 INLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLY 221
Cdd:MTH00173 188 SSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLY 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 7.47e-40

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 134.06  E-value: 7.47e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  65 GQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLI 144
Cdd:cd00310    1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 608788034 145 ETTSLLIQPMALAVRLTANITAGHLLMHLIGSTVLALLTINLPVAlltYTLLMLLTILEIAVALIQAYVFTLLVSLYL 222
Cdd:cd00310   81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLP---LLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 1.31e-39

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 135.93  E-value: 1.31e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   1 MNENLFTPFTTPTILNQPATIPI---ILFPMLLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLII 77
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISLSwitLLLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  78 FIAMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALA 157
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 608788034 158 VRLTANITAGHLLMHLIGSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHNNT 226
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 28-221 1.70e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 120.22  E-value: 1.70e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  28 MLLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQLSMNLAMAIP 107
Cdd:MTH00005  33 ILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLP 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034 108 LWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRLTANITAGHLLMHLIGSTVLALLTINLP 187
Cdd:MTH00005 113 LWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIGIYAASALFSSIS 192

                        170       180       190
                 ....*....|....*....|....*....|....
gi 608788034 188 VALLTYTLLMLLTILEIAVALIQAYVFTLLVSLY 221
Cdd:MTH00005 193 STILLILTQMGYILFEVGICLIQAYIFCLLLSLY 226
ATP-synt_A pfam00119
ATP synthase A chain;
19-223 2.47e-33

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 119.13  E-value: 2.47e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   19 ATIPIILFPMLLIPTSKHLINNRLITIQHNLIQPILKQMM-ITHNAKGQTWSLMLVSLIIFIAMTNLLGLL---PHSFTP 94
Cdd:pfam00119   7 VALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKdNIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034   95 TTQLSMNLAMAIPLWAGTVITGLRFK-TKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRLTANITAGHLLMHL 173
Cdd:pfam00119  87 TADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLL 166

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 608788034  174 IGSTVLALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLH 223
Cdd:pfam00119 167 LAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 23-222 5.39e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 108.59  E-value: 5.39e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  23 IILFPMLLIPTSKHLINNRLITIQHNLIQPILKQMMITHNAKGQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQLSMNL 102
Cdd:MTH00172  26 LVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFFFIVFLNLLGLFPYVFTPTTHIVVTL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034 103 AMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRLTANITAGHLLMHLIGSTVLALL 182
Cdd:MTH00172 106 GLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFAILAGFGFNML 185

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 608788034 183 TINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYL 222
Cdd:MTH00172 186 CASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYL 225
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 23-222 2.35e-26

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 102.01  E-value: 2.35e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  23 IILFPMLLIptSKHLINNRLITIQHnLIQPILKQMMITH-NAKGQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQLSMN 101
Cdd:MTH00175  39 VIIFWLLLK--GDKLIPNRWQSIME-LIYLNIRSVVHDNlGKSGQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIIT 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034 102 LAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIETTSLLIQPMALAVRLTANITAGHLLMHLIGSTVLAL 181
Cdd:MTH00175 116 FGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHLLFAILSGFAFNM 195

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 608788034 182 LTINLPV-ALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYL 222
Cdd:MTH00175 196 LSNGLIIlSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYL 237
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 64-222 4.39e-23

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 92.44  E-value: 4.39e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  64 KGQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFK-TKNSLAHLLPQGTPtLLIPMLV 142
Cdd:COG0356   53 KGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKgLGGYLKHLFFPPFP-WLAPLML 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034 143 LIETTSLLIQPMALAVRLTANITAGHLLMHLIgstvlALLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYL 222
Cdd:COG0356  132 PIEIISELARPLSLSLRLFGNMFAGHIILLLL-----AGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYI 206
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 64-224 1.16e-19

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 84.22  E-value: 1.16e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  64 KGQTWSLMLVSLIIFIAMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVL 143
Cdd:MTH00174  86 KGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTI 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034 144 IETTSLLIQPMALAVRLTANITAGHLLMHLIGSTVLALLTINLPV-ALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYL 222
Cdd:MTH00174 166 IETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIgSFVPFAILIFVTILEMAVAIIQAYVFTLLTIVYL 245


                 ..
gi 608788034 223 HN 224
Cdd:MTH00174 246 RD 247
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 64-223 1.20e-18

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 80.99  E-value: 1.20e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  64 KGQTWSLMLVSLIIFIAMTNLLGLLP-HSFTPTTQLSMNLAMAIPLWAGTVITGLRFK-TKNSLAHLLPQGTPtLLIPml 141
Cdd:PRK05815  68 KGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKKgLGGYLKEFYLQPHP-LLLP-- 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034 142 vlIETTSLLIQPMALAVRLTANITAGHLLMHLIGStvlaLLTINLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLY 221
Cdd:PRK05815 145 --IEIISEFSRPISLSLRLFGNMLAGELILALIAL----LGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVY 218


                 ..
gi 608788034 222 LH 223
Cdd:PRK05815 219 IS 220
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 72-222 8.45e-15

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 72.08  E-value: 8.45e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  72 LVSLIIFIAMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLR-FKTKNSLAHLlPQGTPTLLIPMLVLIETTSLL 150
Cdd:PRK13419 174 LLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKaHGIKGYLAHL-TGGTHWSLWIIMIPIEFIGLF 252

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 608788034 151 IQPMALAVRLTANITAGHLLmhligstVLALLTINLPV------ALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYL 222
Cdd:PRK13419 253 TKPFALTVRLFANMTAGHIV-------ILSLIFISFILksyivaVAVSVPFAIFIYLLELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 73-224 6.10e-14

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 67.70  E-value: 6.10e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  73 VSLIIFIAMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRFKTKnsLAHLLPQGTPTLLIPM-LVLIETTSLLI 151
Cdd:MTH00087  56 FFTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEK--FSVYLSKGSDSFLKTFsMLFVEIVSELS 133

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 608788034 152 QPMALAVRLTANITAGHLLMHLIGStvlalltinlpVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYLHN 224
Cdd:MTH00087 134 RPLALTLRLTVNLMVGHLISSLLNF-----------LGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYLNE 195
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 93-222 2.71e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 50.27  E-value: 2.71e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  93 TPTTQLSMNLAMAIPLWAGTVITGLRFKTKNSLAHLLPQGTPTLLIPMLVLIE-TTSLLIQPMALAVRLTANITAGHLLm 171
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHVI- 295

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 608788034 172 hligstVLALLTI-----NLPVALLTYTLLMLLTILEIAVALIQAYVFTLLVSLYL 222
Cdd:PRK13417 296 ------ILALMGFifqfqSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 74-222 5.25e-04

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 39.73  E-value: 5.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  74 SLIIFIAMTNLLGLLPHSFTPTTQLSMNLAMAIPL-----WAGTVITGLRfktkNSLAHLLpqgTPT-LLIPMLVLIETT 147
Cdd:PRK13420  80 TLWIFILVANLIGLIPGFHSPTADLSVTAALALLVffsvhWFGIRAEGLR----EYLKHYL---SPSpFLLPFHLISEIT 152

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 608788034 148 SLLiqpmALAVRLTANITAghllMHLIGSTVLALLTINLPVAlltytllmlLTILEIAVALIQAYVFTLLVSLYL 222
Cdd:PRK13420 153 RTL----ALAVRLFGNIMS----LELAALLVLLVAGFLVPVP---------ILMLHIIEALVQAYIFGMLALIYI 210
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 74-217 8.38e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 36.21  E-value: 8.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788034  74 SLIIFIAMTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVITGLRfkTKNSLAHLLPQGTPTLLIPMLVLIETtslLIQP 153
Cdd:PRK13421  83 TLFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGVR--ARGVRGYLATFAEPTWVMIPLNLVEQ---LTRT 157

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 608788034 154 MALAVRLTANITAGHLLMHLIGStvLALLTINLPValltytllmllTILEIAVALIQAYVFTLL 217
Cdd:PRK13421 158 FSLIVRLFGNVMSGVFVIGIVLS--LAGLLVPIPL-----------MALDLLTGAVQAYIFAVL 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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