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Conserved domains on  [gi|578836791|ref|XP_006724137|]
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ubl carboxyl-terminal hydrolase 18 isoform X1 [Homo sapiens]

Protein Classification

ubiquitin carboxyl-terminal hydrolase( domain architecture ID 10115580)

ubiquitin carboxyl-terminal hydrolase is a C19 family peptidase that catalyzes the thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the-terminal Gly of ubiquitin, a 76-residue protein attached to proteins as an intracellular targeting signal

CATH:  2.20.210.10
EC:  3.4.19.12
Gene Ontology:  GO:0004843|GO:0016579
SCOP:  4003158

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
60-294 8.46e-48

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 160.34  E-value: 8.46e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  60 LFVQHDAAQLYLKLWNLIKDQITDVHLVER--------LQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLfDVDSKP 131
Cdd:cd02257   19 FSEQQDAHEFLLFLLDKLHEELKKSSKRTSdssslkslIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPL-PVKGLP 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 132 LKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQvLKLTHLPQTLTIHLMRFSI-RNSQTRKICHSLYFPQSLDFSQI 210
Cdd:cd02257   98 QVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKR-LKIKKLPPVLIIHLKRFSFnEDGTKEKLNTKVSFPLELDLSPY 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 211 LPMKRESCDAEEQSGgQYELFAVIAHVG-MADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNpnyhwQETAY 289
Cdd:cd02257  177 LSEGEKDSDSDNGSY-KYELVAVVVHSGtSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSL-----SSSAY 250

                 ....*
gi 578836791 290 LLVYM 294
Cdd:cd02257  251 ILFYE 255
 
Name Accession Description Interval E-value
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
60-294 8.46e-48

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 160.34  E-value: 8.46e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  60 LFVQHDAAQLYLKLWNLIKDQITDVHLVER--------LQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLfDVDSKP 131
Cdd:cd02257   19 FSEQQDAHEFLLFLLDKLHEELKKSSKRTSdssslkslIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPL-PVKGLP 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 132 LKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQvLKLTHLPQTLTIHLMRFSI-RNSQTRKICHSLYFPQSLDFSQI 210
Cdd:cd02257   98 QVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKR-LKIKKLPPVLIIHLKRFSFnEDGTKEKLNTKVSFPLELDLSPY 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 211 LPMKRESCDAEEQSGgQYELFAVIAHVG-MADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNpnyhwQETAY 289
Cdd:cd02257  177 LSEGEKDSDSDNGSY-KYELVAVVVHSGtSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSL-----SSSAY 250

                 ....*
gi 578836791 290 LLVYM 294
Cdd:cd02257  251 ILFYE 255
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
4-293 3.97e-42

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 147.20  E-value: 3.97e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791    4 DFTRILKRITVPRGADEQRRSVPF--QMLLLLEKMQD-SRQKAVRPLELAYCLQKCNVPL--FVQHDAAQLYLKLWNLIK 78
Cdd:pfam00443  24 PFRDYLLRISPLSEDSRYNKDINLlcALRDLFKALQKnSKSSSVSPKMFKKSLGKLNPDFsgYKQQDAQEFLLFLLDGLH 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791   79 DQITDVHLVER---LQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDVDS-KPLKTLEDALHCFFQPRELSSKSKC 154
Cdd:pfam00443 104 EDLNGNHSTENeslITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAeLKTASLQICFLQFSKLEELDDEEKY 183
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  155 FCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSqilPMKRESCDAEEQSGGQYELFAVI 234
Cdd:pfam00443 184 YCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLS---RYLAEELKPKTNNLQDYRLVAVV 260
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 578836791  235 AHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTygnpnyhwqETAYLLVY 293
Cdd:pfam00443 261 VHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEETAVLS---------SSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
134-293 3.67e-23

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 99.57  E-value: 3.67e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 134 TLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFP-QSLDFSQILP 212
Cdd:COG5560  676 TLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPiDDLDLSGVEY 755
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 213 MKrescdaeEQSGGQYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQctygnpnyhwQETAYLLV 292
Cdd:COG5560  756 MV-------DDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSV----------TSSAYVLF 818

                 .
gi 578836791 293 Y 293
Cdd:COG5560  819 Y 819
 
Name Accession Description Interval E-value
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
60-294 8.46e-48

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 160.34  E-value: 8.46e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  60 LFVQHDAAQLYLKLWNLIKDQITDVHLVER--------LQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLfDVDSKP 131
Cdd:cd02257   19 FSEQQDAHEFLLFLLDKLHEELKKSSKRTSdssslkslIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPL-PVKGLP 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 132 LKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQvLKLTHLPQTLTIHLMRFSI-RNSQTRKICHSLYFPQSLDFSQI 210
Cdd:cd02257   98 QVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKR-LKIKKLPPVLIIHLKRFSFnEDGTKEKLNTKVSFPLELDLSPY 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 211 LPMKRESCDAEEQSGgQYELFAVIAHVG-MADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNpnyhwQETAY 289
Cdd:cd02257  177 LSEGEKDSDSDNGSY-KYELVAVVVHSGtSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSL-----SSSAY 250

                 ....*
gi 578836791 290 LLVYM 294
Cdd:cd02257  251 ILFYE 255
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
4-293 3.97e-42

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 147.20  E-value: 3.97e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791    4 DFTRILKRITVPRGADEQRRSVPF--QMLLLLEKMQD-SRQKAVRPLELAYCLQKCNVPL--FVQHDAAQLYLKLWNLIK 78
Cdd:pfam00443  24 PFRDYLLRISPLSEDSRYNKDINLlcALRDLFKALQKnSKSSSVSPKMFKKSLGKLNPDFsgYKQQDAQEFLLFLLDGLH 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791   79 DQITDVHLVER---LQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDVDS-KPLKTLEDALHCFFQPRELSSKSKC 154
Cdd:pfam00443 104 EDLNGNHSTENeslITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAeLKTASLQICFLQFSKLEELDDEEKY 183
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  155 FCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSqilPMKRESCDAEEQSGGQYELFAVI 234
Cdd:pfam00443 184 YCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYNRSTWEKLNTEVEFPLELDLS---RYLAEELKPKTNNLQDYRLVAVV 260
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 578836791  235 AHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTygnpnyhwqETAYLLVY 293
Cdd:pfam00443 261 VHSGSLSSGHYIAYIKAYENNRWYKFDDEKVTEVDEETAVLS---------SSAYILFY 310
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
8-298 1.16e-39

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 141.24  E-value: 1.16e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791   8 ILKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLV 87
Cdd:cd02659   31 VYSIPPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQE 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  88 ERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPlslfdVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQ 167
Cdd:cd02659  111 GLIKNLFGGKLVNYIICKECPHESEREEYFLDLQ-----VAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEK 185
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 168 VLKLTHLPQTLTIHLMRFS--IRNSQTRKICHSLYFPQSLDFSQIL---PMKRESCDAEEQSGG-QYELFAVIAHVGMAD 241
Cdd:cd02659  186 GVCFKKLPPVLTLQLKRFEfdFETMMRIKINDRFEFPLELDMEPYTekgLAKKEGDSEKKDSESyIYELHGVLVHSGDAH 265
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578836791 242 SGHYCVYIRNAVDGKWFCFNDSNICLVSWEDI-----QCTYGNPNYHWQET-------AYLLVYMKMEC 298
Cdd:cd02659  266 GGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAeeecfGGEETQKTYDSGPRafkrttnAYMLFYERKSP 334
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1-293 4.27e-35

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 129.08  E-value: 4.27e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791   1 MNVDFTRILKRITVPR--GADEQRRSVPF-------QMLLLLEKMQDSRQKAVRPLELAYCLQKCNVplfVQHDAAQLYL 71
Cdd:cd02668   20 MNLEFRKAVYECNSTEdaELKNMPPDKPHepqtiidQLQLIFAQLQFGNRSVVDPSGFVKALGLDTG---QQQDAQEFSK 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  72 KLWNLIKD---QITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLfdvdsKPLKTLEDALHCFFQPREL 148
Cdd:cd02668   97 LFLSLLEAklsKSKNPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQL-----KGHKTLEECIDEFLKEEQL 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 149 SSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI-RNSQTRKICHSlyfpqSLDFSQILPMKRESCDAEEQSgGQ 227
Cdd:cd02668  172 TGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFdRKTGAKKKLNA-----SISFPEILDMGEYLAESDEGS-YV 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 228 YELFAVIAHVGM-ADSGHYCVYIRNAVDGKWFCFNDSNIclVSWEDIQCTYGN-------------PNYHWQETAYLLVY 293
Cdd:cd02668  246 YELSGVLIHQGVsAYSGHYIAHIKDEQTGEWYKFNDEDV--EEMPGKPLKLGNsedpakprkseikKGTHSSRTAYMLVY 323
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
63-293 1.64e-31

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 117.00  E-value: 1.64e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  63 QHDAAQLYLKLWNLIKDQITDVhlverLQALYtirvKDSLICVDCAMESSRNSSMLTLPLSLFDVDSKPLK-TLEDALHC 141
Cdd:cd02674   22 QQDAQEFLLFLLDGLHSIIVDL-----FQGQL----KSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKvTLEDCLRL 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 142 FFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFP-QSLDfsqilpMKRESCDA 220
Cdd:cd02674   93 FTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPlNDLD------LTPYVDTR 166
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578836791 221 EEQSGGQYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNIclvswediqcTYGNPNYHWQETAYLLVY 293
Cdd:cd02674  167 SFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRV----------TKVSESSVVSSSAYILFY 229
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
104-294 4.63e-25

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 101.58  E-value: 4.63e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 104 CVDCAMESSRNSSMLTLPLSLFDVDSkplktLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLM 183
Cdd:cd02661  138 CLNCKHVSNTYDPFLDLSLDIKGADS-----LEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLK 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 184 RFSirNSQTRKICHSLYFPQSLDFSQILPMKRESCDaeeqsggQYELFAVIAHVGM-ADSGHYCVYIRNAvDGKWFCFND 262
Cdd:cd02661  213 RFS--NFRGGKINKQISFPETLDLSPYMSQPNDGPL-------KYKLYAVLVHSGFsPHSGHYYCYVKSS-NGKWYNMDD 282
                        170       180       190
                 ....*....|....*....|....*....|..
gi 578836791 263 SNICLVSWEDIqctygnpnyhWQETAYLLVYM 294
Cdd:cd02661  283 SKVSPVSIETV----------LSQKAYILFYI 304
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
134-293 3.67e-23

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 99.57  E-value: 3.67e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 134 TLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFP-QSLDFSQILP 212
Cdd:COG5560  676 TLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPiDDLDLSGVEY 755
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 213 MKrescdaeEQSGGQYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQctygnpnyhwQETAYLLV 292
Cdd:COG5560  756 MV-------DDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSV----------TSSAYVLF 818

                 .
gi 578836791 293 Y 293
Cdd:COG5560  819 Y 819
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
8-293 7.46e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 93.16  E-value: 7.46e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791   8 ILKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKC--------NVPLFVQHDAAQLYLKLWNLIKd 79
Cdd:cd02657   27 ALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAfpqfaekqNQGGYAQQDAEECWSQLLSVLS- 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  80 QITDVHLVER--LQALYTIRVKDSLICVDC-AMESSRNSSMLTLPLSLFDvdSKPLKTLEDALHcffqpRELSSKSKCFC 156
Cdd:cd02657  106 QKLPGAGSKGsfIDQLFGIELETKMKCTESpDEEEVSTESEYKLQCHISI--TTEVNYLQDGLK-----KGLEEEIEKHS 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 157 ENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI-RNSQTR-KICHSLYFPQSLDFSQILPMKrescdaeeqsgGQYELFAVI 234
Cdd:cd02657  179 PTLGRDAIYTKTSRISRLPKYLTVQFVRFFWkRDIQKKaKILRKVKFPFELDLYELCTPS-----------GYYELVAVI 247
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 235 AHVGM-ADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHwqeTAYLLVY 293
Cdd:cd02657  248 THQGRsADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWH---IAYILLY 304
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
99-293 3.02e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 88.97  E-value: 3.02e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  99 KDSLICVDCAMESSRNSSMLTLPLSLfDVDSKP-----------LKTLEDALHCFFQPRELSSKSKCfCENCGKKTRGKQ 167
Cdd:cd02660  132 QSSVTCQRCGGVSTTVDPFLDLSLDI-PNKSTPswalgesgvsgTPTLSDCLDRFTRPEKLGDFAYK-CSGCGSTQEATK 209
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 168 VLKLTHLPQTLTIHLMRFS-IRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGGQ--YELFAVIAHVGMADSGH 244
Cdd:cd02660  210 QLSIKKLPPVLCFQLKRFEhSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDytYDLFAVVVHKGTLDTGH 289
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 578836791 245 YCVYIRNAvDGKWFCFNDSNICLVSWEDIQctygnpnyhwQETAYLLVY 293
Cdd:cd02660  290 YTAYCRQG-DGQWFKFDDAMITRVSEEEVL----------KSQAYLLFY 327
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
104-293 9.23e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 86.98  E-value: 9.23e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 104 CVDCAMESSRNSSMLTLPlslfdVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLM 183
Cdd:cd02663  123 CLTCETVSSRDETFLDLS-----IDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLK 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 184 RFSIRNSQTR--KICHSLYFPQSLDfsqilpMKRESCDAEEQSgGQYELFAVIAHVGM-ADSGHYCVYIRnaVDGKWFCF 260
Cdd:cd02663  198 RFKYDEQLNRyiKLFYRVVFPLELR------LFNTTDDAENPD-RLYELVAVVVHIGGgPNHGHYVSIVK--SHGGWLLF 268
                        170       180       190
                 ....*....|....*....|....*....|...
gi 578836791 261 NDSNICLVSWEDIQCTYGNPNYhwQETAYLLVY 293
Cdd:cd02663  269 DDETVEKIDENAVEEFFGDSPN--QATAYVLFY 299
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
27-293 3.12e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 85.13  E-value: 3.12e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  27 FQMLLLLEKMQDSRQKavRPLELAYCLQKCNVPL--FVQHDAAQLylkLWNLIKDQITDVHLVERLQALYTIrvkdslIC 104
Cdd:cd02667   15 MQNLSQTPALRELLSE--TPKELFSQVCRKAPQFkgYQQQDSHEL---LRYLLDGLRTFIDSIFGGELTSTI------MC 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 105 VDCAMESSRNSSMLTLPLSLFDvDSKPLKTLEDALHCFFQPRELSSKSKCFCENCgkkTRGKQVLKLTHLPQTLTIHLMR 184
Cdd:cd02667   84 ESCGTVSLVYEPFLDLSLPRSD-EIKSECSIESCLKQFTEVEILEGNNKFACENC---TKAKKQYLISKLPPVLVIHLKR 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 185 FS-IRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSggQYELFAVIAHVGMADSGHYCVYI--RNAVD------- 254
Cdd:cd02667  160 FQqPRSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSV--LYRLYGVVEHSGTMRSGHYVAYVkvRPPQQrlsdltk 237
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 578836791 255 ------------GKWFCFNDSNICLVSWEDIQctygnpnyhwQETAYLLVY 293
Cdd:cd02667  238 skpaadeagpgsGQWYYISDSDVREVSLEEVL----------KSEAYLLFY 278
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1-293 4.51e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 85.62  E-value: 4.51e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791   1 MNVDFTRILKRITVPRGADEQrrSVPFQMLLLLEKMQDSRQKAVRPLElaYCLQKCNVPLFV---QHDAAQlYLKlwnli 77
Cdd:cd02664   20 MAKDFRRQVLSLNLPRLGDSQ--SVMKKLQLLQAHLMHTQRRAEAPPD--YFLEASRPPWFTpgsQQDCSE-YLR----- 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  78 kdqitdvHLVERLQAL----YTIRVKDSLICVDCAMESSRNSSMLTLPLSLfdvdskplKTLEDALHCFFQPRELSSKSK 153
Cdd:cd02664   90 -------YLLDRLHTLiekmFGGKLSTTIRCLNCNSTSARTERFRDLDLSF--------PSVQDLLNYFLSPEKLTGDNQ 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 154 CFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSIrNSQT---RKICHSLYFPQSLDfsqiLPMKRES------------- 217
Cdd:cd02664  155 YYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSY-DQKThvrEKIMDNVSINEVLS----LPVRVESkssesplekkeee 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 218 ---CDAEEQSGGQYELFAVIAHVGMA-DSGHYCVYIRNAVD--------------------GKWFCFNDSNICLVSWEDI 273
Cdd:cd02664  230 sgdDGELVTRQVHYRLYAVVVHSGYSsESGHYFTYARDQTDadstgqecpepkdaeendesKNWYLFNDSRVTFSSFESV 309
                        330       340
                 ....*....|....*....|..
gi 578836791 274 Q--CTYGNPNyhwqeTAYLLVY 293
Cdd:cd02664  310 QnvTSRFPKD-----TPYILFY 326
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
5-297 5.94e-18

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 84.15  E-value: 5.94e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791    5 FTRILKRIT--VPRGADEQRRSVPFQMLLLLEKMQDSRQkAVRPLELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQIT 82
Cdd:COG5077   214 FIAKFRKDVygIPTDHPRGRDSVALALQRLFYNLQTGEE-PVDTTELTRSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMR 292
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791   83 DVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLfdvdsKPLKTLEDALHCFFQPRELSSKSKCFCENCGKK 162
Cdd:COG5077   293 GTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNV-----KGMKNLQESFRRYIQVETLDGDNRYNAEKHGLQ 367
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  163 TRGKQVLkLTHLPQTLTIHLMRFSI--RNSQTRKICHSLYFPQSLDfsqILPMKRESCDAEEQSGGQYELFAVIAHVGMA 240
Cdd:COG5077   368 DAKKGVI-FESLPPVLHLQLKRFEYdfERDMMVKINDRYEFPLEID---LLPFLDRDADKSENSDAVYVLYGVLVHSGDL 443
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578836791  241 DSGHYCVYIRNAVDGKWFCFNDSNICLVS-WEDIQCTYG----------NPN-YHWQETAYLLVYMKME 297
Cdd:COG5077   444 HEGHYYALLKPEKDGRWYKFDDTRVTRATeKEVLEENFGgdhpykdkirDHSgIKRFMSAYMLVYLRKS 512
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
37-293 1.85e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 78.13  E-value: 1.85e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  37 QDSRQKAVRPLELAYCLQKcNVPLFV---QHDAAQLYLKLWNLI--------KDQITDV---HLVERLQALYTIRVKdsl 102
Cdd:cd02658   72 NDPYQVGIKPSMFKALIGK-GHPEFStmrQQDALEFLLHLIDKLdresfknlGLNPNDLfkfMIEDRLECLSCKKVK--- 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 103 icvdcamESSRNSSMLTLPLSLFDVDSKPLK-------TLEDALHCFFQPRELSSkskcFCENCGKKTRGKQVLKLTHLP 175
Cdd:cd02658  148 -------YTSELSEILSLPVPKDEATEKEEGelvyepvPLEDCLKAYFAPETIED----FCSTCKEKTTATKTTGFKTFP 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 176 QTLTIHLMRFSIRNSQTrkichslyfPQSLDFSQILPmkrescdaEEQSGGQYELFAVIAHVGM-ADSGHYCVYIRNAVD 254
Cdd:cd02658  217 DYLVINMKRFQLLENWV---------PKKLDVPIDVP--------EELGPGKYELIAFISHKGTsVHSGHYVAHIKKEID 279
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 578836791 255 --GKWFCFNDSNICLVSwediqctygNPNYHwQETAYLLVY 293
Cdd:cd02658  280 geGKWVLFNDEKVVASQ---------DPPEM-KKLGYIYFY 310
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
5-293 8.22e-16

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 76.47  E-value: 8.22e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791   5 FTRILKRITVPRGADEQRRSVpfqmLLLLEKMQDSRQKAVRPLELAYCLQKCNvPLF---VQHDAAQLYLKLWNLIKDqi 81
Cdd:cd02671   49 FKHGLKHLVSLISSVEQLQSS----FLLNPEKYNDELANQAPRRLLNALREVN-PMYegyLQHDAQEVLQCILGNIQE-- 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  82 tdvhLVERL-QALYTIRVKdsliCVDCAMESSRNSSML---------TLPLSLFDVDSKP-----LKTLEDALHCFFQPR 146
Cdd:cd02671  122 ----LVEKDfQGQLVLRTR----CLECETFTERREDFQdisvpvqesELSKSEESSEISPdpkteMKTLKWAISQFASVE 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 147 ELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQT------RKIchSLYFPQSLDFSqilpmkrescdA 220
Cdd:cd02671  194 RIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFdcygglSKV--NTPLLTPLKLS-----------L 260
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578836791 221 EEQSGGQ----YELFAVIAHVGMA-DSGHYCVYIRnavdgkWFCFNDSNICLVSWEDIQcTYGNPNYHWQETAYLLVY 293
Cdd:cd02671  261 EEWSTKPkndvYRLFAVVMHSGATiSSGHYTAYVR------WLLFDDSEVKVTEEKDFL-EALSPNTSSTSTPYLLFY 331
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
62-293 6.11e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 69.70  E-value: 6.11e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  62 VQHDAAQLYLklwnlikdqitdvHLVERLQALYT----IRVKDSLICVDCAMESS-RNSSMLTLPLSLFDVDSKPLKTLE 136
Cdd:cd02662   33 EQQDAHELFQ-------------VLLETLEQLLKfpfdGLLASRIVCLQCGESSKvRYESFTMLSLPVPNQSSGSGTTLE 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 137 DALHCFFQPRELSSKSkcfCENCGkktrgkqvLKLTHLPQTLTIHLMR--FSIRNSQTRKICHsLYFPQSLdfsqilpmk 214
Cdd:cd02662  100 HCLDDFLSTEIIDDYK---CDRCQ--------TVIVRLPQILCIHLSRsvFDGRGTSTKNSCK-VSFPERL--------- 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 215 rescdaeeqSGGQYELFAVIAHVGMADSGHYCVY--------------------IRNAVDGKWFCFNDSNICLVSWEDIq 274
Cdd:cd02662  159 ---------PKVLYRLRAVVVHYGSHSSGHYVCYrrkplfskdkepgsfvrmreGPSSTSHPWWRISDTTVKEVSESEV- 228
                        250
                 ....*....|....*....
gi 578836791 275 ctygnpnyHWQETAYLLVY 293
Cdd:cd02662  229 --------LEQKSAYMLFY 239
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
172-294 5.27e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 66.81  E-value: 5.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 172 THLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLdfsQILPmkrescdaeeqsggqYELFAVIAHVGMADSGHYCVYIRN 251
Cdd:cd02665  126 TELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII---QQVP---------------YELHAVLVHEGQANAGHYWAYIYK 187
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 578836791 252 AVDGKWFCFNDSNICLVSWEDIQ----CTYGNPnyhwqeTAYLLVYM 294
Cdd:cd02665  188 QSRQEWEKYNDISVTESSWEEVErdsfGGGRNP------SAYCLMYI 228
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
123-293 2.07e-12

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 65.98  E-value: 2.07e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 123 SLFDV-DSKP-------LKTLEDALHCF--FQPRELSSKSKcfcENCGKKTRGKQVLKLT--HLPQTLTIHLMRFSIRNS 190
Cdd:COG5533  119 DWFDIiIELPdqtwvnnLKTLQEFIDNMeeLVDDETGVKAK---ENEELEVQAKQEYEVSfvKLPKILTIQLKRFANLGG 195
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 191 QtRKICHSL--YFPQSLDFSQILPMKREscdaeeqsgGQYELFAVIAHVGMADSGHYCVYIRnaVDGKWFCFNDSNICLV 268
Cdd:COG5533  196 N-QKIDTEVdeKFELPVKHDQILNIVKE---------TYYDLVGFVLHQGSLEGGHYIAYVK--KGGKWEKANDSDVTPV 263
                        170       180
                 ....*....|....*....|....*
gi 578836791 269 SWEDIQctygNPNyhwQETAYLLVY 293
Cdd:COG5533  264 SEEEAI----NEK---AKNAYLYFY 281
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
90-262 2.48e-11

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 63.06  E-value: 2.48e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791   90 LQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSL----FDVDSKPLKT-----LEDALHcffqpRELSSKSkcFCENCG 160
Cdd:pfam13423 128 LEQLFGIDAETTIRCSNCGHESVRESSTHVLDLIYprkpSSNNKKPPNQtfssiLKSSLE-----RETTTKA--WCEKCK 200
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  161 KKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQTRKICHslYFPQSLDfsqilpMKRESCDAEEQSGGQYELFAVIAHVGMA 240
Cdd:pfam13423 201 RYQPLESRRTVRNLPPVLSLNAALTNEEWRQLWKTPG--WLPPEIG------LTLSDDLQGDNEIVKYELRGVVVHIGDS 272
                         170       180       190
                  ....*....|....*....|....*....|
gi 578836791  241 D-SGHYCVYIRNAV-------DGKWFCFND 262
Cdd:pfam13423 273 GtSGHLVSFVKVADseledptESQWYLFND 302
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
20-293 2.01e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 54.80  E-value: 2.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  20 EQRRSVPF--QMLLLLEKMQDSRQKAVRPL-ELAY----------CLQKCnvpLFvQHDAAQLYLKLWNLIKDQITDVHL 86
Cdd:cd02666   59 ELQRSNQFvyELRSLFNDLIHSNTRSVTPSkELAYlalrqqdvteCIDNV---LF-QLEVALEPISNAFAGPDTEDDKEQ 134
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  87 VERLQALYTIRVKDSLicVDCAME--SSRNSSM---LTLPLSLFDV--DSKPL---KTLEDALHCFFQPRELSS---KSK 153
Cdd:cd02666  135 SDLIKRLFSGKTKQQL--VPESMGnqPSVRTKTerfLSLLVDVGKKgrEIVVLlepKDLYDALDRYFDYDSLTKlpqRSQ 212
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 154 CFCENCGKKTRGKQVLKLTHLPQTL-TIHLMRFSIRNSQTRKICHSLYFPQSLDFsqilpmKRESCDAEEQSGGqYELFA 232
Cdd:cd02666  213 VQAQLAQPLQRELISMDRYELPSSIdDIDELIREAIQSESSLVRQAQNELAELKH------EIEKQFDDLKSYG-YRLHA 285
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 578836791 233 VIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDI-QCTYGNpnyhwQETAYLLVY 293
Cdd:cd02666  286 VFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVfLFTLGN-----TATPYFLVY 342
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
63-273 2.08e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 50.99  E-value: 2.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791  63 QHDAAQLYLKLWNLIKD--------QITDVHLVERLQALYTIR--VKDSLICVDCAMESSRNSSMLTLPLSLFDVDskpL 132
Cdd:cd02673   33 QQDAHEFLLTLLEAIDDimqvnrtnVPPSNIEIKRLNPLEAFKytIESSYVCIGCSFEENVSDVGNFLDVSMIDNK---L 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 133 KTLEDALHCFFQPRELSSK-SKCFCENCGKKTRgkqvlkLTHLPQTLTIHLMRFSIRNSQtrkichSLYFPQSldfsqil 211
Cdd:cd02673  110 DIDELLISNFKTWSPIEKDcSSCKCESAISSER------IMTFPECLSINLKRYKLRIAT------SDYLKKN------- 170
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578836791 212 pmkRESCDAEEQSGGQYELFAVIAHVG-MADSGHYCVYIRNAVDG-KWFCFNDSNICLVSWEDI 273
Cdd:cd02673  171 ---EEIMKKYCGTDAKYSLVAVICHLGeSPYDGHYIAYTKELYNGsSWLYCSDDEIRPVSKNDV 231
Peptidase_C19M cd02669
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
117-265 1.05e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239134 [Multi-domain]  Cd Length: 440  Bit Score: 46.54  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 117 MLTL---PLSLF-DVDSK---PLKTLEDALHCFFQPRELSSKskcfcencGKKTRgkqvLKLTHLPQTLTIHLMRFSIRN 189
Cdd:cd02669  280 LLTLdlpPPPLFkDGNEEniiPQVPLKQLLKKYDGKTETELK--------DSLKR----YLISRLPKYLIFHIKRFSKNN 347
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578836791 190 SQTRKICHSLYFPQS-LDFSQILPmkreSCDAEEQSGGQYELFAVIAHVGM-ADSGHYCVYIRNAVDGKWFCFNDSNI 265
Cdd:cd02669  348 FFKEKNPTIVNFPIKnLDLSDYVH----FDKPSLNLSTKYNLVANIVHEGTpQEDGTWRVQLRHKSTNKWFEIQDLNV 421
Peptidase_C19P cd02672
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
110-262 1.94e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239137 [Multi-domain]  Cd Length: 268  Bit Score: 42.11  E-value: 1.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 110 ESSRNSSMLTLPLSLfDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSIRN 189
Cdd:cd02672   92 GTSRNSVSLLYTLSL-PLGSTKTSKESTFLQLLKRSLDLEKVTKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVT 170
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578836791 190 SQTRKICHSLYfPQSLDFSQILPMKRESCDAEEQSGGQ-----YELFAVIAHVGMADSG-HYCV---YIRNAVD-GKWFC 259
Cdd:cd02672  171 NGEFDDINVVL-PSGKVMQNKVSPKAIDHDKLVKNRGQesiykYELVGYVCEINDSSRGqHNVVfviKVNEESThGRWYL 249

                 ...
gi 578836791 260 FND 262
Cdd:cd02672  250 FND 252
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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