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Conserved domains on  [gi|578176977|gb|EUL37310|]
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motility protein B [Enterobacter hormaechei subsp. hoffmannii UCI 50]

Protein Classification

flagellar motor protein MotB( domain architecture ID 11483518)

flagellar motor protein MotB (motility protein B) is required for the rotation of the flagellar motor

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
motB PRK09041
motility protein MotB;
1-309 0e+00

motility protein MotB;


:

Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 529.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977   1 MKNQSHPIVIVKKRKHKGHGHGSHGsWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGPRISNS 80
Cdd:PRK09041   1 MKKENHPPIVVKRVKKKGHGHHGGS-WKIAYADFMTAMMAFFLVMWLLSSSTPEQLIGIAEYFRTPLKVALTGGDRSSDS 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  81 DSPIPGGGDDYTQQQGEVKKQPNIDEL----KKRMEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDS 156
Cdd:PRK09041  80 TSPIPGGGDDITQQDGEVNKQPNIAELaqgeKERREQERLEKLKQELDQAIESNPKLRQFKPQLLIDLTQEGLRIQIVDS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 157 QNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRVSLSGHTDDFPYATGEKGYSNWELSADRANASRRELVAGGLDDGKV 236
Cdd:PRK09041 160 QNRPMFATGSAEVEPYMRDILREIAPVLNDVPNRISLSGHTDATPYANGEKGYSNWELSADRANASRRELVAGGMDEGKV 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578176977 237 LRVVGMAATMRLTDRGPDDAINRRISLLVLNQQAEQAILHENAES-----QNESLDDLKQPGAVPSAAVPTSPPANPR 309
Cdd:PRK09041 240 LRVVGLASTMLLDKKDPLNPVNRRISIVVLNKKAEEAILHENAESvalsaQNEPVSALEAPAAAPAASVPAAPAAEPR 317
 
Name Accession Description Interval E-value
motB PRK09041
motility protein MotB;
1-309 0e+00

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 529.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977   1 MKNQSHPIVIVKKRKHKGHGHGSHGsWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGPRISNS 80
Cdd:PRK09041   1 MKKENHPPIVVKRVKKKGHGHHGGS-WKIAYADFMTAMMAFFLVMWLLSSSTPEQLIGIAEYFRTPLKVALTGGDRSSDS 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  81 DSPIPGGGDDYTQQQGEVKKQPNIDEL----KKRMEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDS 156
Cdd:PRK09041  80 TSPIPGGGDDITQQDGEVNKQPNIAELaqgeKERREQERLEKLKQELDQAIESNPKLRQFKPQLLIDLTQEGLRIQIVDS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 157 QNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRVSLSGHTDDFPYATGEKGYSNWELSADRANASRRELVAGGLDDGKV 236
Cdd:PRK09041 160 QNRPMFATGSAEVEPYMRDILREIAPVLNDVPNRISLSGHTDATPYANGEKGYSNWELSADRANASRRELVAGGMDEGKV 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578176977 237 LRVVGMAATMRLTDRGPDDAINRRISLLVLNQQAEQAILHENAES-----QNESLDDLKQPGAVPSAAVPTSPPANPR 309
Cdd:PRK09041 240 LRVVGLASTMLLDKKDPLNPVNRRISIVVLNKKAEEAILHENAESvalsaQNEPVSALEAPAAAPAASVPAAPAAEPR 317
MotB COG1360
Flagellar motor protein MotB [Cell motility];
27-273 3.27e-57

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 181.97  E-value: 3.27e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  27 WKIAYADFMTAMMAFFLVMWLISisspkeliqiaeyfrtplatavtggprisnsdspipgggddytqqqgevkkqpnide 106
Cdd:COG1360   10 WLVTYADLMTLLLAFFVLLWALS--------------------------------------------------------- 32

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 107 lkkrmeqarlkklrgdldQLIEADPklraLRPHLKIDLVQEGLRIQIIDsqnRPMFKTGSADVEPYMRDILRAIAPVLNG 186
Cdd:COG1360   33 ------------------SALEENL----LSGQVEVRITEEGLVIEIQD---RVLFDSGSAELTPEGRELLDKIAAVLAE 87

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 187 IPNRVSLSGHTDDFPYATGeKGYSNWELSADRANASRRELVAGGLDDGKvLRVVGMAATMRLT--DRGPDDAINRRISLL 264
Cdd:COG1360   88 VPNRIRVEGHTDNVPISTA-RFPSNWELSAARAAAVVRYLIEGGVPPER-LSAVGYGDTRPLApnDTPEGRARNRRVEIV 165


                 ....*....
gi 578176977 265 VLNQQAEQA 273
Cdd:COG1360  166 ILRRAAEEA 174
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 162-265 1.69e-19

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 81.83  E-value: 1.69e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 162 FKTGSADVEPYMRDILRAIAPVLNGIPN-RVSLSGHTDDfpyaTGEKGYsNWELSADRANASRRELVAGGLDDGKvLRVV 240
Cdd:cd07185    6 FDFGSAELTPEAKPLLDKLAEVLKKNPDaKIRIEGHTDS----RGSDAY-NQELSERRAEAVADYLVSKGVDASR-ITAV 79

                         90       100
                 ....*....|....*....|....*..
gi 578176977 241 GMAATMRLT--DRGPDDAINRRISLLV 265
Cdd:cd07185   80 GYGESRPIAsnDTEEGRAKNRRVEIVI 106
MotB_plug pfam13677
Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA ...
 12-67 5.65e-19

Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA/MotB proton-channel complex that forms the stator of the bacterial membrane flagellar motor. Key residues act as a plug to prevent premature proton flow. The plug is in the periplasm just C-terminal to the MotB TM, consisting of an amphipathic alpha helix flanked by Pro-52 and Pro-65, eg in Swiss:D3V2T1. In addition to the Pro residues, Ile-58, Tyr-61, and Phe 62 are also essential for plug function.


Pssm-ID: 463955 [Multi-domain]  Cd Length: 57  Bit Score: 78.72  E-value: 5.65e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 578176977   12 KKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPL 67
Cdd:pfam13677   2 KKKKEPEHEGGHGERWLVTYADLMTLLLAFFVLLYSMSSVDEKKFQQIAESFQDAF 57
 
Name Accession Description Interval E-value
motB PRK09041
motility protein MotB;
1-309 0e+00

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 529.13  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977   1 MKNQSHPIVIVKKRKHKGHGHGSHGsWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGPRISNS 80
Cdd:PRK09041   1 MKKENHPPIVVKRVKKKGHGHHGGS-WKIAYADFMTAMMAFFLVMWLLSSSTPEQLIGIAEYFRTPLKVALTGGDRSSDS 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  81 DSPIPGGGDDYTQQQGEVKKQPNIDEL----KKRMEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDS 156
Cdd:PRK09041  80 TSPIPGGGDDITQQDGEVNKQPNIAELaqgeKERREQERLEKLKQELDQAIESNPKLRQFKPQLLIDLTQEGLRIQIVDS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 157 QNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRVSLSGHTDDFPYATGEKGYSNWELSADRANASRRELVAGGLDDGKV 236
Cdd:PRK09041 160 QNRPMFATGSAEVEPYMRDILREIAPVLNDVPNRISLSGHTDATPYANGEKGYSNWELSADRANASRRELVAGGMDEGKV 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578176977 237 LRVVGMAATMRLTDRGPDDAINRRISLLVLNQQAEQAILHENAES-----QNESLDDLKQPGAVPSAAVPTSPPANPR 309
Cdd:PRK09041 240 LRVVGLASTMLLDKKDPLNPVNRRISIVVLNKKAEEAILHENAESvalsaQNEPVSALEAPAAAPAASVPAAPAAEPR 317
motB PRK12799
flagellar motor protein MotB; Reviewed
 1-303 1.38e-169

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 476.90  E-value: 1.38e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977   1 MKNQSHPIVIVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLATAVTGGPRISNS 80
Cdd:PRK12799   1 MKHQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEYFRTPLKVALTSGDKSSSS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  81 DSPIPGGGDDYTQQQGEVKKQpnIDELKKRMEQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRP 160
Cdd:PRK12799  81 TSPIPGGGDDPTQQVGEVRKQ--INSEESRQEIHRLNKLREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRP 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 161 MFKTGSADVEPYMRDILRAIAPVLNGIPNRVSLSGHTDDFPYATGEKGYSNWELSADRANASRRELVAGGLDDGKVLRVV 240
Cdd:PRK12799 159 MFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILRVV 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578176977 241 GMAATMRLTDRGPDDAINRRISLLVLNQQAEQAILHENAESQN------ESLDDLKQPGAVPSAAVPTS 303
Cdd:PRK12799 239 GMASTMRLKEQASDDPVNRRISILVLNKQSQHDIEHENLDNRAldiekaTGLKQIDTHGTVPVAAVTPS 307
MotB COG1360
Flagellar motor protein MotB [Cell motility];
27-273 3.27e-57

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 181.97  E-value: 3.27e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  27 WKIAYADFMTAMMAFFLVMWLISisspkeliqiaeyfrtplatavtggprisnsdspipgggddytqqqgevkkqpnide 106
Cdd:COG1360   10 WLVTYADLMTLLLAFFVLLWALS--------------------------------------------------------- 32

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 107 lkkrmeqarlkklrgdldQLIEADPklraLRPHLKIDLVQEGLRIQIIDsqnRPMFKTGSADVEPYMRDILRAIAPVLNG 186
Cdd:COG1360   33 ------------------SALEENL----LSGQVEVRITEEGLVIEIQD---RVLFDSGSAELTPEGRELLDKIAAVLAE 87

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 187 IPNRVSLSGHTDDFPYATGeKGYSNWELSADRANASRRELVAGGLDDGKvLRVVGMAATMRLT--DRGPDDAINRRISLL 264
Cdd:COG1360   88 VPNRIRVEGHTDNVPISTA-RFPSNWELSAARAAAVVRYLIEGGVPPER-LSAVGYGDTRPLApnDTPEGRARNRRVEIV 165


                 ....*....
gi 578176977 265 VLNQQAEQA 273
Cdd:COG1360  166 ILRRAAEEA 174
PRK06778 PRK06778
hypothetical protein; Validated
 10-270 7.48e-44

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 151.62  E-value: 7.48e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  10 IVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTplATAVTGG-----PRISNSDSPI 84
Cdd:PRK06778   5 IIKRANRKKHHVRHSGAWKVAFADFTLAMMALFMVLWIVNSVSKSERESIIAALHG--QSIFNGGglsplNKISPSHPPK 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  85 PGGGDDYTQQQGEVKkQPN--IDELKKRMEQARlkklrGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMF 162
Cdd:PRK06778  83 PATVAVPEETEKKAR-DVNekTALLKKKSATEL-----GELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMF 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 163 KTGSADVEPYMRDILRAIAPVLNGIPNRVSLSGHTDDFPYAtgEKGYSNWELSADRANASRRELVAGGLDDGKVLRVVGM 242
Cdd:PRK06778 157 ERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYK--NNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAM 234

                        250       260
                 ....*....|....*....|....*...
gi 578176977 243 AATMRLTDRGPDDAINRRISLLVLNQQA 270
Cdd:PRK06778 235 ADQMLLDAKNPQSAGNRRIEIMVLTKSA 262
motB PRK05996
MotB family protein;
6-269 1.50e-31

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 121.73  E-value: 1.50e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977   6 HPIVIVKKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYF-------RTPL----------- 67
Cdd:PRK05996  11 NEIIIVRRGGDDDHEGHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFnpikltdRKPSekglkdpvdga 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  68 -----------------------------------------------------------------------------ATA 70
Cdd:PRK05996  91 egeqkpgkskfeedqrvegssavtgddttrtsgdqtnyseadlfrnpyavlaeiaqevgqqanvsakgdggaaqsgpATG 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  71 VTGG----------------PRISNSDSPIPGGGDDYTQQQGEVKKQPN----------------------IDELKKRM- 111
Cdd:PRK05996 171 ADGGeayrdpfdpdfwskqvEVTTAGDLLPPGQAREQAQGAKSATAAPAtvpqaaplpqaqpkkaateeelIADAKKAAt 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 112 -----------------EQARLKKLRGDLDQLIEADPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSADVEPYMR 174
Cdd:PRK05996 251 gepaanaakaakpepmpDDQQKEAEQLQAAIAQAIGGVAGKLAEGVTVTPVEGGLLISLTDQVDYGMFAIGSAVPRAELV 330

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 175 DILRAIAPVLNGIPNRVSLSGHTDDFPYATGEkgYSNWELSADRANASRRELVAGGLDDGKVLRVVGMAatmrltDRGPD 254
Cdd:PRK05996 331 LAMEKIGQLLAERPGAVIIRGHTDARPFKSAT--YDNWRLSTARAQSAYYMLVRGGLDEKRIEQVEGFA------DRRPK 402

                        410       420
                 ....*....|....*....|.
gi 578176977 255 D------AINRRISLLVLNQQ 269
Cdd:PRK05996 403 LpndpnaAANRRIEILIQSKQ 423
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 27-308 7.30e-26

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 103.55  E-value: 7.30e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  27 WKIAYADFMTAMMAFFLVMWliSISSPKEliqiAEYFRtpLATAVTG---GPriSNSDSPIPgGGDDYTQQQGEVKKQPN 103
Cdd:PRK09038  17 WLVSYADFITLLFAFFVVMY--AISSVNE----GKYKV--LSEALTGafnGP--SRSMKPIP-IGKEQPKTTQPARPLVI 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 104 IDELKKRMEQARLKKLRGDLdqlieadpkLRALRPHLKIDLV-----QEGLRIQIIDSQnrpMFKTGSADVEPYMRDILR 178
Cdd:PRK09038  86 DSEQPDARAQDQLKTIADDL---------RKALGPLIESGQVtvrrnELWIEIEINSSL---LFGSGDAMLSDQAFAILE 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 179 AIAPVLNGIPNRVSLSGHTDDFPYATGEkgY-SNWELSADRANASRRELVAGGLDDGKvLRVVGMAATMRLTDRGPDD-- 255
Cdd:PRK09038 154 KVAEVLKPAPNPIHVEGFTDNVPIATAQ--FpSNWELSAARAASVVRLLADDGVAPSR-LAAVGYGEFQPVADNDTAEgr 230

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 578176977 256 AINRRISLLVLNQQAEQAILhenaesqNESLDDLKQPGAVPSAAVPTSPPANP 308
Cdd:PRK09038 231 ARNRRVVLVILRNLDVRRSL-------TPVGSANATPDAALRRAGTQAAPATA 276
motB PRK07734
flagellar motor protein MotB; Reviewed
 27-219 2.81e-24

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 99.05  E-value: 2.81e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  27 WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRtplaTAVTGGPRISNSDSPI-----PGGGDDYTQQQGEVKKQ 101
Cdd:PRK07734  19 WLIPYADLLTLLLALFIVLFAMSSIDAAKFKQMAVAFN----SEFAGGTGVKDFLSDQkpedeKELSASSLEAEQAKKKE 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 102 PNidELKKRMEQARLKKLRGDLDQLIEAdpklRALRPHLKIDLVQEGLRIQIIDSQnrpMFKTGSADVEPYMRDILRAIA 181
Cdd:PRK07734  95 EA--EAKKKKEMEELKAVQKKIDQYIKE----KQLSSSLQTKLTEEGLLITILDNI---LFDSGKADVRLEDLPLAKEIS 165

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 578176977 182 PVLNGIPNR-VSLSGHTDDFPYATgEKGYSNWELSADRA 219
Cdd:PRK07734 166 NLLVSNPPRnITISGHTDNVPIAN-AQFASNWELSVMRA 203
motB PRK08944
flagellar motor protein MotB; Reviewed
 27-288 5.99e-24

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 98.93  E-value: 5.99e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  27 WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFR-------------TPLATAV------TGGPR----------- 76
Cdd:PRK08944  17 WLATFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKfafgvqnkievkdIPKGTSIiaqefrPGRPEptpievimqqt 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  77 -----------ISNSDSP---------IPGGGDDYTQQQGEVKKQPNIDELKKRMEQArLKKlrgdldQLIEADpklral 136
Cdd:PRK08944  97 idmtqqtlefqAGESDSAggtqqqrgkQRGGEASAEVKAEKAAAQEQIEDLVKKLAQQ-LEK------EIEDGA------ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 137 rphlkIDLVQEGLRIqIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNGIPNRVSLSGHTDDFPYATgEKGYSNWELSA 216
Cdd:PRK08944 164 -----IEIESLGQQI-IIRIREKGSFPSGSAFLQPKFKPVVRKIGELLKDVPGIITVSGHTDNVPISS-ELYRSNWDLSS 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578176977 217 DRANASRRELVAGGLDDGKVLRVVGMAATMrltDRGPDD-----AINRRIsllvlnqqaEQAILHENA-ESQNESLDD 288
Cdd:PRK08944 237 ARAVAVAHELLKVKGFDPQRLKVVGMADTQ---PLVPNDtaenrARNRRV---------EIIIEQGKAkESDEIPVKD 302
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 162-265 1.69e-19

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 81.83  E-value: 1.69e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 162 FKTGSADVEPYMRDILRAIAPVLNGIPN-RVSLSGHTDDfpyaTGEKGYsNWELSADRANASRRELVAGGLDDGKvLRVV 240
Cdd:cd07185    6 FDFGSAELTPEAKPLLDKLAEVLKKNPDaKIRIEGHTDS----RGSDAY-NQELSERRAEAVADYLVSKGVDASR-ITAV 79

                         90       100
                 ....*....|....*....|....*..
gi 578176977 241 GMAATMRLT--DRGPDDAINRRISLLV 265
Cdd:cd07185   80 GYGESRPIAsnDTEEGRAKNRRVEIVI 106
MotB_plug pfam13677
Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA ...
 12-67 5.65e-19

Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA/MotB proton-channel complex that forms the stator of the bacterial membrane flagellar motor. Key residues act as a plug to prevent premature proton flow. The plug is in the periplasm just C-terminal to the MotB TM, consisting of an amphipathic alpha helix flanked by Pro-52 and Pro-65, eg in Swiss:D3V2T1. In addition to the Pro residues, Ile-58, Tyr-61, and Phe 62 are also essential for plug function.


Pssm-ID: 463955 [Multi-domain]  Cd Length: 57  Bit Score: 78.72  E-value: 5.65e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 578176977   12 KKRKHKGHGHGSHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPL 67
Cdd:pfam13677   2 KKKKEPEHEGGHGERWLVTYADLMTLLLAFFVLLYSMSSVDEKKFQQIAESFQDAF 57
motB PRK08457
flagellar motor protein MotB; Reviewed
 27-261 2.02e-14

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 71.67  E-value: 2.02e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  27 WKIAYADFMTAMMAFFLVMWLISISSPK-------ELIQIAEYFRTPLATavtggpRISNSDSPIPGGGDDYTQQQGEVK 99
Cdd:PRK08457  16 WAVPYADFLSLLLALFIALYAISAVNKAkvealktEFIKIFDYTAKPEVK------QPVKVIPPDSGDAEEEMDELKSLK 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 100 KQPNidelKKRMEQARLKKLRGDLDQLIEAdpklralrphlkidlvqeglriQIIDSQNRPMFKTGSADV-EPYMRDILR 178
Cdd:PRK08457  90 ASQN----TQQETIERRKGEGGALDQIDNG----------------------IALKLPSKLLFENGSAEIiNADMMDYLK 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 179 AIAPVLNGIPNRVS--LSGHTDDFPyATGEKGYSNWELSADRANASRRELVAGGLDDgKVLRVVGMAATMRLT--DRGPD 254
Cdd:PRK08457 144 RIAKIITKLPKQVKinVRGYTDNSP-LNKSRYKDHYELAAARAYNVMKVLIQYGINP-NRLSFSSYGSNNPIApnDSLEN 221


                 ....*..
gi 578176977 255 DAINRRI 261
Cdd:PRK08457 222 RLKNNRV 228
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 162-260 4.53e-14

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 66.61  E-value: 4.53e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  162 FKTGSADVEPYMRDILRAIAPVLNGIPNR--VSLSGHTDDFPYATGekgysNWELSADRANASRRELVAGGLDDGKVLrV 239
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKntITIEGHTDTVGSAAY-----NWELSQRRAEAVRRYLVNFGVPPSRIS-V 74

                          90       100
                  ....*....|....*....|.
gi 578176977  240 VGMAATMRLTDRGPDDAINRR 260
Cdd:pfam00691  75 VGYGATKPITDNKTPEGRARN 95
PRK06925 PRK06925
flagellar motor protein MotB;
27-268 5.58e-14

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 69.79  E-value: 5.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  27 WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTplatavTGGPRISNSDSPIPgggDDYTQQQGEVKKQPNIDE 106
Cdd:PRK06925  15 WMVTFSDLITLILVFFILLFSMSQIDAQKFKAAVESFQQ------RGSLGFLPSAIEFE---NPAESSEDEEKQEDQLDE 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 107 LKKRMEQArLKKlrGDLDQLIEADPKLRALrphlkidlvqeglriqIIDSQNRPMFKTGSADVEPYMRDILRAIAPVLNG 186
Cdd:PRK06925  86 LLKKVNEY-IEE--NELKSVITAKRDERGV----------------VLVLQEAVLFETGEADILKQAEPFLHKIGVLLST 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 187 IPNRVSLSGHTDDFPYATgekgY---SNWELSADRANASRRELVAGGLDDGKVLRVVGMAATMRLTDRGPDDAI--NRRI 261
Cdd:PRK06925 147 IPNDIKVEGHTDSRPIST----YrypSNWELSAARASSVIRYFTSKEKLDSSRFIAVGYADTKPVVPNTTEENMqeNRRV 222


                 ....*..
gi 578176977 262 SLLVLNQ 268
Cdd:PRK06925 223 EIVISDP 229
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 162-268 3.48e-13

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 68.66  E-value: 3.48e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 162 FKTGSADVEPYMRDILRAIAPVLNGIPN-RVSLSGHTDdfpyATGEKGYsNWELSADRANASRRELVAGGLDDGKvLRVV 240
Cdd:COG2885  191 FDFDSAELTPEAKAALDELAALLKENPDlRIEIEGHTD----SRGSDAY-NLALSERRAEAVKDYLVSKGIPASR-ITAV 264

                         90       100       110
                 ....*....|....*....|....*....|
gi 578176977 241 GMAATMRLTDRGPDD--AINRRISLLVLNQ 268
Cdd:COG2885  265 GYGESRPVASNDTEEgrAKNRRVEIVVLKK 294
motB PRK06667
flagellar motor protein MotB; Validated
 27-266 1.67e-10

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 60.19  E-value: 1.67e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  27 WKIAYADFMTAMMAFFLVMWLISISSPKELIQIaeyfrtpLATAVTGGPRisnsdspipGGGDdyTQQQGEVKKQPN-ID 105
Cdd:PRK06667  18 YMLTYGDMVTLLLCFFVMLFTTNDVDENVLQII-------SASFTGTGFF---------KGGQ--TLSKGKLSELGNsIM 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 106 ELKKRMEQARLKKLRGDLDQLIEadPKLRALrphlKIdLVQEGLRIQIIDSQNRPMFKTGSADVE-PYMRDILRAIAPVL 184
Cdd:PRK06667  80 SLPSTEKGKQLSQAKKNASSLFK--PEIQSN----KV-AVTEDERGLVISLASDAFFYPGSAEVKlEENRETLQKIASFI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 185 NGIPN---RVSLSGHTDDFPyATGEKGY-SNWELSADRANASRRELVAGGLDDGKVLRVVGMAATMRL-TDRGPD-DAIN 258
Cdd:PRK06667 153 GFLDLagrNFRIEGHTDNVD-VNPEGPWkSNWELSGARAVNMLEYILNYGDQSESWFQVSGFAGSRPLaTEDTPEgRAYN 231


                 ....*...
gi 578176977 259 RRISLLVL 266
Cdd:PRK06667 232 RRIDIVIL 239
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 27-265 3.42e-10

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 58.92  E-value: 3.42e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977  27 WKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTplaTAVTGGPRISNSdspIPgggdDYTQQQGEVKKQPnide 106
Cdd:PRK06742  12 WMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSD---TEQVDAKVMENT---IP----DISHEKNDEKMIS---- 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 107 lKKRMEQArLKKLRGDLDQliEADPKLRALRPhlkidlvQEGLRIQIIDSQnrpMFKTGSADVEPYMRDILRAIAPVLNG 186
Cdd:PRK06742  78 -KKRMDEL-YKKLKAYVDN--NGISQVNVYRE-------DTGVSVVIVDNL---IFDTGDANVKPEAKEIISQLVGFFQS 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 187 IPNRVSLSGHTDDFPYATgEKGYSNWELSADRANASRRELVAGGLDDGKVLRVVGMAATMRL-TDRGPDD-AINRRISLL 264
Cdd:PRK06742 144 VPNPIVVEGHTDSRPIHN-DKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVvPNDSPQNwEKNRRVVIY 222


                 .
gi 578176977 265 V 265
Cdd:PRK06742 223 I 223
PRK07033 PRK07033
DotU family type VI secretion system protein;
161-265 1.05e-08

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 55.83  E-value: 1.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 161 MFKTGSADVEPYMRDILRAIAPVLNGIPNRVSLSGHTDDFPYATGeKGYSNWELSADRANASrRELVAGGLDDGKVLRVV 240
Cdd:PRK07033 317 LFASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSDNVPIRTA-RFPSNWELSQARAQAV-RALLAARLGQPERVTAE 394

                         90       100       110
                 ....*....|....*....|....*....|..
gi 578176977 241 GMAATMRLTdrgPDD-----AINRR--ISLLV 265
Cdd:PRK07033 395 GRGDSDPVA---PNDsaenrARNRRveITLLV 423
PRK08126 PRK08126
hypothetical protein; Provisional
 161-265 2.31e-06

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 48.54  E-value: 2.31e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 161 MFKTGSADVEPYMRDILRAIAPVLNGIPNRVSLSGHTDDFPYATGEKGySNWELSADRANASRRELVAGGLDDGKvLRVV 240
Cdd:PRK08126 326 MFVPGQATVNPAMGPLIAKIAREIARVGGKVTVTGHTDNQPIRSAQFA-SNLVLSEKRAAQVAQMLQSAGVPASR-LEAV 403

                         90       100
                 ....*....|....*....|....*..
gi 578176977 241 GMAATMRLTDRGPDD--AINRRISLLV 265
Cdd:PRK08126 404 GKGDAQPVADNRTPQgrAQNRRVEITV 430
PRK09039 PRK09039
peptidoglycan -binding protein;
146-263 4.95e-06

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 47.27  E-value: 4.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 146 QEGLRIqIIDS---QNRPMFKTGSADVEPYMRDILRAIAPVLN----GIPN------RVSlsGHTDDFPYATGEKGYSNW 212
Cdd:PRK09039 210 REGIRI-VGDRfvfQSEVLFPTGSAELNPEGQAEIAKLAAALIelakEIPPeinwvlRVD--GHTDNVPLSGTGRFRDNW 286

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 578176977 213 ELSADRANASRRELVAGGLDDGKvLRVVGMAATMRLTDRGPDDAI--NRRISL 263
Cdd:PRK09039 287 ELSSARAISVVKFLIALGVPADR-LAAAGFGEFQPLDPGDTPEARarNRRIEL 338
PRK09040 PRK09040
hypothetical protein; Provisional
 105-236 5.48e-05

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 43.47  E-value: 5.48e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578176977 105 DELKKR-MEQARLKKLRGDLdqlieADPkLRALRphlkIDLVqEGlRIQIIDSQnrpMFKTGSADVEPYMRDILRAIAPV 183
Cdd:PRK09040  49 AEVKQRqAEAQRRKTLEQAL-----AGP-LAAGR----VTLV-NG-RIGISGSV---LFALNSDQLQPEGRELLKSLAGP 113

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 578176977 184 LNG-IPNRVSL---SGHTDDFPYATGEKGYS-NWELSADRANASRRELVAGGLDDGKV 236
Cdd:PRK09040 114 LAAyLRARDEIlmvSGFTDDQPVRAGNRRFAdNWELSAQRALTVTRALIDAGVPASSV 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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