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Conserved domains on  [gi|599131055|gb|EYE89883|]
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hypothetical protein Q428_00650 [Fervidicella metallireducens AeB]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1779 super family cl20367
TATA-box binding; TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis ...
 121-227 1.52e-12

TATA-box binding; TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis contains a circularly permuted TATA-box binding protein-like fold. Jian-Xiang Liu, Qi Xie, Jun Lin. Protein Structural Data Mining and Evolutionary Bioinformatic Analysis on Domains of TATA-box Binding Protein-like Fold. Life Science Journal 2014; 11(2): 298-302 (not yet in PubMed 27-02-2014).


The actual alignment was detected with superfamily member pfam08680:

Pssm-ID: 400839  Cd Length: 184  Bit Score: 63.88  E-value: 1.52e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 599131055  121 ENINNIWRTISEAF-AIYNVEPSFSTLIQGKYNKRFSISEMKGIGEKIFMQNSGNVIGKIDDGKVVSLYGYIPGLGNSID 199
Cdd:pfam08680  76 GELEELYKKVEETLnKLFGEKPQIFSCITGEFSGKLDGVELEKKAEQILKSFDAKKVESLKEENFVSVSAYSPLWDEYIL 155

                          90       100
                  ....*....|....*....|....*....
gi 599131055  200 VS-RKKVNLNVALRYSEVNCCTYIWIGNP 227
Cdd:pfam08680 156 VTgGKKMNLQIALRYNSLGGKTYVTIGTP 184
 
Name Accession Description Interval E-value
DUF1779 pfam08680
TATA-box binding; TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis ...
 121-227 1.52e-12

TATA-box binding; TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis contains a circularly permuted TATA-box binding protein-like fold. Jian-Xiang Liu, Qi Xie, Jun Lin. Protein Structural Data Mining and Evolutionary Bioinformatic Analysis on Domains of TATA-box Binding Protein-like Fold. Life Science Journal 2014; 11(2): 298-302 (not yet in PubMed 27-02-2014).


Pssm-ID: 400839  Cd Length: 184  Bit Score: 63.88  E-value: 1.52e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 599131055  121 ENINNIWRTISEAF-AIYNVEPSFSTLIQGKYNKRFSISEMKGIGEKIFMQNSGNVIGKIDDGKVVSLYGYIPGLGNSID 199
Cdd:pfam08680  76 GELEELYKKVEETLnKLFGEKPQIFSCITGEFSGKLDGVELEKKAEQILKSFDAKKVESLKEENFVSVSAYSPLWDEYIL 155

                          90       100
                  ....*....|....*....|....*....
gi 599131055  200 VS-RKKVNLNVALRYSEVNCCTYIWIGNP 227
Cdd:pfam08680 156 VTgGKKMNLQIALRYNSLGGKTYVTIGTP 184
 
Name Accession Description Interval E-value
DUF1779 pfam08680
TATA-box binding; TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis ...
 121-227 1.52e-12

TATA-box binding; TATA-box_bdg is a family of bacterial proteins. YwmB from Bacillus subtilis contains a circularly permuted TATA-box binding protein-like fold. Jian-Xiang Liu, Qi Xie, Jun Lin. Protein Structural Data Mining and Evolutionary Bioinformatic Analysis on Domains of TATA-box Binding Protein-like Fold. Life Science Journal 2014; 11(2): 298-302 (not yet in PubMed 27-02-2014).


Pssm-ID: 400839  Cd Length: 184  Bit Score: 63.88  E-value: 1.52e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 599131055  121 ENINNIWRTISEAF-AIYNVEPSFSTLIQGKYNKRFSISEMKGIGEKIFMQNSGNVIGKIDDGKVVSLYGYIPGLGNSID 199
Cdd:pfam08680  76 GELEELYKKVEETLnKLFGEKPQIFSCITGEFSGKLDGVELEKKAEQILKSFDAKKVESLKEENFVSVSAYSPLWDEYIL 155

                          90       100
                  ....*....|....*....|....*....
gi 599131055  200 VS-RKKVNLNVALRYSEVNCCTYIWIGNP 227
Cdd:pfam08680 156 VTgGKKMNLQIALRYNSLGGKTYVTIGTP 184
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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