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Conserved domains on  [gi|586678484|ref|XP_006839201|]
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ethylene-responsive transcription factor CRF1 [Amborella trichopoda]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AP2 smart00380
DNA-binding domain in plant proteins such as APETALA2 and EREBPs;
125-187 2.92e-31

DNA-binding domain in plant proteins such as APETALA2 and EREBPs;


:

Pssm-ID: 197689  Cd Length: 64  Bit Score: 111.97  E-value: 2.92e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 586678484   125 KFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAKVYDNAAIQLRGPGAPTNFSPPPAD 187
Cdd:smart00380   1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63
Apc13p super family cl05422
Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 251-311 3.13e-03

Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc13p.


The actual alignment was detected with superfamily member pfam05839:

Pssm-ID: 310437  Cd Length: 89  Bit Score: 36.40  E-value: 3.13e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 586678484  251 FSPEKLPffPDDLEFSPEYLPDLWPEDfEEFLVDDFLADFGDRR--VLERSPIWSDLEDEKLE 311
Cdd:pfam05839  22 WRKDRLP--PDDVAVPMPHLQPVNPED-EEDVVPDPEADNGIQKetQKEQEPAWTDLALEELM 81
 
Name Accession Description Interval E-value
AP2 smart00380
DNA-binding domain in plant proteins such as APETALA2 and EREBPs;
125-187 2.92e-31

DNA-binding domain in plant proteins such as APETALA2 and EREBPs;


Pssm-ID: 197689  Cd Length: 64  Bit Score: 111.97  E-value: 2.92e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 586678484   125 KFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAKVYDNAAIQLRGPGAPTNFSPPPAD 187
Cdd:smart00380   1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63
AP2 cd00018
DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP ...
 124-181 2.56e-30

DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.


Pssm-ID: 237985  Cd Length: 61  Bit Score: 109.28  E-value: 2.56e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 586678484 124 KKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAKVYDNAAIQLRGPGAPTNF 181
Cdd:cd00018    1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58
AP2 pfam00847
AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription ...
 125-174 3.52e-10

AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.


Pssm-ID: 425904  Cd Length: 52  Bit Score: 54.95  E-value: 3.52e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 586678484  125 KFRGVRQRP-WGKWAAEIRDPARRV--RLWLGTYDTaEEAAKVYDNAAIQLRG 174
Cdd:pfam00847   1 KIRGVRYDKkWGRWVAEWSENGKRRkkRFSLGKYGT-EEAKRAAIEARKKLEG 52
Apc13p pfam05839
Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 251-311 3.13e-03

Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc13p.


Pssm-ID: 310437  Cd Length: 89  Bit Score: 36.40  E-value: 3.13e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 586678484  251 FSPEKLPffPDDLEFSPEYLPDLWPEDfEEFLVDDFLADFGDRR--VLERSPIWSDLEDEKLE 311
Cdd:pfam05839  22 WRKDRLP--PDDVAVPMPHLQPVNPED-EEDVVPDPEADNGIQKetQKEQEPAWTDLALEELM 81
 
Name Accession Description Interval E-value
AP2 smart00380
DNA-binding domain in plant proteins such as APETALA2 and EREBPs;
125-187 2.92e-31

DNA-binding domain in plant proteins such as APETALA2 and EREBPs;


Pssm-ID: 197689  Cd Length: 64  Bit Score: 111.97  E-value: 2.92e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 586678484   125 KFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAKVYDNAAIQLRGPGAPTNFSPPPAD 187
Cdd:smart00380   1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD 63
AP2 cd00018
DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP ...
 124-181 2.56e-30

DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.


Pssm-ID: 237985  Cd Length: 61  Bit Score: 109.28  E-value: 2.56e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 586678484 124 KKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAKVYDNAAIQLRGPGAPTNF 181
Cdd:cd00018    1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58
AP2 pfam00847
AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription ...
 125-174 3.52e-10

AP2 domain; This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.


Pssm-ID: 425904  Cd Length: 52  Bit Score: 54.95  E-value: 3.52e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 586678484  125 KFRGVRQRP-WGKWAAEIRDPARRV--RLWLGTYDTaEEAAKVYDNAAIQLRG 174
Cdd:pfam00847   1 KIRGVRYDKkWGRWVAEWSENGKRRkkRFSLGKYGT-EEAKRAAIEARKKLEG 52
Apc13p pfam05839
Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 251-311 3.13e-03

Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc13p.


Pssm-ID: 310437  Cd Length: 89  Bit Score: 36.40  E-value: 3.13e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 586678484  251 FSPEKLPffPDDLEFSPEYLPDLWPEDfEEFLVDDFLADFGDRR--VLERSPIWSDLEDEKLE 311
Cdd:pfam05839  22 WRKDRLP--PDDVAVPMPHLQPVNPED-EEDVVPDPEADNGIQKetQKEQEPAWTDLALEELM 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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