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Conserved domains on  [gi|594019553|gb|AHL69624|]
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PsbL, partial (chloroplast) [Chloroidium saccharophilum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PsbL super family cl27429
PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from ...
 1-31 1.20e-14

PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from plants and Cyanobacteria. The function of this small protein is unknown. Interestingly the mRNA for this protein requires a post-transcriptional modification of an ACG triplet to form an AUG initiator codon.


The actual alignment was detected with superfamily member CHL00038:

Pssm-ID: 474919  Cd Length: 38  Bit Score: 58.94  E-value: 1.20e-14
                        10        20        30
                ....*....|....*....|....*....|.
gi 594019553  1 KQSVELNRTSLYWGLLLIFVLAVLFSSYIFN 31
Cdd:CHL00038  8 KQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
 
Name Accession Description Interval E-value
psbL CHL00038
photosystem II protein L
 1-31 1.20e-14

photosystem II protein L


Pssm-ID: 176979  Cd Length: 38  Bit Score: 58.94  E-value: 1.20e-14
                        10        20        30
                ....*....|....*....|....*....|.
gi 594019553  1 KQSVELNRTSLYWGLLLIFVLAVLFSSYIFN 31
Cdd:CHL00038  8 KQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
PsbL COG5726
Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem ...
 1-31 4.92e-11

Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem II reaction center protein L, PsbL is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444436  Cd Length: 38  Bit Score: 49.75  E-value: 4.92e-11
                        10        20        30
                ....*....|....*....|....*....|.
gi 594019553  1 KQSVELNRTSLYWGLLLIFVLAVLFSSYIFN 31
Cdd:COG5726   8 NQPVELNRTSLYLGLLLVFVLALLFSSYFFN 38
PsbL pfam02419
PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from ...
 1-31 5.22e-10

PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from plants and Cyanobacteria. The function of this small protein is unknown. Interestingly the mRNA for this protein requires a post-transcriptional modification of an ACG triplet to form an AUG initiator codon.


Pssm-ID: 396815  Cd Length: 37  Bit Score: 47.07  E-value: 5.22e-10
                         10        20        30
                 ....*....|....*....|....*....|.
gi 594019553   1 KQSVELNRTSLYWGLLLIFVLAVLFSSYIFN 31
Cdd:pfam02419  7 NQPVELNRTSLYLGLLLVFVLALLFSSYFFN 37
 
Name Accession Description Interval E-value
psbL CHL00038
photosystem II protein L
 1-31 1.20e-14

photosystem II protein L


Pssm-ID: 176979  Cd Length: 38  Bit Score: 58.94  E-value: 1.20e-14
                        10        20        30
                ....*....|....*....|....*....|.
gi 594019553  1 KQSVELNRTSLYWGLLLIFVLAVLFSSYIFN 31
Cdd:CHL00038  8 KQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38
PsbL COG5726
Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem ...
 1-31 4.92e-11

Photosystem II reaction center protein L, PsbL [Energy production and conversion]; Photosystem II reaction center protein L, PsbL is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444436  Cd Length: 38  Bit Score: 49.75  E-value: 4.92e-11
                        10        20        30
                ....*....|....*....|....*....|.
gi 594019553  1 KQSVELNRTSLYWGLLLIFVLAVLFSSYIFN 31
Cdd:COG5726   8 NQPVELNRTSLYLGLLLVFVLALLFSSYFFN 38
PsbL pfam02419
PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from ...
 1-31 5.22e-10

PsbL protein; This family consists of the photosystem II reaction centre protein PsbJ from plants and Cyanobacteria. The function of this small protein is unknown. Interestingly the mRNA for this protein requires a post-transcriptional modification of an ACG triplet to form an AUG initiator codon.


Pssm-ID: 396815  Cd Length: 37  Bit Score: 47.07  E-value: 5.22e-10
                         10        20        30
                 ....*....|....*....|....*....|.
gi 594019553   1 KQSVELNRTSLYWGLLLIFVLAVLFSSYIFN 31
Cdd:pfam02419  7 NQPVELNRTSLYLGLLLVFVLALLFSSYFFN 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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