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Conserved domains on  [gi|5835987|ref|NP_008750|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Vidua chalybeata]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-172 1.07e-37

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 127.17  E-value: 1.07e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987     1 MMEFVLFLGLLFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987    81 TWTDWGVVGY--GFGMGLVVMVGLVVSGVFGLLADVGTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYvvGFVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 5835987   159 ELVRGLSRGAIRAV 172
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-172 1.07e-37

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 127.17  E-value: 1.07e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987     1 MMEFVLFLGLLFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987    81 TWTDWGVVGY--GFGMGLVVMVGLVVSGVFGLLADVGTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYvvGFVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 5835987   159 ELVRGLSRGAIRAV 172
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
19-92 1.58e-07

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 47.88  E-value: 1.58e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5835987     19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL-AADPYPETWTDWGVVGYGF 92
Cdd:pfam00499   3 VVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALL 77
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-172 1.07e-37

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 127.17  E-value: 1.07e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987     1 MMEFVLFLGLLFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987    81 TWTDWGVVGY--GFGMGLVVMVGLVVSGVFGLLADVGTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYvvGFVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 5835987   159 ELVRGLSRGAIRAV 172
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 19-172 2.02e-35

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 121.40  E-value: 2.02e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987    19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPETWTDWGVVGYGFGMGLVV 98
Cdd:MTH00138  19 VASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPESWGSWSVLGYVVGYLVGV 98

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5835987    99 MVGLVVSGVFGLLADVGTVNGAGLLSV-RVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVLELVRGLSRGAIRAV 172
Cdd:MTH00138  99 VLAAGLFWGGWYEGSWVVVDELKEFSVlRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLELTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 19-172 1.42e-33

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 116.87  E-value: 1.42e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987    19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPETWTDWGVVGYGFGMGLVV 98
Cdd:MTH00065  19 VASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPEAWGSWSVLVYVLFYLLLL 98

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5835987    99 MVGLVVSGVFGLLADVGTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVLELVRGLSRGAIRAV 172
Cdd:MTH00065  99 IVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEVTRGLSRGSLRAV 172
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-172 2.22e-17

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 74.64  E-value: 2.22e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987     1 MMEFVLFLGLLFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987    81 TWTDWGVVGYGFGMGLVVMVGLVVSGVFGLLADVGTVNGAGLLSVrvdfSGAAVLYSEGAGFLLIGGWGLLLTLFVVLEL 160
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVDEANNLDL----SGVSDLYSRGFFLLLLGGVVLFLVLFVVLEL 156

                        170
                 ....*....|..
gi 5835987   161 VRGLSRGAIRAV 172
Cdd:MTH00214 157 VRGLSRGALRVV 168
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-163 3.20e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 69.45  E-value: 3.20e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987     1 MMEFVLFLGLLFALGGLAVASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987    81 TWTD----WG------VVGYGFGMGLVVMVGLVVSGVFGLLADVGTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGL 150
Cdd:MTH00109  82 TWVSnkvvLGalllglLMELLLVLYVLKDDEVEVVFNFNGLGDWVIYDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                        170
                 ....*....|...
gi 5835987   151 LLTLFVVLELVRG 163
Cdd:MTH00109 162 FIGVFVIIEITRG 174
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 24-171 1.96e-12

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 61.46  E-value: 1.96e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835987    24 SPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSLAADPYPetwtdwGVVGYGFGMGLVVMVGLV 103
Cdd:MTH00045  22 SPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYP------SVSNLGEVLVLSLLLSLW 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5835987   104 VSGVFGLLadVGTVNGAGLLSVRVDFSGAAVLYSEGAGFLLIGGWGLLLTLFVVLELVRGLSRGAIRA 171
Cdd:MTH00045  96 VFISFDNF--LELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVISFGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
19-92 1.58e-07

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 47.88  E-value: 1.58e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5835987     19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL-AADPYPETWTDWGVVGYGF 92
Cdd:pfam00499   3 VVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALL 77
ND6 MTH00021
NADH dehydrogenase subunit 6; Validated
 19-73 1.21e-03

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 214401 [Multi-domain]  Cd Length: 188  Bit Score: 37.78  E-value: 1.21e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 5835987    19 VASNPSPYYGVVGLVVAAIAGGGWLVSLGVSFVSLMLVMVYLGGMLVVFVYSVSL 73
Cdd:MTH00021  13 VISALNPVHSIFWLVVVFVNSAVFFILLGLDFLALMFLIIYVGAIAILFLFVIML 67
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 49-74 1.32e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 37.48  E-value: 1.32e-03
                         10        20
                 ....*....|....*....|....*.
gi 5835987    49 SFVSLMLVMVYLGGMLVVFVYSVSLA 74
Cdd:MTH00166  46 FWFSYILFLIFLGGMLVLFIYITSLA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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