|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-297 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 618.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00119 41 CLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVIL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00119 121 LLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLF 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00119 201 LHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYA 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00119 281 ILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILT 337
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-297 |
2.13e-122 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 355.64 E-value: 2.13e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSY-----LNketWN 75
Cdd:COG1290 49 SFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WI 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 76 VGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIVGLT 154
Cdd:COG1290 126 IGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALV 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 155 LVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNllGDPENFTPANPLVTPPHIK 230
Cdd:COG1290 206 VLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQ 283
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6048496 231 PEWYFLF*YAILRSIP--NKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:COG1290 284 PDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLT 352
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-167 |
1.76e-81 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 244.59 E-value: 1.76e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLN--KETWNVGV 78
Cdd:cd00284 32 CLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGV 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHL 158
Cdd:cd00284 112 ILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHL 191
|
....*....
gi 6048496 159 TFLHETGSN 167
Cdd:cd00284 192 LFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-165 |
3.83e-71 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 218.02 E-value: 3.83e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLNKETWNVGV 78
Cdd:pfam00033 23 CLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHL 158
Cdd:pfam00033 103 ILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHL 182
|
....*..
gi 6048496 159 TFLHETG 165
Cdd:pfam00033 183 LFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
197-286 |
2.61e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 63.66 E-value: 2.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 197 LSLLVSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLF*YAILRSIPNKLGGVLALAASILVLFLVPLLHT-SKLRS 275
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122
|
90
....*....|.
gi 6048496 276 MTFRPLSQILF 286
Cdd:TIGR01156 123 PFRRPVATTVF 133
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-297 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 618.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00119 41 CLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVIL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00119 121 LLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLF 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00119 201 LHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYA 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00119 281 ILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILT 337
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-297 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 577.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00131 40 CLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00131 120 LLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLF 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00131 200 LHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYA 279
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00131 280 ILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILT 336
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-297 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 565.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00100 40 CLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIIL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00100 120 LFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLF 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00100 200 LHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYA 279
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00100 280 ILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLT 336
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-297 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 555.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00074 41 CLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVIL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00074 121 LFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLF 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00074 201 LHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYA 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00074 281 ILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILT 337
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-297 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 546.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00191 37 CLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00191 117 LILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLF 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00191 197 LHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYA 276
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00191 277 ILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLT 333
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-297 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 543.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00156 30 CLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVII 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00156 110 LFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLF 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00156 190 LHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYA 269
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00156 270 ILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLT 326
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-297 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 527.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00145 41 CLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00145 121 LLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLF 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00145 201 LHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYA 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00145 281 ILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILT 337
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-297 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 508.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00034 40 CLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVIL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00034 120 FLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLF 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00034 200 LHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYA 279
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00034 280 ILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILT 336
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-297 |
1.99e-179 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 499.59 E-value: 1.99e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00016 41 CLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVIL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00016 121 LLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLF 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00016 201 LHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYA 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00016 281 ILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLT 337
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-297 |
1.70e-153 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 434.13 E-value: 1.70e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00053 41 CLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLI 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00053 121 FLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIA 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00053 201 LHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYA 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00053 281 ILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLT 337
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-297 |
6.73e-153 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 432.59 E-value: 6.73e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00022 39 CLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVI 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00022 119 FLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIY 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00022 199 LHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYA 278
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00022 279 ILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLT 335
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-297 |
1.99e-149 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 423.56 E-value: 1.99e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00224 41 CLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVIL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00224 121 FILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMF 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00224 201 LHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYA 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00224 281 ILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILT 337
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-297 |
2.13e-122 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 355.64 E-value: 2.13e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSY-----LNketWN 75
Cdd:COG1290 49 SFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WI 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 76 VGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIVGLT 154
Cdd:COG1290 126 IGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALV 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 155 LVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNllGDPENFTPANPLVTPPHIK 230
Cdd:COG1290 206 VLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQ 283
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6048496 231 PEWYFLF*YAILRSIP--NKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:COG1290 284 PDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLT 352
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-297 |
3.36e-121 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 352.32 E-value: 3.36e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00033 37 CLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00033 117 FFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLT 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLF* 238
Cdd:MTH00033 197 LHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFA 276
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 6048496 239 YAILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00033 277 YAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
2-269 |
2.53e-102 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 303.01 E-value: 2.53e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 2 LITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILL 81
Cdd:MTH00086 30 LVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIY 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 82 LTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTFL 161
Cdd:MTH00086 110 LLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 162 HETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLsLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YAI 241
Cdd:MTH00086 190 HSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAI 268
|
250 260
....*....|....*....|....*...
gi 6048496 242 LRSIPNKLGGVLALAASILVLFLVPLLH 269
Cdd:MTH00086 269 LRAIPNKVLGVIALLMSIVVFYFFIFVN 296
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-297 |
1.82e-88 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 268.00 E-value: 1.82e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 2 LITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILL 81
Cdd:MTH00046 32 MVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILY 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 82 LTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTFL 161
Cdd:MTH00046 112 LLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 162 HETGSNNPLGIPSD-CDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00046 192 HKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYA 271
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496 241 ILRSIPNKLGGvLALAASILVLFLVPLLHTSKLRSMtfrpLSQILFWALVANVLVLT 297
Cdd:MTH00046 272 MLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLS 323
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-167 |
1.76e-81 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 244.59 E-value: 1.76e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLN--KETWNVGV 78
Cdd:cd00284 32 CLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGV 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHL 158
Cdd:cd00284 112 ILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHL 191
|
....*....
gi 6048496 159 TFLHETGSN 167
Cdd:cd00284 192 LFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-165 |
3.83e-71 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 218.02 E-value: 3.83e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLNKETWNVGV 78
Cdd:pfam00033 23 CLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHL 158
Cdd:pfam00033 103 ILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHL 182
|
....*..
gi 6048496 159 TFLHETG 165
Cdd:pfam00033 183 LFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
168-297 |
5.23e-49 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 159.73 E-value: 5.23e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 168 NPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YAILRSIPN 247
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 6048496 248 KLGGVLALAASILVLFLVPLLHTSKLRSmTFRPLSQILFWALVANVLVLT 297
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLG 129
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
49-214 |
1.63e-45 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 151.63 E-value: 1.63e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 49 SFFFICIYLHIGRGLYYGSYLNKE--TWNVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAW 126
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 127 GGFSVDNPTLTRFFALHF-LLPFVIVGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLAL 205
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 6048496 206 FSPNLLGDP 214
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
219-297 |
7.78e-39 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 131.83 E-value: 7.78e-39
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6048496 219 PANPLVTPPHIKPEWYFLF*YAILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLG 79
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-170 |
1.55e-35 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 127.52 E-value: 1.55e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKE--TWNVGV 78
Cdd:PRK03735 51 CFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGV 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIVGLTLVH 157
Cdd:PRK03735 131 LIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAH 210
|
170
....*....|...
gi 6048496 158 LTFLHETGSNNPL 170
Cdd:PRK03735 211 FLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-170 |
1.21e-31 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 117.13 E-value: 1.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKE--TWNVGV 78
Cdd:CHL00070 43 CFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGV 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIVGLTLVH 157
Cdd:CHL00070 123 VLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMH 202
|
170
....*....|...
gi 6048496 158 LTFLHETGSNNPL 170
Cdd:CHL00070 203 FLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
190-286 |
7.10e-14 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 68.10 E-value: 7.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 190 ILGFIlmlSLLVSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLF*YAILRSIPNKLGGVLALAASILVLFLVPLL- 268
Cdd:CHL00058 44 ILGTI---ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115
|
90
....*....|....*...
gi 6048496 269 HTSKLRSMTFRPLSQILF 286
Cdd:CHL00058 116 NVNKFQNPFRRPVATTVF 133
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
197-286 |
3.24e-13 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 65.97 E-value: 3.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 197 LSLLVSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLF*YAILRSIPNKLGGVLALAASILVLFLVPLLHT-SKLRS 275
Cdd:COG5679 49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQN 123
|
90
....*....|.
gi 6048496 276 MTFRPLSQILF 286
Cdd:COG5679 124 PFRRPVATAVF 134
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
197-286 |
2.61e-12 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 63.66 E-value: 2.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496 197 LSLLVSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLF*YAILRSIPNKLGGVLALAASILVLFLVPLLHT-SKLRS 275
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122
|
90
....*....|.
gi 6048496 276 MTFRPLSQILF 286
Cdd:TIGR01156 123 PFRRPVATTVF 133
|
|
|