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Conserved domains on  [gi|60858243|gb|AAX37206|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Progne tapera]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.06e-158

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 446.58  E-value: 4.06e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    1 MNPQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTCMAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLITTWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  241 NAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTHKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 60858243  321 SNPLIAISAVVSIMLLPIAPMISTIL 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.06e-158

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 446.58  E-value: 4.06e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    1 MNPQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTCMAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLITTWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  241 NAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTHKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 60858243  321 SNPLIAISAVVSIMLLPIAPMISTIL 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-270 4.10e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.50  E-value: 4.10e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   8 VFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALILF-SSMTNAwSTGQWD 85
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLN 184

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  86 ITQMTHPTS------------CLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMK----FPPITLLFMSYHSL 149
Cdd:COG1007 185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGL 264

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243 150 NP---NLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAI-ILSFSPK-LTLLNFYL--YALMTSTIFLTL--- 219
Cdd:COG1007 265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlll 344

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|...
gi 60858243 220 --NTTKALKLSTLITTWTKTPSLNAMLLLTLLSLAGLPPMTGFLPKWLIIQEL 270
Cdd:COG1007 345 srKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.24e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    23 SNHWITAWAGLEINTLSILPLI-SKSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQWDITQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    91 HPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLL-STVMKFPPITLLFMS--YHSLNP---NLLTCMAIMSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSllYLPSSPfiqQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   165 GGWMGLNQTQIRKILAFSSISHLGWMAIILS----FSPKLTLLNFYLYALMTSTIFL-----TLNTTKALKLSTLITTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 60858243   236 KTPSLNAMLLLTLLSLAGLPPMTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 2.10e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 2.10e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    14 LLGTTITITSNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQWDITQMTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    93 TSCLILT------------SAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMK---FPPITLLFMS----YHSLNPNL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   154 LTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLN--FYL--YALMTSTIFLTL------NTTK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 60858243   224 ALKLSTLITTWTKTPSLNAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 4.06e-158

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 446.58  E-value: 4.06e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    1 MNPQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTCMAIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLITTWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  241 NAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTHKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 60858243  321 SNPLIAISAVVSIMLLPIAPMISTIL 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.08e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 386.47  E-value: 2.08e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    1 MNPQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLfMSYHSLNPNLLTCMAIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALI-LQIAPTNPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLITTWTKTPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  241 NAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTHKS 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 60858243  321 SNPL-IAISAVVSIMLLPIAPMISTIL 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 5.09e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 375.41  E-value: 5.09e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    1 MNPQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWS 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTCMAIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLITTWTKTPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  241 NAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTHKS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 60858243  321 SNPLIAISAVVSIMLLPIAPMISTIL 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 7.20e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 329.11  E-value: 7.20e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    1 MNPQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWS 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTCMAIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLITTWTKTPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  241 NAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVISLLSLLGLFFYLRLAYCATITLPPhTTNHMK-QWH-TH 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....*..
gi 60858243  319 KSSNPLIAISAVVSIMLLPIAPMISTI 345
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.77e-98

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 294.95  E-value: 1.77e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    1 MNPQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWS 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTCMAIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLITTWTKTPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  241 NAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTHKS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 60858243  321 SNPLIAISAVVSIMLLPIAPMISTIL 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-267 2.49e-75

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 235.98  E-value: 2.49e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    1 MNPQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWS 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   81 TGQWDITQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTCMAIM 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLITTWTKTPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260
                 ....*....|....*....|....*..
gi 60858243  241 NAMLLLTLLSLAGLPPMTGFLPKWLII 267
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 9.89e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 176.94  E-value: 9.89e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    1 MNPQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWS 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   81 TGqwditqMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLfmsYHSLNPNLLTCMAIM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  161 SAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLITTWTKTPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  241 NAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVISLLSLLGLFFYLRLAYCAtITLPPHTTNHMKQWHTHKS 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|....*
gi 60858243  321 SNPLIaISAVVSIMLLPIAPMISTI 345
Cdd:MTH00160 312 SLILN-FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 1.28e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 155.81  E-value: 1.28e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    5 AKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   85 DITqmthptscLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTC-MAIMSAA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCvISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  164 LGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLitTWTKTPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGL 234

                        250       260       270
                 ....*....|....*....|....*....|...
gi 60858243  244 LLLTLLSLAG-LPPMTGFLPKWLIIQELTKQDM 275
Cdd:MTH00144 235 SIISLLLSLGgLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 9.01e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 153.40  E-value: 9.01e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    7 LVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSsMTNAWSTgqwdI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG-MTMMWSF----P 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   87 TQMTHPTScLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTCMAIMSAALGG 166
Cdd:MTH00011  84 SLLKNITA-LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  167 WMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTLITTWTKTPSLNAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260
                 ....*....|....*....|....*....
gi 60858243  247 TLLSLAGLPPMTGFLPKWLIIQELTKQDM 275
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 1.08e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 129.41  E-value: 1.08e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    8 VFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   88 qMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLfmSYHSLNPNLLTCMAIMSAALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  168 MGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTLNTTKALKLSTlITTWTKTPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260
                 ....*....|....*....|....
gi 60858243  248 LLSLAG-LPPMTGFLPKWLIIQEL 270
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSL 255
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 1.06e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.80  E-value: 1.06e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   13 LLLGTTITITSNHWITAWAGLEINTLSILPLI-SKSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQWDI----- 86
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   87 --------TQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSyhSLNPNLLTCMA 158
Cdd:MTH00196  82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  159 IMSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSF----SPKLTLLNFYLYALMTSTIF---LTLNTTKAL--KLST 229
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFsiiLALNVYKNLiiEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 60858243  230 LIttwTKTPSLNAMLLLTLLSLAGLPPMTGFLPKWLII 267
Cdd:MTH00196 240 LS---RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-270 4.10e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.50  E-value: 4.10e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   8 VFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALILF-SSMTNAwSTGQWD 85
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLN 184

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  86 ITQMTHPTS------------CLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMK----FPPITLLFMSYHSL 149
Cdd:COG1007 185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGL 264

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243 150 NP---NLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAI-ILSFSPK-LTLLNFYL--YALMTSTIFLTL--- 219
Cdd:COG1007 265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVIlll 344

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|...
gi 60858243 220 --NTTKALKLSTLITTWTKTPSLNAMLLLTLLSLAGLPPMTGFLPKWLIIQEL 270
Cdd:COG1007 345 srKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAA 397
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 8.24e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    23 SNHWITAWAGLEINTLSILPLI-SKSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQWDITQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    91 HPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLL-STVMKFPPITLLFMS--YHSLNP---NLLTCMAIMSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSllYLPSSPfiqQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   165 GGWMGLNQTQIRKILAFSSISHLGWMAIILS----FSPKLTLLNFYLYALMTSTIFL-----TLNTTKALKLSTLITTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 60858243   236 KTPSLNAMLLLTLLSLAGLPPMTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 1.15e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 98.17  E-value: 1.15e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    8 VFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   87 ----TQMTHPTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLfMSYHSLNPNLLTCmAIMSA 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSIL-VQIGPVTNVVLIC-AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  163 ALGGWMGLNQTQIRKILAFSSISHLG---WMAIILSF-SPKLTLLNFYLYALMTSTIF---LTLNTTKALkLSTLITTWT 235
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFeSIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSR 337

                        250       260       270
                 ....*....|....*....|....*....|..
gi 60858243  236 KTPSLNAMLLLTLLSLAGLPPMTGFLPKWLII 267
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 2.10e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 2.10e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    14 LLGTTITITSNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQWDITQMTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    93 TSCLILT------------SAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMK---FPPITLLFMS----YHSLNPNL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   154 LTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLN--FYL--YALMTSTIFLTL------NTTK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 60858243   224 ALKLSTLITTWTKTPSLNAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDM 275
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-281 1.88e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 91.81  E-value: 1.88e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    8 VFVLSLL--LGTTITITSNHWITAWAGLEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQW 84
Cdd:PRK05777 105 FYLLVLFalLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSL 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   85 DITQMTHPTS------------CLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMK---FPPIT-LLFMSYHS 148
Cdd:PRK05777 185 SFAGIAKALAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGG 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  149 LNP---NLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTL--LNFYL--YALMT--STIFLTL 219
Cdd:PRK05777 265 LSEdwqQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTlgAFGVISL 344

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 60858243  220 NTTKALKLSTlITTWT----KTPSLNAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATV 281
Cdd:PRK05777 345 LRRKGGEAES-ISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-282 4.25e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 84.81  E-value: 4.25e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   9 FVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQWDITQ 88
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  89 MTH----------PTSCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMK--------------FPPITLLFM 144
Cdd:COG0651 192 LAArlaeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTkvgvyailrvltllFGADPALFL 271

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243 145 SYhslnpnLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLY----ALMTSTIFLT-- 218
Cdd:COG0651 272 GT------LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAag 345

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 60858243 219 --LNTTKALKLSTLITTWTKTPSLNAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVI 282
Cdd:COG0651 346 aiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-210 1.12e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.06  E-value: 1.12e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    3 PQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAI---------EAATKYFLTQATASALILFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   74 SMTNAWSTGQ----WDITQMTHPTS----------CLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPI 139
Cdd:MTH00198 267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 60858243  140 TLLfmSYHSLNPNLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYAL 210
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAV 415
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-192 7.35e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 69.26  E-value: 7.35e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    7 LVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHP-RAIEAATKYFLTQATASALILFS-SMTNAWSTGQW 84
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEI 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   85 DI---------TQMTHPTSCLI----LTSAIAMKLGMVPFHFWFPEVLQGSPL-----------TTGLLLSTVMkfppIT 140
Cdd:CHL00049 194 ELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTpvvaflsvtskVAASALATRI----FD 269

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 60858243  141 LLFMSYHSLNPNLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:CHL00049 270 IPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVII 321
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 8.29e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.84  E-value: 8.29e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   50 PRAIEAATKYFLTQATASALILF-SSMTNAWSTGQWDITQM-----THPTSCLILT-----SAIAMKLGMVPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIalaliTSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  119 LQGSPLTTGLLLSTVMKFP----PITLLFMSYHSLNPN---LLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMA 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316


                 .
gi 60858243  192 I 192
Cdd:PRK02504 317 I 317
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 1.01e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 62.71  E-value: 1.01e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    2 NPQAKLVFVLSLLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHpRAIEAATKYFLTQATASALILFSSMTNAWST 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   82 GQWDIT-------QMTHPTSCLI----LTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLS------------TVMKFPP 138
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygflLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  139 ITLLFMSY-----HSLNPNLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLT----LLNFYLYA 209
Cdd:PRK08668 255 GTKLFSEFgtyrgVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHA 334

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 60858243  210 LMTSTIFLTLNT----TKALKLSTLITTWTKTPSLNAMLLLTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVI 282
Cdd:PRK08668 335 LFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-198 2.90e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 61.25  E-value: 2.90e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  49 HPRAIEAATKYFLTQATASALILFSSMTNAWSTGQW--DI-----TQMTHPTSCLILTS---AIAMKLGMVPFHFWFPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIaelaaAPLPLTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243 119 LQGSPLTTGLLLSTVMK--------------FPPITLLFMsyhslnPNLLTcMAIMSAALGGWMGLNQTQIRKILAFSSI 184
Cdd:COG1008 236 HVEAPTAGSVLLAGVLLkmggygllrfalplFPEASAYFA------PLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSV 308

                       170
                ....*....|....*
gi 60858243 185 SHLGWMAI-ILSFSP 198
Cdd:COG1008 309 SHMGFVLLgIFALNP 323
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 4.78e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 54.33  E-value: 4.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   33 LEINTLSILPLIS-KSHHPRAIEAATKYFLTQATASALILFSSmtnAWSTGQWDITQMTHPTSCL-------------IL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   99 TSAIAMKLGMVPFHFWFPEVLQGSP--LTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTC------MAIMSAALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  171 NQTQIRKILAFSSISHLGWM------AIILSFSPKLT----------LLNFYLYALMTSTIFLT-------LNTTKALKL 227
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyeTGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 60858243  228 STLITTWTKTpslNAMLLLTLLSLAGLPPMTGFLPKWLI 266
Cdd:PRK08376 387 GGLARTMPKT---TIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 1.57e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 52.57  E-value: 1.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   33 LEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFS-SMTNAwSTGQW---DITQMTHPTSCL-----ILTSAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLnmaDLAGALAENPTVvtafgFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  104 MKLGMVPFHFWFPEVLQG-SPLTTGLLLSTVMKFPPITLLFMSYHSLNP---------NLLTCMAIMSAALGGWMGLNQT 173
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGdfrfalglgWLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  174 QIRKILAFSSISHLGWMAIILSFSPKLTLLN--FYL--YALMTSTIFLTLN----TTKALKLSTLITTWTKTPSLNAMLL 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAFA 373

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 60858243  246 LTLLSLAGLPPMTGFLPKWLIIQELTKQDMAPTATVI 282
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-198 1.66e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.63  E-value: 1.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    50 PRAIEAATKYFLTQATASALILFS----SMTNAWSTGQWDITQMTHPTSC-----LILTSAIAMKLGMVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   119 ---LQGSPLTTGLLLST----VMKFpPITLLFMSYHSLNPnLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMA 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309


                  ....*...
gi 60858243   192 I-ILSFSP 198
Cdd:TIGR01972 310 LgIFSFNE 317
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-219 3.95e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.21  E-value: 3.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   13 LLLGTTITITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATA------SALILFSSMTNAWSTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   87 TQMTHPT----------SCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLN------ 150
Cdd:PRK08676 191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRqsgaae 270

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 60858243  151 --PNLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYALMTSTIFLTL 219
Cdd:PRK08676 271 qfSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 9-192 6.04e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.62  E-value: 6.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243    9 FVLSLLLgttiTITSNHWITAWAGLEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGqwdiTQ 88
Cdd:PRK06458 117 FLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTILVYANAA----TV 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   89 MTHPTSCLILTSAIAM----------------------KLGMVPFHFWFPEVLQGSP-----LTTGLLLST----VMKFP 137
Cdd:PRK06458 189 MGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVLRYY 268

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 60858243  138 PITLLFMSYHSLnPNLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK06458 269 ILIDAAIGSDFP-GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 2.69e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 41.09  E-value: 2.69e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 60858243   295 RLAYCATITLPPHTTNHMKQWHTHKSSN-PLIAISAVVSIMLLPIAP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNtLLLPTLTTLSILLLPLTP 51
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 7.09e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 44.25  E-value: 7.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   34 EINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQWDITQMTH-----PTSCLILTSAIAMKLGM 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  109 V------PFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLF--------MSYHSLNPNLLTCMAIMSAALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  175 IRKILAFSSISHLGWMAIILSFSPKLTLLNFYLYA----LMTSTIFL----TLNTTKALKLSTLITTWTKTPSLNAMLLL 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260
                 ....*....|....*....|..
gi 60858243  247 TLLSLAGLPPMTGFLPKWLIIQ 268
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQ 391
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 1.47e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 43.27  E-value: 1.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   50 PRAIEAATKYFLTQATASALILFSSMT----NAWSTGQWDITQ-MTHPTSC-------LILTSAIAMKLGMVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADlLNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  118 VLQGSPLTTGLLLSTVM-KFPPITLLFMSY-------HSLNPNLLTcMAIMSAALGGWMGLNQTQIRKILAFSSISHLGW 189
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLplfpdasHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                 ...
gi 60858243  190 MAI 192
Cdd:PRK05846 316 VTL 318
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 2.12e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.76  E-value: 2.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   55 AATKYFLTQATASALILFSSMTNAWSTGQWDITQMTHPTSCLILTSAI----------AMKLGMVPFHFWFPE--VLQGS 122
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLSTQLlllapilvgfGIKIPLVPFHTWLPDahVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  123 P---LTTGLLLST----VMKFPpITLLFMSYHSLNPNLLTcMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILS 195
Cdd:PRK06473 238 PvsvLLAGVLLKLgtygLLRFG-VGLFPEAWVYLAPWLAT-WAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAA 315


                 ....*...
gi 60858243  196 FSPKLTLL 203
Cdd:PRK06473 316 AATPLSIL 323
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 2.34e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.80  E-value: 2.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   33 LEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFS-----SMTNAWSTGqwDITQMTHP--------TSCLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  100 SAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLS----TVMKFPPITLLFMSYHS-------LNPNLLTCMAIMSAALGGWM 168
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIVYDVFKAnfvfttlPFNNVFMILAALAIVFGSVL 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  169 GLNQTQIRKILAFSSISHLGWMAIILSFSPKLTLLNFYLY----ALMTSTIFLTLNTTK----ALKLSTLITTWTKTPSL 240
Cdd:PRK12662 297 AILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKI 376

                        250       260
                 ....*....|....*....|....*..
gi 60858243  241 NAMLLLTLLSLAGLPPMTGFLPKWLII 267
Cdd:PRK12662 377 TLAFVLLSLSLIGMPPTSGFVAKWYIL 403
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-271 2.41e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.02  E-value: 2.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   92 PTSCLILTSAIAmKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPNLLTCMAI-----MSAALGG 166
Cdd:MTH00032 226 IIGILLLIGCIG-KSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAA 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  167 WMGLNQTQIRKILAFSSISHLGWMAIILSF--SPKLTLLNFYLYALMTSTIFL---------TLNTTKALKLSTLITTwt 235
Cdd:MTH00032 305 TVGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS-- 382

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 60858243  236 kTPSLNAMLLLTLLSLAGLPPMTGFLPKWLIIqELT 271
Cdd:MTH00032 383 -IPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-197 2.63e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.71  E-value: 2.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   55 AATKYFLTQATASALILFSSMTNAWSTGQ--WDITQMTH---PTSCLILTSA---IA--MKLGMVPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYAgflIAfgVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  118 ----VLQGSPLTTG---LLLSTVMKFPPITLLFMSyhslnpnLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK12561 218 pvsmILAGVLLKMGgyaLIRFNVQMLPDAHVYFAP-------ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290


                 ....*...
gi 60858243  191 AI-ILSFS 197
Cdd:PRK12561 291 LLgIAAFT 298
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 96-194 6.99e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 41.29  E-value: 6.99e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  96 LILTSAIAmKLGMVPFHFWFPEVLQG----SPL-------TTGLLLstVMKFPPITllfmsyhSLNPNLLTCMAIMSAA- 163
Cdd:COG1009 216 LLLLGAFG-KSAQFPLHFWLPDAMEGptpvSALlhaatmvKAGVYL--LARLSPLF-------ALSPVWLTVVAIIGAIt 285

                        90       100       110
                ....*....|....*....|....*....|...
gi 60858243 164 --LGGWMGLNQTQIRKILAFSSISHLGWMAIIL 194
Cdd:COG1009 286 alFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-197 7.78e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 41.35  E-value: 7.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   48 HHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQWDITQMTHPTS---------------CLILTSAiAMKLGMVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  113 FWFPEVLQGSPLTTGLLLSTVMKFPPITLLFMSYHSLNPN-----LLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170
                 ....*....|
gi 60858243  188 GWMAIILSFS 197
Cdd:PRK12649 315 AYLMTMYGYT 324
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 78-218 8.02e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 41.09  E-value: 8.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   78 AWSTGQWDITQMTH-------PTSCLILtsAIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITLL-----FMS 145
Cdd:MTH00211 185 LLNLNSWEISQLFIlnldltlFLLGLLL--AAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLirlspLFQ 262

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 60858243  146 YHSLNPNLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSFS-PKLTLLNFYLYALMTSTIFLT 218
Cdd:MTH00211 263 NNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNqPQLAFLHICTHAFFKAMLFMC 336
PRK12650 PRK12650
DUF4040 family protein;
98-263 9.42e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.18  E-value: 9.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   98 LTSAIAMKLGM--------VPFHFWFPEVLQG-SPLTTGLLLSTVMK--------FPPITLLFMSYHSLnpnLLTCmAIM 160
Cdd:PRK12650 206 LTTVVAVLIAVaaftksaqFPFHFWLPEAMAAiTPVSAFLHAAAVVKagiylllrFSPVFHDVAVWNWL---LIIV-GMI 281

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  161 SAALGGWMGLNQTQIRKILAFSSISHLGWM-AIILSFSP-KLT--LLNFYLYALMTSTIFLTL----NTTKALKLSTLIT 232
Cdd:PRK12650 282 TALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGS 361

                        170       180       190
                 ....*....|....*....|....*....|.
gi 60858243  233 TWTKTPSLNAMLLLTLLSLAGLPPMTGFLPK 263
Cdd:PRK12650 362 LWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-217 1.09e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 40.71  E-value: 1.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   33 LEINTLSILPLISKSHHPRAIEAATKYFLTQATASALILFSSMTNAWSTGQWDIT--QMTHPTSCLILTSAIAMKLGMVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  111 FHFWFPEVLQGSPLTTGLLLS-TVMK---FPPITLLFMSYHSLNPnlLTCMAIMSAALGGWMGLNQTQIRKILAFSSISH 186
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSgVVVKagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                        170       180       190
                 ....*....|....*....|....*....|.
gi 60858243  187 LGWmaIILsfSPKLTLLNFYLYALMTSTIFL 217
Cdd:PRK07234 281 LGF--ILA--APLVGGLYALAHGLVKSTLFL 307
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 1.44e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  101 AIAMKLGMVPFHFWFPEVLQGSPLTTGLLLSTV-MKFPPITLLFMSY-------HSLNPNLLTcMAIMSAALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWpilplgaQNLAPAVIA-MGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|..
gi 60858243  173 TQIRKILAFSSISHLGWMAIIL 194
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITL 339
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 2.05e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.01  E-value: 2.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   52 AIEAATKYFLTQATASALILFSSMTNAWSTGQWDITQMTHPTSCLILTSAIAMKLGMV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  116 PEVLQGSPLTTGLLLSTVMKFPPITLLFMSY--HSLNPNLLTCMAI---MSAALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYpvFEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 2.31e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.70  E-value: 2.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   55 AATKYFLTQATASALILFSSMTNAWSTGQWD------ITQMTHPTSCLILTSAI----AMKLGMVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  124 LTTGLLLSTVMKFPPITLLFM-------SYHSLNPNLLTCMAImSAALGGWMGLNQTQIRKILAFSSISHLGWMAIILSF 196
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316


                 ....*..
gi 60858243  197 SPKLTLL 203
Cdd:PRK07363 317 GTQLSLL 323
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 2.65e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 39.71  E-value: 2.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   55 AATKYFLTQATASALILFSSMTNAWSTGQWDITQMTHPT-----SCLILTSAIAMKLGMVPFHFWFPEVLQGSPLTTGLL 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 60858243  130 LSTVM-KFPPITLLFMSYHSLNPNLLTCMAIM-----SAALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-260 5.15e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 38.53  E-value: 5.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   55 AATKYFLTQATASALILFSSMTNAWSTGQ-----WDITQMTHPTSCLILTS-----AIAMKLGMVPFHFWFPEVLQGSPL 124
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDTptfdmTALAAKDFGLGFQLLCYaglliAYGVKLPIVPLHTWLPDAHGEATA 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243  125 TTGLLLSTVM-KFPPITLLFMSY------HSLNPNLLTCMAIMSAALGGWMGLNQTQIRKILAFSSISHLGWMAI-ILSF 196
Cdd:PRK02546 246 PVHMLLAGILlKMGGYALLRMNAgmlpdaHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIgIGSF 325

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 60858243  197 SPKLT---LLNFYLYALMTSTIFL----TLNTTKALKLSTLITTWTKTPSLNAMLLLTLLSLAGLPPMTGF 260
Cdd:PRK02546 326 TDLGTsgaMLQMISHGLIGASLFFlvgaTYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGF 396
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 7.25e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 38.37  E-value: 7.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 60858243   96 LILTSAIAmKLGMVPFHFWFPEVLQGSPLTTGLLLSTVMKFPPITL---LFMSYHSLNPNLLTCMAIMSAA--LGGWMGL 170
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLvarLAPGFADVPVWRPTVLVLGLATmlLGGWRAL 286

                         90       100
                 ....*....|....*....|....
gi 60858243  171 NQTQIRKILAFSSISHLGWMAIIL 194
Cdd:PRK12644 287 RQHDLKLILAYGTVSQLGFLTVLV 310
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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