NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|589908384|ref|NP_001277183|]
View 

Golgi-associated RAB2 interactor protein 1A isoform c [Homo sapiens]

Protein Classification

FAM71 family protein( domain architecture ID 10575707)

FAM71 family protein is a DUF3699 domain-containing protein; similar to Homo sapiens proteins FAM71C, FAM71D, FAM71E1, FAM71F1 and FAM71F2

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3699 pfam12480
Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is ...
 25-90 3.71e-23

Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


:

Pssm-ID: 463601  Cd Length: 71  Bit Score: 88.16  E-value: 3.71e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 589908384   25 LSRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLH--EKHPEIVFQFWVRLVKILQKGLSITTKDP 90
Cdd:pfam12480   4 LTRLLPLKFVELSVHDKPKQLLKLKLVTGRSFYLELCkpADHPETLFQMWIRLLHLLRSPLSTTEKDQ 71
 
Name Accession Description Interval E-value
DUF3699 pfam12480
Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is ...
 25-90 3.71e-23

Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


Pssm-ID: 463601  Cd Length: 71  Bit Score: 88.16  E-value: 3.71e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 589908384   25 LSRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLH--EKHPEIVFQFWVRLVKILQKGLSITTKDP 90
Cdd:pfam12480   4 LTRLLPLKFVELSVHDKPKQLLKLKLVTGRSFYLELCkpADHPETLFQMWIRLLHLLRSPLSTTEKDQ 71
 
Name Accession Description Interval E-value
DUF3699 pfam12480
Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is ...
 25-90 3.71e-23

Protein of unknown function (DUF3699); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


Pssm-ID: 463601  Cd Length: 71  Bit Score: 88.16  E-value: 3.71e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 589908384   25 LSRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLH--EKHPEIVFQFWVRLVKILQKGLSITTKDP 90
Cdd:pfam12480   4 LTRLLPLKFVELSVHDKPKQLLKLKLVTGRSFYLELCkpADHPETLFQMWIRLLHLLRSPLSTTEKDQ 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH