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Conserved domains on  [gi|6048496|gb|AAF02231|]
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cytochrome b, partial (mitochondrion) [Agelaius tricolor]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-297 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 618.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00119  41 CLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVIL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00119 121 LLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLF 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00119 201 LHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYA 280

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00119 281 ILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILT 337
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-297 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 618.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00119  41 CLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVIL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00119 121 LLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLF 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00119 201 LHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYA 280

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00119 281 ILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILT 337
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-297 2.13e-122

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 355.64  E-value: 2.13e-122
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSY-----LNketWN 75
Cdd:COG1290  49 SFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WI 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   76 VGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIVGLT 154
Cdd:COG1290 126 IGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALV 205

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496  155 LVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNllGDPENFTPANPLVTPPHIK 230
Cdd:COG1290 206 VLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQ 283

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6048496  231 PEWYFLF*YAILRSIP--NKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:COG1290 284 PDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLT 352
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-167 1.76e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 244.59  E-value: 1.76e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLN--KETWNVGV 78
Cdd:cd00284  32 CLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGV 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHL 158
Cdd:cd00284 112 ILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHL 191


                ....*....
gi 6048496  159 TFLHETGSN 167
Cdd:cd00284 192 LFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-165 3.83e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 218.02  E-value: 3.83e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496      1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLNKETWNVGV 78
Cdd:pfam00033  23 CLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHL 158
Cdd:pfam00033 103 ILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHL 182


                  ....*..
gi 6048496    159 TFLHETG 165
Cdd:pfam00033 183 LFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 197-286 2.61e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 63.66  E-value: 2.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    197 LSLLVSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLF*YAILRSIPNKLGGVLALAASILVLFLVPLLHT-SKLRS 275
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|.
gi 6048496    276 MTFRPLSQILF 286
Cdd:TIGR01156 123 PFRRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-297 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 618.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00119  41 CLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVIL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00119 121 LLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLF 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00119 201 LHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYA 280

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00119 281 ILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILT 337
CYTB MTH00131
cytochrome b; Provisional
 1-297 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 577.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00131  40 CLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVL 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00131 120 LLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLF 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00131 200 LHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYA 279

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00131 280 ILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILT 336
CYTB MTH00100
cytochrome b; Provisional
 1-297 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 565.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00100  40 CLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIIL 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00100 120 LFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLF 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00100 200 LHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYA 279

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00100 280 ILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLT 336
CYTB MTH00074
cytochrome b; Provisional
 1-297 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 555.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00074  41 CLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVIL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00074 121 LFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLF 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00074 201 LHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYA 280

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00074 281 ILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILT 337
CYTB MTH00191
cytochrome b; Provisional
 1-297 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 546.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00191  37 CLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00191 117 LILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLF 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00191 197 LHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYA 276

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00191 277 ILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLT 333
CYTB MTH00156
cytochrome b; Provisional
 1-297 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 543.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00156  30 CLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVII 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00156 110 LFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLF 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00156 190 LHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYA 269

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00156 270 ILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLT 326
CYTB MTH00145
cytochrome b; Provisional
 1-297 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 527.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00145  41 CLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00145 121 LLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLF 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00145 201 LHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYA 280

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00145 281 ILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILT 337
CYTB MTH00034
cytochrome b; Validated
 1-297 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 508.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00034  40 CLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVIL 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00034 120 FLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLF 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00034 200 LHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYA 279

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00034 280 ILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILT 336
CYTB MTH00016
cytochrome b; Validated
 1-297 1.99e-179

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 499.59  E-value: 1.99e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00016  41 CLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVIL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00016 121 LLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLF 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00016 201 LHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYA 280

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00016 281 ILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLT 337
CYTB MTH00053
cytochrome b; Provisional
 1-297 1.70e-153

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 434.13  E-value: 1.70e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00053  41 CLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLI 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00053 121 FLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIA 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00053 201 LHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYA 280

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00053 281 ILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLT 337
CYTB MTH00022
cytochrome b; Validated
 1-297 6.73e-153

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 432.59  E-value: 6.73e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00022  39 CLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVI 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00022 119 FLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIY 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00022 199 LHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYA 278

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00022 279 ILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLT 335
CYTB MTH00224
cytochrome b; Provisional
 1-297 1.99e-149

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 423.56  E-value: 1.99e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00224  41 CLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVIL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00224 121 FILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMF 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00224 201 LHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYA 280

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00224 281 ILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILT 337
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-297 2.13e-122

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 355.64  E-value: 2.13e-122
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSY-----LNketWN 75
Cdd:COG1290  49 SFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WI 125

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   76 VGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIVGLT 154
Cdd:COG1290 126 IGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALV 205

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496  155 LVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNllGDPENFTPANPLVTPPHIK 230
Cdd:COG1290 206 VLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQ 283

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6048496  231 PEWYFLF*YAILRSIP--NKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:COG1290 284 PDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLT 352
CYTB MTH00033
cytochrome b; Provisional
 1-297 3.36e-121

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 352.32  E-value: 3.36e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVIL 80
Cdd:MTH00033  37 CLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    81 LLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTF 160
Cdd:MTH00033 117 FFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLT 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   161 LHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLF* 238
Cdd:MTH00033 197 LHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFA 276

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 6048496   239 YAILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:MTH00033 277 YAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335
CYTB MTH00086
cytochrome b; Provisional
 2-269 2.53e-102

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 303.01  E-value: 2.53e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     2 LITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILL 81
Cdd:MTH00086  30 LVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIY 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    82 LTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTFL 161
Cdd:MTH00086 110 LLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   162 HETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLsLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YAI 241
Cdd:MTH00086 190 HSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAI 268

                        250       260
                 ....*....|....*....|....*...
gi 6048496   242 LRSIPNKLGGVLALAASILVLFLVPLLH 269
Cdd:MTH00086 269 LRAIPNKVLGVIALLMSIVVFYFFIFVN 296
CYTB MTH00046
cytochrome b; Validated
 2-297 1.82e-88

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 268.00  E-value: 1.82e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     2 LITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILL 81
Cdd:MTH00046  32 MVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILY 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    82 LTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHLTFL 161
Cdd:MTH00046 112 LLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYL 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   162 HETGSNNPLGIPSD-CDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YA 240
Cdd:MTH00046 192 HKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYA 271

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 6048496   241 ILRSIPNKLGGvLALAASILVLFLVPLLHTSKLRSMtfrpLSQILFWALVANVLVLT 297
Cdd:MTH00046 272 MLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLS 323
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-167 1.76e-81

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 244.59  E-value: 1.76e-81
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLN--KETWNVGV 78
Cdd:cd00284  32 CLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGV 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHL 158
Cdd:cd00284 112 ILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHL 191


                ....*....
gi 6048496  159 TFLHETGSN 167
Cdd:cd00284 192 LFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-165 3.83e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 218.02  E-value: 3.83e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496      1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYG--SYLNKETWNVGV 78
Cdd:pfam00033  23 CLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGV 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIVGLTLVHL 158
Cdd:pfam00033 103 ILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHL 182


                  ....*..
gi 6048496    159 TFLHETG 165
Cdd:pfam00033 183 LFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 168-297 5.23e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 159.73  E-value: 5.23e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496  168 NPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF*YAILRSIPN 247
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 6048496  248 KLGGVLALAASILVLFLVPLLHTSKLRSmTFRPLSQILFWALVANVLVLT 297
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLG 129
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
49-214 1.63e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 151.63  E-value: 1.63e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     49 SFFFICIYLHIGRGLYYGSYLNKE--TWNVGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAW 126
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    127 GGFSVDNPTLTRFFALHF-LLPFVIVGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYTIKDILGFILMLSLLVSLAL 205
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 6048496    206 FSPNLLGDP 214
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
219-297 7.78e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 131.83  E-value: 7.78e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6048496    219 PANPLVTPPHIKPEWYFLF*YAILRSIPNKLGGVLALAASILVLFLVPLLHTSKLRSMTFRPLSQILFWALVANVLVLT 297
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLG 79
PRK03735 PRK03735
cytochrome b6; Provisional
 1-170 1.55e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 127.52  E-value: 1.55e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKE--TWNVGV 78
Cdd:PRK03735  51 CFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGV 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIVGLTLVH 157
Cdd:PRK03735 131 LIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAH 210

                        170
                 ....*....|...
gi 6048496   158 LTFLHETGSNNPL 170
Cdd:PRK03735 211 FLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-170 1.21e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 117.13  E-value: 1.21e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496     1 CLITQIITGLLLAMHYTADTNLAFSSVAHMCRDVQFGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLNKE--TWNVGV 78
Cdd:CHL00070  43 CFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGV 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    79 ILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIP*IGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVIVGLTLVH 157
Cdd:CHL00070 123 VLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMH 202

                        170
                 ....*....|...
gi 6048496   158 LTFLHETGSNNPL 170
Cdd:CHL00070 203 FLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 190-286 7.10e-14

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 68.10  E-value: 7.10e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496   190 ILGFIlmlSLLVSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLF*YAILRSIPNKLGGVLALAASILVLFLVPLL- 268
Cdd:CHL00058  44 ILGTI---ACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                         90
                 ....*....|....*...
gi 6048496   269 HTSKLRSMTFRPLSQILF 286
Cdd:CHL00058 116 NVNKFQNPFRRPVATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 197-286 3.24e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 65.97  E-value: 3.24e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496  197 LSLLVSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLF*YAILRSIPNKLGGVLALAASILVLFLVPLLHT-SKLRS 275
Cdd:COG5679  49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQN 123

                        90
                ....*....|.
gi 6048496  276 MTFRPLSQILF 286
Cdd:COG5679 124 PFRRPVATAVF 134
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 197-286 2.61e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 63.66  E-value: 2.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6048496    197 LSLLVSLALFSPNLLGDPenftpANPLVTPPHIKPEWYFLF*YAILRSIPNKLGGVLALAASILVLFLVPLLHT-SKLRS 275
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90
                  ....*....|.
gi 6048496    276 MTFRPLSQILF 286
Cdd:TIGR01156 123 PFRRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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