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Conserved domains on  [gi|608788006|ref|YP_009024860|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Niviventer confucianus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.42e-69

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 203.25  E-value: 2.42e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 608788006  81 TTNTPMMITVAFILITILALGLSYEWSQKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.42e-69

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 203.25  E-value: 2.42e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 608788006  81 TTNTPMMITVAFILITILALGLSYEWSQKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 3.99e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 103.27  E-value: 3.99e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   18 VLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNTPMMITV-AFILIT 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVeMLIFIA 78

                          90
                  ....*....|....*.
gi 608788006   97 ILALGLSYEWSQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-113 4.35e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 83.63  E-value: 4.35e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   3 LFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTT 82
Cdd:COG0838    8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFR 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 608788006  83 NTPMMITVA-FILITILALGLSYEWSQKGLEW 113
Cdd:COG0838   86 ELGWFGLIEmLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 2.42e-69

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 203.25  E-value: 2.42e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 608788006  81 TTNTPMMITVAFILITILALGLSYEWSQKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 3.30e-49

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 152.38  E-value: 3.30e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFI-IITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00136   1 MNLITtILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 608788006  80 QTTNTPMMITVAFILITILALGLSYEWSQKGLEWTE 115
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 3.76e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 139.36  E-value: 3.76e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   3 LFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTT 82
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 608788006  83 NTPMMITVAFILITILALGLSYEWSQKGLEWTE 115
Cdd:MTH00069  82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 6.21e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 136.16  E-value: 6.21e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 608788006  81 TTNTPMMITVAFILITILALGLSYEWSQKGLEWT 114
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 1.27e-37

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 122.78  E-value: 1.27e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 608788006  81 TTNTPMMITVAFILITILALGLSYEWSQKGLEWTE 115
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-113 2.41e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 111.91  E-value: 2.41e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFII-ITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00203   1 MNLIMLfFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 608788006  80 QTTNTPMMItvAFILITILALGLSYEWSQKGLEW 113
Cdd:MTH00203  81 QLSSLSLLL--AFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 3.99e-30

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 103.27  E-value: 3.99e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   18 VLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNTPMMITV-AFILIT 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVeMLIFIA 78

                          90
                  ....*....|....*.
gi 608788006   97 ILALGLSYEWSQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 7.54e-30

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 103.40  E-value: 7.54e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLY-SEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 608788006  80 QTTNTPMMITVAFILITILALGLSYEWSQKGLEWTE 115
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 2.47e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 91.98  E-value: 2.47e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLYS-EKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAI 79
Cdd:MTH00202   2 LLILFMSILSILISSLLFLVSWMLSFRSLMDrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVL 81

                         90       100       110
                 ....*....|....*....|....*....|....
gi 608788006  80 QTTNTPMMITVAFILITILALGLSYEWSQKGLEW 113
Cdd:MTH00202  82 KSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-113 7.09e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 90.61  E-value: 7.09e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   2 NLFIIITINISLSLTLVLIAFWLPQMNLYS-EKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDrEKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 608788006  81 TTNTPMMITVAFILITILALGLSYEWSQKGLEW 113
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-114 1.30e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 87.61  E-value: 1.30e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006  32 EKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNTPMMITVAFILITILALGLSYEWSQKGL 111
Cdd:MTH00012  34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                 ...
gi 608788006 112 EWT 114
Cdd:MTH00012 114 DWS 116
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-113 4.35e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 83.63  E-value: 4.35e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   3 LFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTT 82
Cdd:COG0838    8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFR 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 608788006  83 NTPMMITVA-FILITILALGLSYEWSQKGLEW 113
Cdd:COG0838   86 ELGWFGLIEmLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-113 1.53e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 79.75  E-value: 1.53e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQ 80
Cdd:MTH00055   6 LGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVV 83

                         90       100       110
                 ....*....|....*....|....*....|....
gi 608788006  81 TTNTPMM-ITVAFILITILALGLSYEWSQKGLEW 113
Cdd:MTH00055  84 YNQIGLFgFWVMYLFLIILTIGLIYEWVKGGLEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 3-114 1.57e-19

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 77.21  E-value: 1.57e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   3 LFIIITIniSLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTT 82
Cdd:PRK06602  13 IFLIVAI--GLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREI 90

                         90       100       110
                 ....*....|....*....|....*....|..
gi 608788006  83 NTPMMITvAFILITILALGLSYEWSQKGLEWT 114
Cdd:PRK06602  91 GWLGFVE-AMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 2.72e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 76.25  E-value: 2.72e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQ 80
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                         90       100       110
                 ....*....|....*....|....*....|....
gi 608788006  81 TTNT-PMMITVAFILITILALGLSYEWSQKGLEW 113
Cdd:MTH00018  79 YNQIaPFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 5-113 6.57e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 68.04  E-value: 6.57e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   5 IIITINISLSLTLVLIAFWLPQmnlySEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTTNT 84
Cdd:MTH00030  19 ILLLVSISFTLGNSRIGLTKPD----SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNL 94

                         90       100
                 ....*....|....*....|....*....
gi 608788006  85 pMMITVAFILITILALGLSYEWSQKGLEW 113
Cdd:MTH00030  95 -FSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
1-113 1.78e-10

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 53.98  E-value: 1.78e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPlpWAIQ 80
Cdd:PRK07756  10 MIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVA 87

                         90       100       110
                 ....*....|....*....|....*....|....
gi 608788006  81 TTNTPMMITVA-FILITILALGLSYEWSQKGLEW 113
Cdd:PRK07756  88 YDKLGLFALIEmLIFVVMLLVGLAYAWKKKVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 5.47e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 52.37  E-value: 5.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006  33 KANPYECGFDPTSSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWAIQTTNTPMMITVAFIL-ITILALGLSYEWSQK 109
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVFGLVEMALfMLTVFVAYAYVWRRG 114


                 ....*
gi 608788006 110 GLEWT 114
Cdd:PRK07928 115 GLEWD 119
ndhC CHL00022
NADH dehydrogenase subunit 3
 4-114 8.46e-09

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 49.60  E-value: 8.46e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006   4 FIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTN 83
Cdd:CHL00022  11 WAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDV 88

                         90       100       110
                 ....*....|....*....|....*....|..
gi 608788006  84 TPMMITV-AFILITILALGLSYEWSQKGLEWT 114
Cdd:CHL00022  89 LGVSAFIeALIFVLILIVGLVYAWRKGALEWS 120
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 7.63e-07

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 44.66  E-value: 7.63e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 608788006  33 KANPYECGFDPTSSARlPFSMKFFLVAITFLLFDLEIALLlpLPWAIQTTNTPMMITVAFIL-ITILALGLSYEWSQKGL 111
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFGLIEMLLfIVLLTIGFIYAWKKGAL 123


                 ..
gi 608788006 112 EW 113
Cdd:PRK08489 124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-73 2.56e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.26  E-value: 2.56e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 608788006   1 MNLFIIITINISLSLTLVLIAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLL 73
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-76 1.16e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 35.64  E-value: 1.16e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 608788006  36 PYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  40 SFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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