|
Name |
Accession |
Description |
Interval |
E-value |
| UBA_NACAD |
cd14416 |
UBA-like domain found in nascent polypeptide-associated complex subunit alpha ... |
1306-1349 |
7.34e-24 |
|
UBA-like domain found in nascent polypeptide-associated complex subunit alpha domain-containing protein 1 (NACAD); The subfamily includes a group of uncharacterized proteins mainly found in vertebrates. Their biological function remains unknown, but they show high sequence similarity to the nascent polypeptide-associated complex (NAC) subunit alpha (NACA) that exists as part of several protein complexes playing a role in proliferation, apoptosis, or degradation. Like NACA, NACAD contains an NAC domain and a C-terminal ubiquitin-associated (UBA) domain.
Pssm-ID: 270599 Cd Length: 44 Bit Score: 95.14 E-value: 7.34e-24
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 578813371 1306 DEAGLELRDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELTM 1349
Cdd:cd14416 1 DETGLEVRDIELVMAQANVSRAKAVRALRHNNNDIVNAIMELTM 44
|
|
| NAC_NACA |
cd22054 |
nascent polypeptide-associated complex (NAC), alpha subunit; The nascent ... |
1212-1259 |
1.28e-23 |
|
nascent polypeptide-associated complex (NAC), alpha subunit; The nascent polypeptide-associated complex (NAC) is a complex, conserved from archaea to human, that plays an important role in co translational targeting of nascent polypeptides to the endoplasmic reticulum (ER). In eukaryotes, under physiological conditions, the complex is a stable heterodimer of the NAC alpha subunit and the NAC beta subunit, also known as basal transcription factor 3b (BTF3b). An imbalance of the relative concentrations has been observed in diseases, like Alzheimer's, AIDS, and ulcerative colitis. NAC alpha consists of a NAC domain, also present in BTF3, and a unique C-terminal ubiquitin-associated (UBA) domain.
Pssm-ID: 409233 Cd Length: 48 Bit Score: 94.55 E-value: 1.28e-23
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 578813371 1212 GLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDL 1259
Cdd:cd22054 1 GLKPVPGVTRVTIKKSKNILFVINKPDVYKSPGSDTYIVFGEAKIEDL 48
|
|
| NAC |
pfam01849 |
NAC domain; |
1203-1256 |
4.88e-21 |
|
NAC domain;
Pssm-ID: 426474 Cd Length: 54 Bit Score: 87.52 E-value: 4.88e-21
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 578813371 1203 KARKAMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKI 1256
Cdd:pfam01849 1 KLQKALKKLGLKPIPGVEEVNIFKSDGKVLVFNNPKVQKSPGSNTYVVFGEAEE 54
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
575-1032 |
1.66e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 69.58 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 575 SGRKPVAAATIVPRQAKEDLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDS----VMTPPLPLQD 650
Cdd:PHA03247 2597 RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSrprrARRLGRAAQA 2676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 651 TELSSAPKPVAAATLVSQQAEegLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATLVSQQAEEGLTLPQDSAMTPPLPLQD 730
Cdd:PHA03247 2677 SSPPQRPRRRAARPTVGSLTS--LADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP 2754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 731 TDLSSAPKPVAAATLVSQQAEEGltLPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQD 810
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAA--GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 811 TDLSSAPKPvaaatiVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATPVSQQaeegLTLPQDSAMTPPLPLQD 890
Cdd:PHA03247 2833 SAQPTAPPP------PPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR----LARPAVSRSTESFALPP 2902
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 891 TDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGC-APGTEPVatmAQQEV 969
Cdd:PHA03247 2903 DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGAlVPGRVAV---PRFRV 2979
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578813371 970 GEALGPRPAPEEKNAALPTVPEPA------ALDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPE 1032
Cdd:PHA03247 2980 PQPAPSREAPASSTPPLTGHSLSRvsswasSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSE 3048
|
|
| EGD2 |
COG1308 |
Transcription factor homologous to NACalpha-BTF3 [Transcription]; |
1202-1348 |
2.41e-08 |
|
Transcription factor homologous to NACalpha-BTF3 [Transcription];
Pssm-ID: 440919 [Multi-domain] Cd Length: 116 Bit Score: 53.31 E-value: 2.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1202 KKARKAMSKLGLRQIQ-GVTRITIQ-KSKNIlfVIAKPDV--FKSPASDTYVVFGEAKIEDLsqqvhKAAAEKFKVPSEp 1277
Cdd:COG1308 8 RKMKQMMKQMGIKVEEiDAEEVIIRtKDKEI--VFENPQVtvMKAQGQETYQIVGEPEEVEK-----GAEEAEVEIPEE- 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578813371 1278 salvpesaprprvrleckeeeeeeeeevdeaglelrDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:COG1308 80 ------------------------------------DVELVAEQTGVSEEEAREALEEANGDLAEAILKLE 114
|
|
| HYPK_UBA |
pfam19026 |
HYPK UBA domain; This entry represents the UBA domain found at the C-terminus of the HYPK ... |
1314-1348 |
2.61e-08 |
|
HYPK UBA domain; This entry represents the UBA domain found at the C-terminus of the HYPK protein and its homologs. This domain in HYPK mediates a protein interaction with the Naa15 C-terminus.
Pssm-ID: 436907 Cd Length: 41 Bit Score: 51.02 E-value: 2.61e-08
10 20 30
....*....|....*....|....*....|....*
gi 578813371 1314 DIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:pfam19026 7 DVELIMTELEVSKAKAERALREHGGDVVAALRALL 41
|
|
| nac |
PRK06369 |
nascent polypeptide-associated complex protein; Reviewed |
1202-1348 |
9.77e-08 |
|
nascent polypeptide-associated complex protein; Reviewed
Pssm-ID: 235786 [Multi-domain] Cd Length: 115 Bit Score: 51.79 E-value: 9.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1202 KKARKAMSKLGLRQIQ-GVTRITIQ-KSKNIlfVIAKPDV--FKSPASDTYVVFGEAKiedlsqQVHKAAAEKFKVPSEp 1277
Cdd:PRK06369 8 RKMKQMMKQMGIDVEElDVEEVIIRlKDKEI--VFENPQVtvMDAQGQKTYQIVGEPE------EVEKEAEKEVEIPEE- 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578813371 1278 salvpesaprprvrleckeeeeeeeeevdeaglelrDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:PRK06369 79 ------------------------------------DIELVAEQTGVSEEEARKALEEANGDLAEAILKLS 113
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
897-1200 |
1.89e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.93 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 897 PKPVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALGPR 976
Cdd:PHA03307 73 PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 977 PAPEEKNAALPTVPEPAALDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASGAGEEIAEALSRPGREACLEA 1056
Cdd:PHA03307 153 PAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1057 RAHTGDGAKPDSPqketlevenqqegGLKPLAQEHGPSPKVASMDAKDLALQILPPCQVPPPSGPQSPAGPQGLSAPEQQ 1136
Cdd:PHA03307 233 GASSSDSSSSESS-------------GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPS 299
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1137 EDEDSLEEDSPRALGSGQHSDSHGESSA------ELDEQDILAPQTVQCPAQAPAGGSEETIAKAKQSRS 1200
Cdd:PHA03307 300 PSSPGSGPAPSSPRASSSSSSSRESSSSstssssESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRP 369
|
|
| TIGR00264 |
TIGR00264 |
alpha-NAC-related protein; This hypothetical protein is found so far only in the Archaea. Its ... |
1314-1347 |
2.97e-04 |
|
alpha-NAC-related protein; This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator. [Unknown function, General]
Pssm-ID: 272988 [Multi-domain] Cd Length: 116 Bit Score: 41.86 E-value: 2.97e-04
10 20 30
....*....|....*....|....*....|....
gi 578813371 1314 DIELVMAQANVSRAKAVRALRDNHSDIVNAIMEL 1347
Cdd:TIGR00264 81 DIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| UBA_NACAD |
cd14416 |
UBA-like domain found in nascent polypeptide-associated complex subunit alpha ... |
1306-1349 |
7.34e-24 |
|
UBA-like domain found in nascent polypeptide-associated complex subunit alpha domain-containing protein 1 (NACAD); The subfamily includes a group of uncharacterized proteins mainly found in vertebrates. Their biological function remains unknown, but they show high sequence similarity to the nascent polypeptide-associated complex (NAC) subunit alpha (NACA) that exists as part of several protein complexes playing a role in proliferation, apoptosis, or degradation. Like NACA, NACAD contains an NAC domain and a C-terminal ubiquitin-associated (UBA) domain.
Pssm-ID: 270599 Cd Length: 44 Bit Score: 95.14 E-value: 7.34e-24
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 578813371 1306 DEAGLELRDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELTM 1349
Cdd:cd14416 1 DETGLEVRDIELVMAQANVSRAKAVRALRHNNNDIVNAIMELTM 44
|
|
| NAC_NACA |
cd22054 |
nascent polypeptide-associated complex (NAC), alpha subunit; The nascent ... |
1212-1259 |
1.28e-23 |
|
nascent polypeptide-associated complex (NAC), alpha subunit; The nascent polypeptide-associated complex (NAC) is a complex, conserved from archaea to human, that plays an important role in co translational targeting of nascent polypeptides to the endoplasmic reticulum (ER). In eukaryotes, under physiological conditions, the complex is a stable heterodimer of the NAC alpha subunit and the NAC beta subunit, also known as basal transcription factor 3b (BTF3b). An imbalance of the relative concentrations has been observed in diseases, like Alzheimer's, AIDS, and ulcerative colitis. NAC alpha consists of a NAC domain, also present in BTF3, and a unique C-terminal ubiquitin-associated (UBA) domain.
Pssm-ID: 409233 Cd Length: 48 Bit Score: 94.55 E-value: 1.28e-23
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 578813371 1212 GLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDL 1259
Cdd:cd22054 1 GLKPVPGVTRVTIKKSKNILFVINKPDVYKSPGSDTYIVFGEAKIEDL 48
|
|
| NAC |
pfam01849 |
NAC domain; |
1203-1256 |
4.88e-21 |
|
NAC domain;
Pssm-ID: 426474 Cd Length: 54 Bit Score: 87.52 E-value: 4.88e-21
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 578813371 1203 KARKAMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKI 1256
Cdd:pfam01849 1 KLQKALKKLGLKPIPGVEEVNIFKSDGKVLVFNNPKVQKSPGSNTYVVFGEAEE 54
|
|
| UBA_NACA_NACP1 |
cd14415 |
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and ... |
1305-1348 |
5.90e-20 |
|
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and putative NACA-like protein (NACP1); NACA, also called NAC-alpha or alpha-NAC, together with BTF3, also called Beta-NAC, form the nascent polypeptide-associated complex (NAC) which is a cytosolic protein chaperone that contacts the nascent polypeptide chains as they emerge from the ribosome. Besides, NACA has a high affinity for nucleic acids and exists as part of several protein complexes playing a role in proliferation, apoptosis, or degradation. It is a cytokine-modulated specific transcript in the human TF-1 erythroleukemic cell line. It also acts as a transcriptional co-activator in osteoblasts by binding to phosphorylated c-Jun, a member of the activator-protein-1 (AP-1) family. Moreover, NACA binds to and regulates the adaptor protein Fas-associated death domain (FADD). In addition, NACA functions as a novel factor participating in the positive regulation of human erythroid-cell differentiation. Both NACA and BTF3 harbor an NAC domain that mediates the dimerization of the two subunits. By contrast, NACA has an extra ubiquitin-associated (UBA) domain in the C-terminus. In addition to NACA, the family includes NACP1, also called Alpha-NAC pseudogene 1 or NAC-alpha pseudogene 1. The biological function of NACP1 remains unclear.
Pssm-ID: 270598 Cd Length: 46 Bit Score: 84.23 E-value: 5.90e-20
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 578813371 1305 VDEAGLELRDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:cd14415 3 VDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 46
|
|
| UBA_NAC_euk |
cd14358 |
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its ... |
1313-1348 |
2.64e-18 |
|
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and its homologs mainly found in eukaryotes; The subfamily contains nascent polypeptide-associated complex subunit alpha (NACA), putative NACA-like protein (NACP1), nascent polypeptide-associated complex subunit alpha domain-containing protein 1 (NACAD), and similar proteins. NACA, also called NAC-alpha or Alpha-NAC, together with BTF3, also called Beta-NAC, form the nascent polypeptide-associated complex (NAC) which is a cytosolic protein chaperone that contacts the nascent polypeptide chains as they emerge from the ribosome. Besides, NACA has a high affinity for nucleic acids and exists as part of several protein complexes playing a role in proliferation, apoptosis, or degradation. It is a cytokine-modulated specific transcript in the human TF-1 erythroleukemic cell line. It also acts as a transcriptional co-activator in osteoblasts by binding to phosphorylated c-Jun, a member of the activator-protein-1 (AP-1) family. Moreover, NACA binds to and regulates the adaptor protein Fas-associated death domain (FADD). In addition, NACA functions as a novel factor participating in the positive regulation of human erythroid-cell differentiation. The biological function of NACP1 (also called Alpha-NAC pseudogene 1 or NAC-alpha pseudogene 1) and NACAD remain unclear. All family members contain an NAC domain and a C-terminal ubiquitin-associated (UBA) domain.
Pssm-ID: 270541 [Multi-domain] Cd Length: 37 Bit Score: 79.20 E-value: 2.64e-18
10 20 30
....*....|....*....|....*....|....*.
gi 578813371 1313 RDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:cd14358 2 KDIELVMQQANVSRAKAVKALKENDNDIVNAIMELT 37
|
|
| UBA_NAC_like |
cd14278 |
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and ... |
1314-1348 |
1.90e-13 |
|
UBA-like domain found in nascent polypeptide-associated complex subunit alpha (NACA) and similar proteins; The family contains nascent polypeptide-associated complex subunit alpha (NACA), putative NACA-like protein (NACP1), nascent polypeptide-associated complex subunit alpha domain-containing protein 1 (NACAD), and similar proteins found in archaea and bacteria. NACA, also called NAC-alpha or Alpha-NAC, together with BTF3, also called Beta-NAC, form the nascent polypeptide-associated complex (NAC) which is a cytosolic protein chaperone that contacts the nascent polypeptide chains as they emerge from the ribosome. Besides, NACA has a high affinity for nucleic acids and exists as part of several protein complexes playing a role in proliferation, apoptosis, or degradation. It is a cytokine-modulated specific transcript in the human TF-1 erythroleukemic cell line. It also acts as a transcriptional co-activator in osteoblasts by binding to phosphorylated c-Jun, a member of the activator-protein-1 (AP-1) family. Moreover, NACA binds to and regulates the adaptor protein Fas-associated death domain (FADD). In addition, NACA functions as a novel factor participating in the positive regulation of human erythroid-cell differentiation. The biological function of NACP1 (also called Alpha-NAC pseudogene 1 or NAC-alpha pseudogene 1) and NACAD remain unclear. The family also includes huntingtin-interacting protein K (HYPK), also called Huntingtin yeast partner K or Huntingtin yeast two-hybrid protein K. It is an intrinsically unstructured Huntingtin (HTT)-interacting protein with chaperone-like activity. It may be involved in regulating cell growth, cell cycle, unfolded protein response and cell death. All members in this family contain an ubiquitin-associated (UBA) domain.
Pssm-ID: 270464 [Multi-domain] Cd Length: 37 Bit Score: 65.58 E-value: 1.90e-13
10 20 30
....*....|....*....|....*....|....*
gi 578813371 1314 DIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:cd14278 3 DIELVMSQTGVSREEAIKALRENKGDVVDAILELT 37
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
575-1032 |
1.66e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 69.58 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 575 SGRKPVAAATIVPRQAKEDLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDS----VMTPPLPLQD 650
Cdd:PHA03247 2597 RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSrprrARRLGRAAQA 2676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 651 TELSSAPKPVAAATLVSQQAEegLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATLVSQQAEEGLTLPQDSAMTPPLPLQD 730
Cdd:PHA03247 2677 SSPPQRPRRRAARPTVGSLTS--LADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGP 2754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 731 TDLSSAPKPVAAATLVSQQAEEGltLPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQD 810
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAA--GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 811 TDLSSAPKPvaaatiVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATPVSQQaeegLTLPQDSAMTPPLPLQD 890
Cdd:PHA03247 2833 SAQPTAPPP------PPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR----LARPAVSRSTESFALPP 2902
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 891 TDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGC-APGTEPVatmAQQEV 969
Cdd:PHA03247 2903 DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGAlVPGRVAV---PRFRV 2979
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578813371 970 GEALGPRPAPEEKNAALPTVPEPA------ALDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPE 1032
Cdd:PHA03247 2980 PQPAPSREAPASSTPPLTGHSLSRvsswasSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSE 3048
|
|
| NAC |
cd21114 |
NAC domain; This family contains the NAC domain, named after the nascent ... |
1216-1258 |
8.37e-10 |
|
NAC domain; This family contains the NAC domain, named after the nascent polypeptide-associated complex (NAC) whose subunits contain NAC domains. In eukaryotes, the NAC complex, which plays an important role in co-translational targeting of nascent polypeptides to endoplasmic reticulum (ER), consists of 2 subunits: NAC alpha and a shortened splice variant of the basal transcription factor 3 (BTF3; also called BTF3b or NAC beta). The full length BTF3a protein excites transcription.
Pssm-ID: 409232 Cd Length: 43 Bit Score: 55.39 E-value: 8.37e-10
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 578813371 1216 IQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIED 1258
Cdd:cd21114 1 IPGIEEVTMVMEDGSVIVFTMPKVQASLASNVFVVTGEATREQ 43
|
|
| EGD2 |
COG1308 |
Transcription factor homologous to NACalpha-BTF3 [Transcription]; |
1202-1348 |
2.41e-08 |
|
Transcription factor homologous to NACalpha-BTF3 [Transcription];
Pssm-ID: 440919 [Multi-domain] Cd Length: 116 Bit Score: 53.31 E-value: 2.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1202 KKARKAMSKLGLRQIQ-GVTRITIQ-KSKNIlfVIAKPDV--FKSPASDTYVVFGEAKIEDLsqqvhKAAAEKFKVPSEp 1277
Cdd:COG1308 8 RKMKQMMKQMGIKVEEiDAEEVIIRtKDKEI--VFENPQVtvMKAQGQETYQIVGEPEEVEK-----GAEEAEVEIPEE- 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578813371 1278 salvpesaprprvrleckeeeeeeeeevdeaglelrDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:COG1308 80 ------------------------------------DVELVAEQTGVSEEEAREALEEANGDLAEAILKLE 114
|
|
| HYPK_UBA |
pfam19026 |
HYPK UBA domain; This entry represents the UBA domain found at the C-terminus of the HYPK ... |
1314-1348 |
2.61e-08 |
|
HYPK UBA domain; This entry represents the UBA domain found at the C-terminus of the HYPK protein and its homologs. This domain in HYPK mediates a protein interaction with the Naa15 C-terminus.
Pssm-ID: 436907 Cd Length: 41 Bit Score: 51.02 E-value: 2.61e-08
10 20 30
....*....|....*....|....*....|....*
gi 578813371 1314 DIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:pfam19026 7 DVELIMTELEVSKAKAERALREHGGDVVAALRALL 41
|
|
| nac |
PRK06369 |
nascent polypeptide-associated complex protein; Reviewed |
1202-1348 |
9.77e-08 |
|
nascent polypeptide-associated complex protein; Reviewed
Pssm-ID: 235786 [Multi-domain] Cd Length: 115 Bit Score: 51.79 E-value: 9.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1202 KKARKAMSKLGLRQIQ-GVTRITIQ-KSKNIlfVIAKPDV--FKSPASDTYVVFGEAKiedlsqQVHKAAAEKFKVPSEp 1277
Cdd:PRK06369 8 RKMKQMMKQMGIDVEElDVEEVIIRlKDKEI--VFENPQVtvMDAQGQKTYQIVGEPE------EVEKEAEKEVEIPEE- 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578813371 1278 salvpesaprprvrleckeeeeeeeeevdeaglelrDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:PRK06369 79 ------------------------------------DIELVAEQTGVSEEEARKALEEANGDLAEAILKLS 113
|
|
| UBA_AeNAC |
cd14359 |
UBA-like domain found in archaeal nascent polypeptide-associated complex homolog from ... |
1314-1348 |
3.87e-07 |
|
UBA-like domain found in archaeal nascent polypeptide-associated complex homolog from Methanothermobacter marburgensis (AeNAC) and similar proteins; AeNAC is a functional archaeal homolog of eukaryotic nascent polypeptide-associated complex (NAC). Both AeNAC and eukaryotic NAC function as the cytosolic chaperone that can bind to ribosomal RNA, interact with the nascent polypeptide chains as they emerge from the ribosome, and assist in post-translational processes. They all contain a NAC domain and an ubiquitin-associated (UBA) domain in the C-terminus. However, unlike eukaryotic NAC, AeNAC forms a ribosome associated homodimer, but not heterodimer. The NAC domain of AeNAC is responsible for the homodimer formation.
Pssm-ID: 270542 [Multi-domain] Cd Length: 40 Bit Score: 47.60 E-value: 3.87e-07
10 20 30
....*....|....*....|....*....|....*
gi 578813371 1314 DIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:cd14359 6 DIELVMEQTGVSREEARKALEESGGDLAEAILKLT 40
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
656-1058 |
1.33e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.40 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 656 APKPVAAAtlVSQQAEEGLTLPQDSamTPPLPLQDTDLSSAPKPVAAATlvsqqaeegltlPQDSAMTPPLPLQDTDLSS 735
Cdd:PHA03247 2574 APRPSEPA--VTSRARRPDAPPQSA--RPRAPVDDRGDPRGPAPPSPLP------------PDTHAPDPPPPSPSPAANE 2637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 736 APKPVAAATLVSQQAEEGLTLPQDS----------AMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLT-LPQDSAMTP 804
Cdd:PHA03247 2638 PDPHPPPTVPPPERPRDDPAPGRVSrprrarrlgrAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTpEPAPHALVS 2717
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 805 PLPLQD-TDLSSAPKPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMT 883
Cdd:PHA03247 2718 ATPLPPgPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 884 PPLPLQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTGPTSGPEPLAVA--------TPQTLQAEAGCA 955
Cdd:PHA03247 2798 LPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApggdvrrrPPSRSPAAKPAA 2877
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 956 PGTEPVATMAQQEVGEALGPRPAPEEKNAALPTVPEPAALDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPAS 1035
Cdd:PHA03247 2878 PARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG 2957
|
410 420
....*....|....*....|...
gi 578813371 1036 GAGEEIAEALSrPGREACLEARA 1058
Cdd:PHA03247 2958 AVPQPWLGALV-PGRVAVPRFRV 2979
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
525-941 |
2.09e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.55 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 525 PQPSQEGISEILGQESVTAEKLPTPqeetsLTLCPDSPQNLKEEGGLDLPSGRKPVAAATIVPRQAKEDLTLPQDSAMTP 604
Cdd:PHA03247 2712 PHALVSATPLPPGPAAARQASPALP-----AAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 605 PLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDSVMTPPLPLQDTELSSAPKPVAAATLVSqqaeegltLPQDSAMTP 684
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS--------LPLGGSVAP 2858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 685 PLPLQDTDLSSAPKPVAAATlvSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATLVSQQAEEGLTLPQDSAMTP 764
Cdd:PHA03247 2859 GGDVRRRPPSRSPAAKPAAP--ARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP 2936
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 765 PLPlqdtdlsSAPKPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDSAMTP 844
Cdd:PHA03247 2937 PRP-------QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWAS 3009
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 845 PLPLqdtDLSSAPKPVAaatpvsqqAEEGLTLPQDSAMTPPLPLQDTDlsSAPKPVAAATPVSQQAEEGLTLPQDSAMTA 924
Cdd:PHA03247 3010 SLAL---HEETDPPPVS--------LKQTLWPPDDTEDSDADSLFDSD--SERSDLEALDPLPPEPHDPFAHEPDPATPE 3076
|
410
....*....|....*..
gi 578813371 925 PLPLQDTGPTSGPEPLA 941
Cdd:PHA03247 3077 AGARESPSSQFGPPPLS 3093
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
847-1037 |
1.36e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.41 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 847 PLQDTDLSSAPKPVAAATPVSQQAEEGLTlPQDSAMTPPLPLQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPL 926
Cdd:PRK12323 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAA-PAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 927 PLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALgPRPAPEEKNAALPTVPEPAALDQVQQDDPQPA 1006
Cdd:PRK12323 460 AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF-ASPAPAQPDAAPAGWVAESIPDPATADPDDAF 538
|
170 180 190
....*....|....*....|....*....|.
gi 578813371 1007 AEAGTPWAAQEDADSTLGMEALSLPEPASGA 1037
Cdd:PRK12323 539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
695-1192 |
1.37e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.62 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 695 SAPKPVAAATlVSQQAEEGLTLPQDSAM-TPPLPLQDTDLSSAPkpVAAATLVSQQAEEGLTLPQDSAMTP-PLPLQDTD 772
Cdd:PRK10263 315 PITEPVAVAA-AATTATQSWAAPVEPVTqTPPVASVDVPPAQPT--VAWQPVPGPQTGEPVIAPAPEGYPQqSQYAQPAV 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 773 LSSAP--KPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDSAMTP---PLP 847
Cdd:PRK10263 392 QYNEPlqQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEqtyQQP 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 848 LQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPLP 927
Cdd:PRK10263 472 AAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAA 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 928 LQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMA-----QQEVGEALGPRpAPEEKNAALPTVPEPAALD---QVQ 999
Cdd:PRK10263 552 VPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLAnsggpRPQVKEGIGPQ-LPRPKRIRVPTRRELASYGiklPSQ 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1000 QDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASgagEEIAEALSRPGREACLEA--RAHTGDGAKPDSPQKETLEVE 1077
Cdd:PRK10263 631 RAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELAR---QFAQTQQQRYGEQYQHDVpvNAEDADAAAEAELARQFAQTQ 707
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1078 NQQEGGLKPLAQ-----------------EHGPSPKVASMDAKDLALQILPPCQVPPPSGPQSPAGPQGL------SAPE 1134
Cdd:PRK10263 708 QQRYSGEQPAGAnpfslddfefspmkallDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQyqqpqqPVAP 787
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 578813371 1135 QQEDEDSLEEDSPRALGSGQHSDSHGESSAELDEQDILAPQTVQCPAQAPAGGSEETI 1192
Cdd:PRK10263 788 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTL 845
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
897-1200 |
1.89e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.93 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 897 PKPVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALGPR 976
Cdd:PHA03307 73 PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 977 PAPEEKNAALPTVPEPAALDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASGAGEEIAEALSRPGREACLEA 1056
Cdd:PHA03307 153 PAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1057 RAHTGDGAKPDSPqketlevenqqegGLKPLAQEHGPSPKVASMDAKDLALQILPPCQVPPPSGPQSPAGPQGLSAPEQQ 1136
Cdd:PHA03307 233 GASSSDSSSSESS-------------GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPS 299
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1137 EDEDSLEEDSPRALGSGQHSDSHGESSA------ELDEQDILAPQTVQCPAQAPAGGSEETIAKAKQSRS 1200
Cdd:PHA03307 300 PSSPGSGPAPSSPRASSSSSSSRESSSSstssssESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRP 369
|
|
| TIGR00264 |
TIGR00264 |
alpha-NAC-related protein; This hypothetical protein is found so far only in the Archaea. Its ... |
1314-1347 |
2.97e-04 |
|
alpha-NAC-related protein; This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator. [Unknown function, General]
Pssm-ID: 272988 [Multi-domain] Cd Length: 116 Bit Score: 41.86 E-value: 2.97e-04
10 20 30
....*....|....*....|....*....|....
gi 578813371 1314 DIELVMAQANVSRAKAVRALRDNHSDIVNAIMEL 1347
Cdd:TIGR00264 81 DIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
803-1164 |
3.92e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.16 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 803 TPPLPLQDTD--LSSAPKPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATP-VSQQAEEGLTLPQD 879
Cdd:PHA03307 31 AADDLLSGSQgqLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLaPASPAREGSPTPPG 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 880 SAMTPPLPLQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTG-PTSGPEPLAVATPQTLQAEAGCAPGT 958
Cdd:PHA03307 111 PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVAsDAASSRQAALPLSSPEETARAPSSPP 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 959 EPVATMAQqevGEALGPRPAPEEKNAALPTVPEPAALDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASGAG 1038
Cdd:PHA03307 191 AEPPPSTP---PAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPT 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1039 EEIAEALSRPGREACLEARAHTGDGAKPDSPQKETlevenqqeGGLKPLAQEHGPSPKVASMDAKDLALqilPPCQVPPP 1118
Cdd:PHA03307 268 RIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSS--------PGSGPAPSSPRASSSSSSSRESSSSS---TSSSSESS 336
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 578813371 1119 SGPQSPAGPQGLSAPEQQEDEDSLEEDSPRALGSGQHSDSHGESSA 1164
Cdd:PHA03307 337 RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASA 382
|
|
| UBA_HYPK |
cd14361 |
UBA-like domain found in Huntingtin-interacting protein K (HYPK) and similar proteins; HYPK, ... |
1314-1348 |
5.50e-04 |
|
UBA-like domain found in Huntingtin-interacting protein K (HYPK) and similar proteins; HYPK, also called Huntingtin yeast partner K or Huntingtin yeast two-hybrid protein K, is an intrinsically unstructured Huntingtin (HTT)-interacting protein with chaperone-like activity. It is involved in regulating cell growth, cell cycle, unfolded protein response, and cell death. All members in this subfamily contain an N-terminal ubiquitin-associated (UBA) that shows high sequence similarity with that of eukaryotic nascent polypeptide-associated complex proteins (NAC) which is one of the cytosolic chaperones that contact the nascent polypeptide chains as they emerge from the ribosome and assist in post-translational processes.
Pssm-ID: 270544 Cd Length: 41 Bit Score: 38.64 E-value: 5.50e-04
10 20 30
....*....|....*....|....*....|....*
gi 578813371 1314 DIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1348
Cdd:cd14361 7 DVELIVNELEVSKAQAERALREHNGDVVKALRALI 41
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
891-1083 |
6.04e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 44.12 E-value: 6.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 891 TDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTGPTSGPEplAVATPQTLQAEAGCAPGTEPVATMAQQEVG 970
Cdd:PRK12678 3 PSDAAATATTDTAPRARGGGLAGMKLPELRALAKQLGIKGTSGMRKGE--LIAAIKEARGGGAAAAAATPAAPAAAARRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 971 ealgPRPAPEEKNAALPTVPEPAALDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEAlslPEPASGAGEEIAEALSRPGR 1050
Cdd:PRK12678 81 ----ARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRER---GEAARRGAARKAGEGGEQPA 153
|
170 180 190
....*....|....*....|....*....|...
gi 578813371 1051 EACLEARAHTGDGAKPDSPQKETLEVENQQEGG 1083
Cdd:PRK12678 154 TEARADAAERTEEEERDERRRRGDREDRQAEAE 186
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
767-968 |
7.31e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.10 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 767 PLQDTDLSSAPKPVAAATIVSQQAEEGLTlPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDSAMTPPL 846
Cdd:PRK12323 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAA-PAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 847 PLQDTDLSSA-PKPVAAATPVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATPvsQQAEEGLTLPQDSAMTAP 925
Cdd:PRK12323 460 AAARPAAAGPrPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPA--GWVAESIPDPATADPDDA 537
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 578813371 926 LPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQE 968
Cdd:PRK12323 538 FETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
896-1112 |
1.04e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.33 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 896 APKPVAAATPVSQQAeegltlPQDSAMTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVA-TMAQQEVGEALG 974
Cdd:PRK12323 372 AGPATAAAAPVAQPA------PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlAAARQASARGPG 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 975 PRPAPEeknAALPTVPEPAALDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASGAGEEIAEALSRPGrEACL 1054
Cdd:PRK12323 446 GAPAPA---PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAA-PAGW 521
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 578813371 1055 EARAHTGDGAKPDSPQKETLEVENQQegglKPLAQEHGPSPKVASMDAKDLALQILPP 1112
Cdd:PRK12323 522 VAESIPDPATADPDDAFETLAPAPAA----APAPRAAAATEPVVAPRPPRASASGLPD 575
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
774-1019 |
1.37e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 43.30 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 774 SSAPKPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAAtiVSQQAEEGltlpqDSAMTPPLPLQdtdl 853
Cdd:PRK07003 382 APGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPA--PPATADRG-----DDAADGDAPVP---- 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 854 SSAPKPVAAATPVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTGP 933
Cdd:PRK07003 451 AKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAP 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 934 TSGPEPLAVATPqtlQAEAGCAPGTEPVATMAQQEVGEALGPRPAPEEKNAALPTVPEPAALDQVQQDDPQPAAEAGTPW 1013
Cdd:PRK07003 531 EARPPTPAAAAP---AARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGD 607
|
....*.
gi 578813371 1014 AAQEDA 1019
Cdd:PRK07003 608 APPNGA 613
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
879-1069 |
2.15e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.56 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 879 DSAMTPPLPLQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTGPTS-GPEPLAVA-TPQTLQAEAGCAP 956
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSpAPEALAAArQASARGPGGAPAP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 957 GTEPVATMAQQEVGEALGPRPAPEEKNAAlPTVPEPAALDQVQQDDPQPAAEAGTPWAAQEDADST---LGMEALSLPEP 1033
Cdd:PRK12323 451 APAPAAAPAAAARPAAAGPRPVAAAAAAA-PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDaapAGWVAESIPDP 529
|
170 180 190
....*....|....*....|....*....|....*.
gi 578813371 1034 ASGAGEEIAEALSRPGREACLEARAHTGDGAKPDSP 1069
Cdd:PRK12323 530 ATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
779-1177 |
3.28e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.90 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 779 PVAAATIVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEgltlPQDSAMTPPLPLQDTDLSSAPK 858
Cdd:PRK07764 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAP----APPSPAGNAPAGGAPSPPPAAA 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 859 PVAAATPVSQQAEEGLTLPQDSAMTPPLPlqdtdlSSAPKPVA-AATPVSQQAEEGL---------TLPQDSAMTAPLPL 928
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPAAPAP------AAAPAAPAaPAAPAGADDAATLrerwpeilaAVPKRSRKTWAILL 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 929 QD---TGPTSGPEPLAVATPqTLQAEAGCAPGTEPVATMAQQEVG--------------EALGPRPAPEEKNAALPTVPE 991
Cdd:PRK07764 536 PEatvLGVRGDTLVLGFSTG-GLARRFASPGNAEVLVTALAEELGgdwqveavvgpapgAAGGEGPPAPASSGPPEEAAR 614
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 992 PAALDQ-VQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASGAGEEIAEALSRPGREACLEARAHTGDGAKPDSPQ 1070
Cdd:PRK07764 615 PAAPAApAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1071 KETLEVENQQEGGLKPLAQEHGPSPKVASMDAKDLALQILPPCQVPPPSGPQSPAGPQGLSAPEQQEDEDSLEEDSPRAL 1150
Cdd:PRK07764 695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP 774
|
410 420 430
....*....|....*....|....*....|
gi 578813371 1151 GSGQHSD---SHGESSAELDEQDILAPQTV 1177
Cdd:PRK07764 775 PPSPPSEeeeMAEDDAPSMDDEDRRDAEEV 804
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
727-910 |
3.43e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.79 E-value: 3.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 727 PLQDTDLSSAPKPVAAATLVSQQAEEGLTlPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDSAMTPPL 806
Cdd:PRK12323 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAA-PAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 807 PLQDTDLSSA-PKPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATPvsQQAEEGLTLPQDSAMTPP 885
Cdd:PRK12323 460 AAARPAAAGPrPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPA--GWVAESIPDPATADPDDA 537
|
170 180
....*....|....*....|....*
gi 578813371 886 LPLQDTDLSSAPKPVAAATPVSQQA 910
Cdd:PRK12323 538 FETLAPAPAAAPAPRAAAATEPVVA 562
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
899-1159 |
3.45e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 41.62 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 899 PVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALGPRPA 978
Cdd:PRK08691 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDA 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 979 PEEKNAALPTVPEPAALDQVqqddpqpAAEAGTPWAAQ----EDADSTLGMEALSLPEPASGAGEEIAEALSRPGREACL 1054
Cdd:PRK08691 440 PDEAQTAAGTAQTSAKSIQT-------ASEAETPPENQvsknKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEA 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1055 EARAHTGDG-AKPDSPQKETLEVenqqegglKPLAQEHGPSPKVASMDAKDLALqilppcqvppPSGPQSPAGPQGLSAP 1133
Cdd:PRK08691 513 PAEPFYGYGfPDNDCPPEDGAEI--------PPPDWEHAAPADTAGGGADEEAE----------AGGIGGNNTPSAPPPE 574
|
250 260
....*....|....*....|....*.
gi 578813371 1134 EQQEDEDSLEEDSPRALGSGQHSDSH 1159
Cdd:PRK08691 575 FSTENWAAIVRHFARKLGAAQMPAQH 600
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
854-1062 |
3.46e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.79 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 854 SSAPKPVAAATPVSQQAEEGLTLPQDSAMTPPLPLQdtdLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPlplqdtGP 933
Cdd:PRK12323 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPA---AAAAARAVAAAPARRSPAPEALAAARQASARGP------GG 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 934 TSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGE-ALGPRPAPEEKNAALPTVPEPAALDQVQQD-DPQPAAEAGT 1011
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAApAAAPAPADDDPPPWEELPPEFASPAPAQPDaAPAGWVAESI 526
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 578813371 1012 PWAAQEDAD---STLGMEALSLPEPASGAGEEIAEALSRPGREACLEARAHTGD 1062
Cdd:PRK12323 527 PDPATADPDdafETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
737-980 |
4.07e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.59 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 737 PKPVAAATLVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSA 816
Cdd:PHA03378 676 PSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 817 PKPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATPVSQQaeegLTLPQDSAMTPPLPLQDTDLssa 896
Cdd:PHA03378 756 PPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQ----LMPRAAPGQQGPTKQILRQL--- 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 897 pkpvaaATPVSQQAEEGLTLPQDSAMTAPLPLQdtgptsgPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALGPR 976
Cdd:PHA03378 829 ------LTGGVKRGRPSLKKPAALERQAAAGPT-------PSPGSGTSDKIVQAPVFYPPVLQPIQVMRQLGSVRAAAAS 895
|
....
gi 578813371 977 PAPE 980
Cdd:PHA03378 896 TVTQ 899
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
574-750 |
4.74e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.40 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 574 PSGRKPVAAATIVPRQAKEDLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTLPQDSVMTPPLPLQDTEL 653
Cdd:PRK12323 387 PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAA 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 654 SSA-PKPVAAATLVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAAtlVSQQAEEGLTLPQDSAMTPPLPLQDTD 732
Cdd:PRK12323 467 AGPrPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAA--PAGWVAESIPDPATADPDDAFETLAPA 544
|
170
....*....|....*...
gi 578813371 733 LSSAPKPVAAATLVSQQA 750
Cdd:PRK12323 545 PAAAPAPRAAAATEPVVA 562
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
687-870 |
5.21e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.01 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 687 PLQDTDLSSAPKPVAAATLVSQQAEEGLTlPQDSAMTPPLPLQDTDLSSAPKPVAAATLVSQQAEEGLTLPQDSAMTPPL 766
Cdd:PRK12323 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAA-PAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 767 PLQDTDLSSA-PKPVAAATIVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAAtiVSQQAEEGLTLPQDSAMTPP 845
Cdd:PRK12323 460 AAARPAAAGPrPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAA--PAGWVAESIPDPATADPDDA 537
|
170 180
....*....|....*....|....*
gi 578813371 846 LPLQDTDLSSAPKPVAAATPVSQQA 870
Cdd:PRK12323 538 FETLAPAPAAAPAPRAAAATEPVVA 562
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
758-966 |
6.79e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 40.74 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 758 QDSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLtlpqdSAMTPPLPLQDTDLSSAPKPVAAATIVSQQAEEGLTlp 837
Cdd:PRK12727 73 PQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMI-----AAMALRQPVSVPRQAPAAAPVRAASIPSPAAQALAH-- 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 838 qdSAMTPPLPLQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTPPLPlqdtdlsSAPKPVAAATPVSQQAEEGLTLP 917
Cdd:PRK12727 146 --AAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVP-------AIAAALAAHAAYAQDDDEQLDDD 216
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 578813371 918 QDSaMTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQ 966
Cdd:PRK12727 217 GFD-LDDALPQILPPAALPPIVVAPAAPAALAAVAAAAPAPQNDEELKQ 264
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
922-1138 |
6.95e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 40.63 E-value: 6.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 922 MTAPLPLQDTGPTSGPEPLAVATPQTLQAEAGCAPGTEPVATMAQQEVGEALGPRPAPEEKNAALPTVPEPAALDQVQQd 1001
Cdd:PRK12323 360 MLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQ- 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1002 dpqpaAEAGTPWAAQEDADSTLGMEALSLPEPASGAGEEIAEALSRPGREACLEARAHTGDGAKP--DSPQKETLEVENQ 1079
Cdd:PRK12323 439 -----ASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPweELPPEFASPAPAQ 513
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 578813371 1080 QEGGLKPLAQEHGPSPKVASMDAkDLALQILPPCQVPPPSGPQSPAGPQGLSAPEQQED 1138
Cdd:PRK12323 514 PDAAPAGWVAESIPDPATADPDD-AFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
843-1058 |
7.40e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.74 E-value: 7.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 843 TPPLPLQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATPVSQQAEegltlPQDSAM 922
Cdd:PRK07764 599 GPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGD-----GWPAKA 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 923 TAPLPLQDTGPTSGPEPLAVATPQTLQAEAGcAPGTEPVATMAQQEVGEALGPRPAPEEKNAALPTVPEPAALDQVQQDD 1002
Cdd:PRK07764 674 GGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA-PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA 752
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 578813371 1003 PQPAAEAGTPWAAQEDADSTlGMEALSLPEPASGAGEEIAEALSRPGREACLEARA 1058
Cdd:PRK07764 753 GAPAQPPPPPAPAPAAAPAA-APPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAME 807
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
856-1028 |
8.68e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.60 E-value: 8.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 856 APKPVAAATPVSQqAEEGLTLPQDSAMTPPLPLQDTDLSSAPKPVAAATPVSQQAEEGLTLPQDSAMTAPLPLQDTGPTS 935
Cdd:PRK07003 382 APGARAAAAVGAS-AVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASAD 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 936 GPEPLAVATPQTLQAEAGCAPGTEPVATMAQQE-----VGEALGPRPAPEEKNAALPTVPEPAAldqvqQDDPQPAAEAG 1010
Cdd:PRK07003 461 SRCDERDAQPPADSGSASAPASDAPPDAAFEPApraaaPSAATPAAVPDARAPAAASREDAPAA-----AAPPAPEARPP 535
|
170
....*....|....*...
gi 578813371 1011 TPWAAQEDADSTLGMEAL 1028
Cdd:PRK07003 536 TPAAAAPAARAGGAAAAL 553
|
|
| PHA03321 |
PHA03321 |
tegument protein VP11/12; Provisional |
884-1133 |
9.45e-03 |
|
tegument protein VP11/12; Provisional
Pssm-ID: 223041 [Multi-domain] Cd Length: 694 Bit Score: 40.33 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 884 PPLPLQDTDLSSAPKPVAAATPVS-----QQAEEGLTLPQDSAMTAPLPLQDtGPTSGPEPLAVATPQTLQAEAGCAPGT 958
Cdd:PHA03321 433 APAPRRDNDPPPPPRARPGSTPACarrarAQRARDAGPEYVDPLGALRRLPA-GAAPPPEPAAAPSPATYYTRMGGGPPR 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 959 EPVATMAQQEVGEALGPRPAPEeknaalptvPEPAALDQVQQDDPQPAAEAGTPWAAQEDADSTLGMEALSLPEPASGAG 1038
Cdd:PHA03321 512 LPPRNRATETLRPDWGPPAAAP---------PEQMEDPYLEPDDDRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSE 582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578813371 1039 EEIAEALSRPGREACLEARAHTGDGAKP--DSPQKETLEVENQQEG-GLKPLaqehGPSPKVASMDAKDLALQILPPCQV 1115
Cdd:PHA03321 583 EPVYEEIPTPRVYQNPLPRPMEGAGEPPdlDAPTSPWVEEENPIYGwGDSPL----FSPPPAARFPPPDPALSPEPPALP 658
|
250 260
....*....|....*....|
gi 578813371 1116 P--PPSGPQSPAGPQGLSAP 1133
Cdd:PHA03321 659 AhrPRPGALAPDGPANLAAL 678
|
|
| |
