unknown protein [Oryza sativa Japonica Group]
Protein Classification
FBD-associated F-box protein( domain architecture ID 18135529)
FBD-associated F-box protein may function as the substrate-recognition component of an SCF (Skp1-Cullin-F-box protein) ubiquitin-protein ligase that is involved in ubiquitin-dependent degradation; may also contain leucine-rich repeats
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| FBD | pfam08387 | FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it ... |
401-435 | 1.71e-05 | ||
FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. : Pssm-ID: 462458 Cd Length: 45 Bit Score: 41.93 E-value: 1.71e-05
|
||||||
| F-box_SF super family | cl45894 | F-box domain superfamily; This short domain is commonly found at the N-terminus of various ... |
35-68 | 1.92e-05 | ||
F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures. The actual alignment was detected with superfamily member cd22162: Pssm-ID: 459239 Cd Length: 46 Bit Score: 41.80 E-value: 1.92e-05
|
||||||
| Name | Accession | Description | Interval | E-value | ||
| FBD | pfam08387 | FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it ... |
401-435 | 1.71e-05 | ||
FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Pssm-ID: 462458 Cd Length: 45 Bit Score: 41.93 E-value: 1.71e-05
|
||||||
| F-box_AtSKIP3-like | cd22162 | F-box domain found in Arabidopsis thaliana SKP1-interacting partner 3 (AtSKIP3) and similar ... |
35-68 | 1.92e-05 | ||
F-box domain found in Arabidopsis thaliana SKP1-interacting partner 3 (AtSKIP3) and similar proteins; AtSKIP3, also called F-box protein SKIP3, F-box protein PP2-B9, or protein PHLOEM PROTEIN 2-LIKE B9, is a component of SCF (SKP1-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It interacts with SKP1A/ASK1. This subfamily also includes many other Arabidopsis thaliana protein PHLOEM PROTEIN 2-LIKE proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438933 Cd Length: 46 Bit Score: 41.80 E-value: 1.92e-05
|
||||||
| F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
35-69 | 4.64e-03 | ||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 34.82 E-value: 4.64e-03
|
||||||
| FBOX | smart00256 | A Receptor for Ubiquitination Targets; |
38-69 | 8.45e-03 | ||
A Receptor for Ubiquitination Targets; Pssm-ID: 197608 Cd Length: 41 Bit Score: 33.95 E-value: 8.45e-03
|
||||||
| Name | Accession | Description | Interval | E-value | ||
| FBD | pfam08387 | FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it ... |
401-435 | 1.71e-05 | ||
FBD; This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Pssm-ID: 462458 Cd Length: 45 Bit Score: 41.93 E-value: 1.71e-05
|
||||||
| F-box_AtSKIP3-like | cd22162 | F-box domain found in Arabidopsis thaliana SKP1-interacting partner 3 (AtSKIP3) and similar ... |
35-68 | 1.92e-05 | ||
F-box domain found in Arabidopsis thaliana SKP1-interacting partner 3 (AtSKIP3) and similar proteins; AtSKIP3, also called F-box protein SKIP3, F-box protein PP2-B9, or protein PHLOEM PROTEIN 2-LIKE B9, is a component of SCF (SKP1-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It interacts with SKP1A/ASK1. This subfamily also includes many other Arabidopsis thaliana protein PHLOEM PROTEIN 2-LIKE proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438933 Cd Length: 46 Bit Score: 41.80 E-value: 1.92e-05
|
||||||
| F-box_AtFBL13-like | cd22160 | F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) ... |
35-69 | 4.20e-04 | ||
F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) and similar proteins; AtARP13 and AtARP25 belong to the largest subfamily of plant F-box proteins, F-box/LRR-repeat protein (FBLs). It contains tandem leucine-rich repeats (LRRs). Like other F-box proteins, they may be components of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438931 Cd Length: 36 Bit Score: 37.66 E-value: 4.20e-04
|
||||||
| F-box | pfam00646 | F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
35-69 | 4.64e-03 | ||
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 425796 Cd Length: 43 Bit Score: 34.82 E-value: 4.64e-03
|
||||||
| FBOX | smart00256 | A Receptor for Ubiquitination Targets; |
38-69 | 8.45e-03 | ||
A Receptor for Ubiquitination Targets; Pssm-ID: 197608 Cd Length: 41 Bit Score: 33.95 E-value: 8.45e-03
|
||||||
| Blast search parameters | ||||
|
