PgaD family protein similar to Escherichia coli poly-beta-1,6-N-acetyl-D-glucosamine (PGA) biosynthesis protein PgaD that is required for the synthesis of PGA, a biofilm adhesin polysaccharide, possibly by assisting the glycosyltransferase PgaC in the polymerization of PGA
poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD; Members of this protein family ...
18-158
3.01e-56
poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD; Members of this protein family are PgaD, essential to the production of poly-beta-1,6-N-acetyl-D-glucosamine (PGA). This cytoplasmic membrane protein appears to be an auxiliary subunit to the PGA synthase, PgaC (TIGR03937). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
:
Pssm-ID: 188455 Cd Length: 141 Bit Score: 174.49 E-value: 3.01e-56
poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD; Members of this protein family ...
18-158
3.01e-56
poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD; Members of this protein family are PgaD, essential to the production of poly-beta-1,6-N-acetyl-D-glucosamine (PGA). This cytoplasmic membrane protein appears to be an auxiliary subunit to the PGA synthase, PgaC (TIGR03937). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Pssm-ID: 188455 Cd Length: 141 Bit Score: 174.49 E-value: 3.01e-56
PgaD-like protein; This family includes the PgaD protein from E. coli. The homopolymer ...
21-153
5.30e-22
PgaD-like protein; This family includes the PgaD protein from E. coli. The homopolymer poly-beta-1,6-N-acetyl-D-glucosamine (beta-1,6-GlcNAc; PGA) serves as an adhesin for the maintenance of biofilm structural stability in eubacteria. The pgaABCD operon is required for its synthesis and export. It has been shown that PgaD is essential for this process.
Pssm-ID: 433633 Cd Length: 148 Bit Score: 87.16 E-value: 5.30e-22
poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD; Members of this protein family ...
18-158
3.01e-56
poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD; Members of this protein family are PgaD, essential to the production of poly-beta-1,6-N-acetyl-D-glucosamine (PGA). This cytoplasmic membrane protein appears to be an auxiliary subunit to the PGA synthase, PgaC (TIGR03937). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
Pssm-ID: 188455 Cd Length: 141 Bit Score: 174.49 E-value: 3.01e-56
PgaD-like protein; This family includes the PgaD protein from E. coli. The homopolymer ...
21-153
5.30e-22
PgaD-like protein; This family includes the PgaD protein from E. coli. The homopolymer poly-beta-1,6-N-acetyl-D-glucosamine (beta-1,6-GlcNAc; PGA) serves as an adhesin for the maintenance of biofilm structural stability in eubacteria. The pgaABCD operon is required for its synthesis and export. It has been shown that PgaD is essential for this process.
Pssm-ID: 433633 Cd Length: 148 Bit Score: 87.16 E-value: 5.30e-22
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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