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Conserved domains on  [gi|577702418|gb|AHH85495|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Pycnonotus urostictus philippensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-320 1.11e-148

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 421.54  E-value: 1.11e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPM 80
Cdd:MTH00112  14 ILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPT 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  81 SCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPSLLTLMAILSTALGGWMGMNQT 160
Cdd:MTH00112  94 SCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQT 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 161 QIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAG 240
Cdd:MTH00112 174 QLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAG 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 241 LPPLTGFLPKWLIIQELTKQDMIFAAMTISMLSLLSLFFYLRLAYCATITLPPHTSNHMKQWHTSKPTSTSIAILAVMST 320
Cdd:MTH00112 254 LPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLST 333
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-320 1.11e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 421.54  E-value: 1.11e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPM 80
Cdd:MTH00112  14 ILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPT 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  81 SCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPSLLTLMAILSTALGGWMGMNQT 160
Cdd:MTH00112  94 SCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQT 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 161 QIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAG 240
Cdd:MTH00112 174 QLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAG 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 241 LPPLTGFLPKWLIIQELTKQDMIFAAMTISMLSLLSLFFYLRLAYCATITLPPHTSNHMKQWHTSKPTSTSIAILAVMST 320
Cdd:MTH00112 254 LPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLST 333
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 10-270 3.31e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.39  E-value: 3.31e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   10 SNHWITAWAGLEINTLAILPMI-SKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQL-----------T 77
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   78 HPMSCLILTSAIAMKLGLAPFHFWFPEVLQGSPL-ITGLLLSTVMKFPP-----MTLLFMTSHSLNPSLLTLMAILSTAL 151
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  152 GGWMGMNQTQIRKILAFSSISHLGWMAMIIS----YSPKLTLLNFYLYALMTATVFLTLNSI-----KVSKLSILMTTWT 222
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 577702418  223 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIFAAMTIS 270
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-266 7.88e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.96  E-value: 7.88e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMIS-KSHHPRAIEAATKYFLTQATASALVLF-SSMNNAWhTGQWDITQLTH 78
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  79 PMS------------CLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMK----FPPMTLLFMTSHSLNPS--- 139
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADwql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 140 LLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAM-IISYSPK-LTLLNFYL--YALMTATVFLTLNSIK----- 210
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 577702418 211 VSKLSILMTTWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIFAA 266
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLA 406
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-266 1.02e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.71  E-value: 1.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418    1 LLGTTLTISSNHWITAWAGLEINTLAILPMIS-KSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHP 79
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   80 MSCLILT------------SAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMK---FPPMTLLFMTS----HSLNPSL 140
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  141 LTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAMIISYSPKLTLLN--FYL--YALMTA---TVFLTLNSIK--- 210
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLgafGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 577702418  211 ---VSKLSILMTTWtkiPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIFAA 266
Cdd:TIGR01770 352 ieyISDFAGLFKTN---PILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLA 407
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-320 1.11e-148

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 421.54  E-value: 1.11e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPM 80
Cdd:MTH00112  14 ILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPT 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  81 SCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPSLLTLMAILSTALGGWMGMNQT 160
Cdd:MTH00112  94 SCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQT 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 161 QIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAG 240
Cdd:MTH00112 174 QLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAG 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 241 LPPLTGFLPKWLIIQELTKQDMIFAAMTISMLSLLSLFFYLRLAYCATITLPPHTSNHMKQWHTSKPTSTSIAILAVMST 320
Cdd:MTH00112 254 LPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTLST 333
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 2-320 9.35e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 350.76  E-value: 9.35e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   2 LGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPMS 81
Cdd:MTH00070  15 LGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLP 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  82 CLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPSLLTLMAILSTALGGWMGMNQTQ 161
Cdd:MTH00070  95 TIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQ 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 162 IRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAGL 241
Cdd:MTH00070 175 LRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGL 254

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 577702418 242 PPLTGFLPKWLIIQELTKQDMIFAAMTISMLSLLSLFFYLRLAYCATITLPPHTSNHMKQWHTSKPTSTSIAILAVMST 320
Cdd:MTH00070 255 PPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSLTIILSL 333
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 2-320 2.51e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 347.18  E-value: 2.51e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   2 LGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPMS 81
Cdd:MTH00135  15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLP 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  82 CLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSlNPSLLTLMAILSTALGGWMGMNQTQ 161
Cdd:MTH00135  95 TTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQ 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 162 IRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAGL 241
Cdd:MTH00135 174 LRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGL 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 242 PPLTGFLPKWLIIQELTKQDMIFAAMTISMLSLLSLFFYLRLAYCATITLPPHTSNHMKQWHTSKPTSTS-IAILAVMST 320
Cdd:MTH00135 254 PPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLAISTTATL 333
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-320 9.74e-105

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 309.85  E-value: 9.74e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPM 80
Cdd:MTH00105  14 FLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPT 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  81 SCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPSLLTLMAILSTALGGWMGMNQT 160
Cdd:MTH00105  94 ASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQT 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 161 QIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAG 240
Cdd:MTH00105 174 QLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGG 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 241 LPPLTGFLPKWLIIQELTKQDMIFAAMTISMLSLLSLFFYLRLAYCATITLPPHTSNHMKQWH-TSKPTSTSIAILAVMS 319
Cdd:MTH00105 254 LPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQfENTKPMTLLPTLIILS 333


                 .
gi 577702418 320 T 320
Cdd:MTH00105 334 T 334
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 2-320 7.38e-86

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 261.83  E-value: 7.38e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   2 LGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPMS 81
Cdd:MTH00200  15 LGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLS 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  82 CLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPSLLTLMAILSTALGGWMGMNQTQ 161
Cdd:MTH00200  95 ETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQ 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 162 IRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAGL 241
Cdd:MTH00200 175 LRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGL 254

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 577702418 242 PPLTGFLPKWLIIQELTKQDMIFAAMTISMLSLLSLFFYLRLAYCATITLPPHTSNHMKQWHTSKPTSTSIAILAVMST 320
Cdd:MTH00200 255 PPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLLLLLSI 333
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-320 2.49e-76

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 237.52  E-value: 2.49e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPM 80
Cdd:MTH00041  14 ILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  81 SCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPSLLTLMAILSTALGGWMGMNQT 160
Cdd:MTH00041  94 SSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQT 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 161 QIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAG 240
Cdd:MTH00041 174 QTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGG 253

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 241 LPPLTGFLPKWLIIQELTKQDMIFAAMTISMLSLLSLFFYLRLAYCATITLPPHTSNHMKQWHTSKPTSTSIAILAVMST 320
Cdd:MTH00041 254 LPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSILSS 333
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-271 5.01e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 166.54  E-value: 5.01e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWhtgqwdITQLTHPM 80
Cdd:MTH00160  15 IMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NLMLFNNI 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  81 SCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLfmtSHSLNPSLLTLMAILSTALGGWMGMNQT 160
Cdd:MTH00160  89 SSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQT 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 161 QIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAG 240
Cdd:MTH00160 166 SLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGG 245

                        250       260       270
                 ....*....|....*....|....*....|.
gi 577702418 241 LPPLTGFLPKWLIIQELTKQDMIFAAMTISM 271
Cdd:MTH00160 246 LPPFLGFLPKWIIIQLLISNNMFFLLFILIM 276
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-269 3.90e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 148.50  E-value: 3.90e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITqlthpm 80
Cdd:MTH00144  14 VMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM------ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  81 scLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNP-SLLTLMAILSTALGGWMGMNQ 159
Cdd:MTH00144  88 --SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLNQ 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 160 TQIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSikVSKLSILMTTWTKIPSLNAMLLLTLLSLA 239
Cdd:MTH00144 166 TQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS--GDSGSMKDLGSLKPSYKTGLSIISLLLSL 243

                        250       260       270
                 ....*....|....*....|....*....|.
gi 577702418 240 G-LPPLTGFLPKWLIIQELTKQDMIFAAMTI 269
Cdd:MTH00144 244 GgLPPFLGFCSKLLVLISSMESSPLLLILLL 274
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 2-263 1.01e-39

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 142.23  E-value: 1.01e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   2 LGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSmnnawhTGQWDITQLTHPMS 81
Cdd:MTH00011  17 LGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNIT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  82 CLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPSLLTLMAILSTALGGWMGMNQTQ 161
Cdd:MTH00011  91 ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQ 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 162 IRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAGL 241
Cdd:MTH00011 171 LRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGL 250

                        250       260
                 ....*....|....*....|..
gi 577702418 242 PPLTGFLPKWLIIQELTKQDMI 263
Cdd:MTH00011 251 PPFTGFMPKLMAIETLTSNSMI 272
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 1-257 2.46e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 130.18  E-value: 2.46e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTgqwditqLTHPM 80
Cdd:MTH00197   8 FGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YLSLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  81 SCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHslNPSLLTLMAILSTALGGWMGMNQT 160
Cdd:MTH00197  81 SVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 161 QIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSIlMTTWTKIPSLNAMLLLTLLSLAG 240
Cdd:MTH00197 159 NIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGLSFLSLG 237

                        250
                 ....*....|....*...
gi 577702418 241 -LPPLTGFLPKWLIIQEL 257
Cdd:MTH00197 238 gLPPLSGFFLKWLILTSL 255
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 1-268 3.79e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 106.27  E-value: 3.79e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMI-SKSHHPRAIEAATKYFLTQATASALVLFS-------------SMNNAW 66
Cdd:MTH00196   3 ALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  67 HTGQWDITQLTHPMSCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFmtSHSLNPSLLTLMAI 146
Cdd:MTH00196  83 LNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 147 LSTALGGWMGMNQTQIRKILAFSSISHLGWMAMIISY----SPKLTLLNFYLYALMTATVFLTLNSIKVSKLSI--LMTT 220
Cdd:MTH00196 161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALNVYKNLIieFSGL 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 577702418 221 WTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIFAAMT 268
Cdd:MTH00196 241 SRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLL 288
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 10-270 3.31e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.39  E-value: 3.31e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   10 SNHWITAWAGLEINTLAILPMI-SKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQL-----------T 77
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   78 HPMSCLILTSAIAMKLGLAPFHFWFPEVLQGSPL-ITGLLLSTVMKFPP-----MTLLFMTSHSLNPSLLTLMAILSTAL 151
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  152 GGWMGMNQTQIRKILAFSSISHLGWMAMIIS----YSPKLTLLNFYLYALMTATVFLTLNSI-----KVSKLSILMTTWT 222
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 577702418  223 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIFAAMTIS 270
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 1-266 7.88e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.96  E-value: 7.88e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMIS-KSHHPRAIEAATKYFLTQATASALVLF-SSMNNAWhTGQWDITQLTH 78
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  79 PMS------------CLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMK----FPPMTLLFMTSHSLNPS--- 139
Cdd:COG1007  191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADwql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 140 LLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAM-IISYSPK-LTLLNFYL--YALMTATVFLTLNSIK----- 210
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 577702418 211 VSKLSILMTTWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIFAA 266
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLA 406
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 1-266 1.02e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 97.71  E-value: 1.02e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418    1 LLGTTLTISSNHWITAWAGLEINTLAILPMIS-KSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHP 79
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   80 MSCLILT------------SAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMK---FPPMTLLFMTS----HSLNPSL 140
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  141 LTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAMIISYSPKLTLLN--FYL--YALMTA---TVFLTLNSIK--- 210
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLgafGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 577702418  211 ---VSKLSILMTTWtkiPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIFAA 266
Cdd:TIGR01770 352 ieyISDFAGLFKTN---PILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLA 407
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 1-254 6.71e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 92.77  E-value: 6.71e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMIS-KSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDI----TQ 75
Cdd:MTH00199 107 ALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSI 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  76 LTHPMSCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNpsLLTLMAILSTALGGWM 155
Cdd:MTH00199 187 LTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAIG 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 156 GMNQTQIRKILAFSSISHLG---WMAMIISY-SPKLTLLNFYLYALMTATVFLTLNSIKVSKLSI--LMTTWTKIPSLNA 229
Cdd:MTH00199 265 ALNQTKIKRLLAYSGIGHMGfilFGVAIGSFeSIQASLIYMIIYVIMSICSFSIILSLKLTKGLIveVSGLSRKNPVIAL 344

                        250       260
                 ....*....|....*....|....*
gi 577702418 230 MLLLTLLSLAGLPPLTGFLPKWLII 254
Cdd:MTH00199 345 TLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-266 7.12e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 89.49  E-value: 7.12e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLA--ILPMISKsHHPRAIEAATKYFLTQATASALVL--------------FSSMNN 64
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPlyALAALRR-DRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAK 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  65 AWHTGQWDITQLThpMSCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMK---FPPMT-LLFMTSHSLNPS- 139
Cdd:PRK05777 192 ALADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDw 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 140 --LLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWM--AMIISYSPKLTLLNFYL--YALMTATVFLTLNSIK--- 210
Cdd:PRK05777 270 qqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFGVISLLRrkg 349

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 577702418 211 --VSKLSILMTTWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIFAA 266
Cdd:PRK05777 350 geAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 2-254 1.11e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 83.37  E-value: 1.11e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   2 LGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAI---------EAATKYFLTQATASALVLFSSMNNAWHTGQ-- 70
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  71 ------------WDITQLTHPMSCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLfmTSHSLNP 138
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 139 SLLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLY-------ALMTATVFLTL----- 206
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALASFTVICTLeefgt 436

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 577702418 207 -------------NSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 254
Cdd:MTH00198 437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-269 1.22e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 74.03  E-value: 1.22e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPM 80
Cdd:COG0651  117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARL 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  81 S----------CLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVM---------KFppMTLLFMTSHSLNPS-L 140
Cdd:COG0651  197 AeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtkvgvyailRV--LTLLFGADPALFLGtL 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 141 LTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLY----ALMTATVFLTLNSIKV----S 212
Cdd:COG0651  275 LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERatgtR 354

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 577702418 213 KLSILMTTWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIFAAMTI 269
Cdd:COG0651  355 DLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ndhB CHL00049
NADH dehydrogenase subunit 2
 38-195 6.39e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 65.80  E-value: 6.39e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  38 RAIEAATKYFLTQATASALVL--FSSMN--NAWHTGQWDI------TQLTHPMSCLI----LTSAIAMKLGLAPFHFWFP 103
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLYglSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 104 EVLQGSPL-----------ITGLLLSTVMkfppMTLLFMTSHSLNPSLLTLMAILSTALGGWMGMNQTQIRKILAFSSIS 172
Cdd:CHL00049 239 DVYEGSPTpvvaflsvtskVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                        170       180       190
                 ....*....|....*....|....*....|
gi 577702418 173 HLGW-MAMIIS------YSPKLTLLNFYLY 195
Cdd:CHL00049 315 QIGYvIIGIIVgdsndgYASMITYMLFYIF 344
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 25-179 1.01e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 56.24  E-value: 1.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  25 LAILPM---ISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQW--DITQLTH-----PMSCLILTS---AIAM 91
Cdd:COG1008  142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  92 KLGLAPFHFWFPEVLQGSPLITGLLLSTVM---------KFPpMTLLFMTSHSLNPSLLTLmAILSTALGGWMGMNQTQI 162
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDL 299

                        170
                 ....*....|....*..
gi 577702418 163 RKILAFSSISHLGWMAM 179
Cdd:COG1008  300 KRLIAYSSVSHMGFVLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 20-253 1.62e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.49  E-value: 1.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  20 LEINTLAILPMIS-KSHHPRAIEAATKYFLTQATASALVLFS---------SMNNAWHTGQWDITQLTHPMSCL-ILTSA 88
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  89 IAMKLGLAPFHFWFPEVLQGSPL-ITGLLLstVMKFPPMTLLFMTSHSL-----NPS----LLTLMAILSTALGGWMGMN 158
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPSsISAMLL--VIKQAGLYALARVLFSIygpaiNLAtvgwVIIILGCLTMFVGVAMAVV 307

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 159 QTQIRKILAFSSISHLGWM------AMIISYSPKLT----------LLNFYLYALMTATVFLT----LNSIKVSKLSILM 218
Cdd:PRK08376 308 QKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELG 387

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 577702418 219 TTWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 253
Cdd:PRK08376 388 GLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
37-180 1.85e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 55.44  E-value: 1.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  37 PRAIEAATKYFLTQATASALVLF-SSMNNAWHTGQwdiTQLTHPMSCLI-------------LTSAIAMKLGLAPFHFWF 102
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 103 PEVLQGSPLITGLLLSTVMK---FPPMTLLFMTSHSLNPS----LLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLG 175
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....*
gi 577702418 176 WMaMI 180
Cdd:PRK02504 314 FV-MI 317
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 37-181 3.19e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.48  E-value: 3.19e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   37 PRAIEAATKYFLTQATASALVLFSSMNNAW-HTGQWDITQL-THPMSC-------LILTSAIAMKLGLAPFHFWFPEV-- 105
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  106 ---LQGSPLITGLLLST----VMKFpPMTLLFMTSHSLNPSLLTLmAILSTALGGWMGMNQTQIRKILAFSSISHLGWMA 178
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF-NLPLFPDASLYFAPVLAAL-GVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309


                  ...
gi 577702418  179 MII 181
Cdd:TIGR01972 310 LGI 312
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 10-267 5.96e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.77  E-value: 5.96e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  10 SNHWITAWAGLEINTLAILPMISKSHHpRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPMS-------- 81
Cdd:PRK08668 117 ANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLIndtstgfa 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  82 ---CLILTSAIAMKLGLAPFHFWFPEVLQGSP-----LITGLLLST-------VMKFPPMTLLFMT-----SHSLNPSLL 141
Cdd:PRK08668 196 livFLFLLAFGVAKAGIFPLHVWAPDAYSEAPqsfsaVLSGQLSKLgaygfllVLYVLPGTKLFSEfgtyrGVPLFNYIL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 142 TLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAMII----SYSPKLTLLNFYLYALMTATVFLTLNSI----KVSK 213
Cdd:PRK08668 276 AWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLglgtSLGFAGGLFHVFNHALFKGLFFLIFAAViyrtGTTK 355

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 577702418 214 LSILMTTWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIFAAM 267
Cdd:PRK08668 356 ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAF 409
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 20-257 1.25e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 49.49  E-value: 1.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  20 LEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFS---------SMNNAWHTGQW-DITQLTHPMSCLILtsAI 89
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllygvtgTLNMADLAGALaENPTVVTAFGFVLL--AL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  90 AMKLGLAPFHFWFPEVLQG-SPLITGLLLSTVMKFPP------MTLLFMTSHSLNPSLLTLM---AILSTALGGWMGMNQ 159
Cdd:PRK08375 213 ALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVyaliriYFTVFGGDFRFALGLGWLLavlALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 160 TQIRKILAFSSISHLGWMAMIISYSPKLTLLN--FYL--YALMTATVFLTLNSI-------KVSKLSILMTtwtKIPSLN 228
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIevtygtrRLSELSGLGR---RMPLTA 369

                        250       260
                 ....*....|....*....|....*....
gi 577702418 229 AMLLLTLLSLAGLPPLTGFLPKWLIIQEL 257
Cdd:PRK08375 370 AAFAVASLSLIGVPPTSGFVSKWYLVVGA 398
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 83-250 2.02e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.15  E-value: 2.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  83 LILTSAIAmKLGLAPFHFWFPEVLQGSPLITGLLLSTVM---------KFPPMtllFMTSHSLNPSLLTLmAILSTALGG 153
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLVL-GLATMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 154 WMGMNQTQIRKILAFSSISHLGWMAMIISYSPK------LTLLnfYLYALMTATVFLTLNSIKVS-------KLSILmtt 220
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIDHStgtrdirKLSGL--- 357

                        170       180       190
                 ....*....|....*....|....*....|
gi 577702418 221 WTKIPSLNAMLLLTLLSLAGLPPLTGFLPK 250
Cdd:PRK12644 358 GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 6-178 3.40e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 3.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   6 LTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSS----MNNAwhtgqwdiTQLTHPMS 81
Cdd:PRK06458 123 LALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyANAA--------TVMGDGEM 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  82 CLILTSAIAM----------------------KLGLAPFHFWFPEVLQGSP-----LITGLLLST----VMKFPPMTLLF 130
Cdd:PRK06458 195 AILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVLRYYILIDAA 274

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 577702418 131 MTSHSLNPsLLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMA 178
Cdd:PRK06458 275 IGSDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIA 321
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 79-258 1.85e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 46.10  E-value: 1.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  79 PMSCLILTSAI--AMKLGLapfHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPSLLTLMAI-----LSTAL 151
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFF 302

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 152 GGWMGMNQTQIRKILAFSSISHLGWMAMIISY--SPKLTLLNFYLYALMTATVFLTLNSI---------KVSKLSILMTT 220
Cdd:MTH00032 303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS 382

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 577702418 221 wtkIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIqELT 258
Cdd:MTH00032 383 ---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-206 3.14e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.52  E-value: 3.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHWITAWAGLEINTLAILPMISKSHHPRAIEAATKYFLTQATA------SALVLFSSMNNAWHTGQWDIT 74
Cdd:PRK08676 112 LSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWT 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  75 QLTHP----------MSCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPS----- 139
Cdd:PRK08676 192 ELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaaeq 271

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 140 ---LLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYALMTATVFLTL 206
Cdd:PRK08676 272 fsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGL 341
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 37-181 5.66e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.42  E-value: 5.66e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  37 PRAIEAATKYFLTQATASALVLFSSM----NNAWHTGQWDITQL-THPMSC-------LILTSAIAMKLGLAPFHFWFPE 104
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIylvvVYYNATGTFDIADLlNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 105 VLQGSPLITGLLLSTVM-KFPPMTLL-FM------TSHSLNPSLLTLmAILSTALGGWMGMNQTQIRKILAFSSISHLGW 176
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlKMGAYGLLrFSlplfpdASHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                 ....*
gi 577702418 177 MAMII 181
Cdd:PRK05846 316 VTLGI 320
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
42-190 1.06e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.54  E-value: 1.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  42 AATKYFLTQATASALVLFSSMNNAWHTG--QWDITQL---THPMSCLILTSA-----IAMKLGLAPFHFWFPEV-LQGSP 110
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 111 LITGLLLSTVMKFPPMTLL------FMTSHSLNPSLLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAMIISYS 184
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 577702418 185 PKLTLL 190
Cdd:PRK06473 318 TPLSIL 323
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 82-255 1.42e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.53  E-value: 1.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  82 CLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFMTSHSLNPSLLTLMAI-----LSTALGGWMG 156
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 157 MNQTQIRKILAFSSISHLGWMAMIISYSP-KLTLLNFYLYALMTATVFLTLNSI--------KVSKLSILMTTwtkIPSL 227
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACGLSHySISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLISF---LPLT 369

                        170       180
                 ....*....|....*....|....*...
gi 577702418 228 NAMLLLTLLSLAGLPPLTGFLPKWLIIQ 255
Cdd:MTH00020 370 YIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 97-253 1.67e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 43.37  E-value: 1.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  97 PFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLLFmtshSLNPSL---------LTLMAILSTALGGWMGMNQTQIRKILA 167
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLA----RLNPVLggtplwqtiLPLFGGLTMLTGALLAVRQTDLKLILA 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 168 FSSISHLGWMAMIISYSPKLTLLNFYLY----ALMTATVFLTLNSIK-------VSKLSILmttWTKIPSLNAMLLLTLL 236
Cdd:PRK12647 289 YSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAAL 365

                        170
                 ....*....|....*..
gi 577702418 237 SLAGLPPLTGFLPKWLI 253
Cdd:PRK12647 366 SMAGLPPLFGFLAKELI 382
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
42-255 2.75e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.39  E-value: 2.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  42 AATKYFLTQATASALVLFSSMNNAWHTGQWD------ITQLTHPMSCLILTSAI----AMKLGLAPFHFWFPEV-LQGSP 110
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 111 LITGLLLSTVMKFPPMTL------LFMTSHSLNPSLLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGW-------- 176
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYilvaaaag 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 177 --------MAMIISYSPKLTLLnFYLYALMTATVfltlNSIKVSKLSILMTTWTKIPSLNAMLLLTLLSLAGLPPLTGFL 248
Cdd:PRK07363 318 tqlsllgaVAQMISHGLILALL-FHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFV 392


                 ....*..
gi 577702418 249 PKWLIIQ 255
Cdd:PRK07363 393 AEFIVFQ 399
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
40-255 3.11e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.24  E-value: 3.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  40 IEAATKYFLTQATASALVL---------FSSMNNAWHTGQWDITQLTHPMSCL--ILTSAIAMKLGLAPFhFWFPEVLQG 108
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLlgigllygtFGTLNMAHIAMRLNDMGDTATLTTIalLFLLAFGMKAALFPF-MWLPAAYHT 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 109 SPLITGLLLSTVMK-------FPPMTLLFMTSHSLNPSLLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAMII 181
Cdd:PRK12663 236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGL 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 182 SYSPKLTLLN--FYLY---ALMTAtVFLTLNSIKV----SKLSILMTTWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWL 252
Cdd:PRK12663 316 ALGTPAGINGaiFYLVhdmVVKTA-LFLIAGSLVRltgyRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVL 394


                 ...
gi 577702418 253 IIQ 255
Cdd:PRK12663 395 LVQ 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 83-254 3.35e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.03  E-value: 3.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  83 LILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLS----TVMKFPPMTL--------LFMTSHSLNPSLLTLmAILSTA 150
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIvydvfkanFVFTTLPFNNVFMIL-AALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 151 LGGWMGMNQTQIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLY----ALMTATVFLTLNSIK----VSKLSILMTTWT 222
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371

                        170       180       190
                 ....*....|....*....|....*....|..
gi 577702418 223 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 254
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 35-179 4.07e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.06  E-value: 4.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  35 HHPRAIEAATKYFLTQAT------ASALVLFssmnnaWHTGQWDITQLTH------------PMSCLILTSAIAmKLGLA 96
Cdd:COG1009  156 EKPSARRAARKAFLVTRVgdlgllLGILLLG------AIAGTLNFSELLAaaptilssplltLILLLLLLGAFG-KSAQF 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  97 PFHFWFPEVLQG----SPLI-------TGLLLstVMKFPPmtlLFmtshSLNPSLLTLMAI--LSTAL-GGWMGMNQTQI 162
Cdd:COG1009  229 PLHFWLPDAMEGptpvSALLhaatmvkAGVYL--LARLSP---LF----ALSPVWLTVVAIigAITALfAALIALAQTDI 299

                        170
                 ....*....|....*..
gi 577702418 163 RKILAFSSISHLGWMAM 179
Cdd:COG1009  300 KRVLAYSTVSQLGYMFL 316
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
39-179 1.29e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.39  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  39 AIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHPMSCLILTSAIAMKLGLA----------------PFHFWF 102
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 103 PEVLQGSPLITGLLLSTVMKFPPMTLL--FMTSHSLNPSLLTLMAILSTA---LGGWMGMNQTQIRKILAFSSISHLGWM 177
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVarMYPVFEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYM 330


                 ..
gi 577702418 178 AM 179
Cdd:PRK07376 331 VM 332
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 20-258 1.48e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.94  E-value: 1.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  20 LEINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTH--PMSCLILTSAIAMKLGLAP 97
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  98 FHFWFPEVLQGSPLITGLLLS-TVMKFPPMTLLFMTSHSLNPSL-LTLMAILSTALGGWMGMNQTQIRKILAFSSISHLG 175
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVRCALDVPGLDLiVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 176 WmamiISYSPKLTLLNFYLYALMTATVFLTLNSIKVSKLSIL----MTTWTKIPSLNAmllltLLSLAGLPPLTGFLPKW 251
Cdd:PRK07234 283 F----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFTELisqmLGIGKWIPLTMA-----SFSIAGFPLLAGFVSKV 353


                 ....*..
gi 577702418 252 LIIQELT 258
Cdd:PRK07234 354 LTLKNLL 360
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 83-255 1.51e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 39.95  E-value: 1.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  83 LILTSAIAMKLGLAPFHFWFPEVLQGSP-LITGL---LLSTVMKFPPM---TLLFmTSHSLNpSLLTLMAILSTALGGWM 155
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPaPVTAVfagLLTKVGVYAIIrthTLLF-PGGGLD-TLLMVVALLTMVVGILG 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 156 GMNQTQIRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYA----LMTATVFLTLNSIK-------------VSKLSILM 218
Cdd:PRK12665 291 AIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVGLIErqagssslrrlggLAKASPLL 370

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 577702418 219 TTWTKIPSLNamllltllsLAGLPPLTGFLPKWLIIQ 255
Cdd:PRK12665 371 AVLFFVPALN---------LGGIPPFSGFIGKVALLE 398
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 42-175 1.57e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 40.01  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  42 AATKYFLTQATASALVLFSSMNNAWHTGQ--WDITQLTH---PMSCLILTS-----AIAMKLGLAPFHFWFPEV-----L 106
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAhgeasA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 577702418 107 QGSPLITGLLLST----VMKFPpMTLLFMTSHSLNPSLLTLmAILSTALGGWMGMNQTQIRKILAFSSISHLG 175
Cdd:PRK12561 218 PVSMILAGVLLKMggyaLIRFN-VQMLPDAHVYFAPALAIL-GVVNIIYGALNAFAQDNVKRRLAYSSVSHMG 288
PRK12650 PRK12650
DUF4040 family protein;
85-250 1.60e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.03  E-value: 1.60e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  85 LTSAIAMKLGLA--------PFHFWFPEVLQG-SPLITGLLLSTVMKFPPMTLL-FMTSHSLNP--SLLTLMAILSTAL- 151
Cdd:PRK12650 206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLrFSPVFHDVAvwNWLLIIVGMITALm 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 152 GGWMGMNQTQIRKILAFSSISHLGWM-AMIISYSP-KLT--LLNFYLYALMTATVFLTLNSIK-------VSKLSILmtt 220
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIGVVDhqagtrdIRRLGSL--- 362

                        170       180       190
                 ....*....|....*....|....*....|
gi 577702418 221 WTKIPSLNAMLLLTLLSLAGLPPLTGFLPK 250
Cdd:PRK12650 363 WRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 88-220 1.72e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.90  E-value: 1.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  88 AIAMKLGLAPFHFWFPEV-----LQGSPLITGLLLS------TVMKFPpmtLLFMTSHSLNPSLLTlMAILSTALGGWMG 156
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglVRLSWP---ILPLGAQNLAPAVIA-MGIVGIVYGSFAT 314

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 577702418 157 MNQTQIRKILAFSSISHLGWMAmiisyspkLTLLNFYLYALmTATVFLTLNSIKVSKLSILMTT 220
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVS--------ITLVTHDIIGL-TGSIFIMLAHGIVSSLLFILVT 369
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
21-255 2.33e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.63  E-value: 2.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  21 EINTLAILPMISKSHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDITQ-----LTHPMSCLILTSAIAMKLGL 95
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  96 A------PFHFWFPEVLQGSPLITGLLLSTVMKF---PPMTLLFMTSHSLN--PS---LLTLMAILSTALGGWMGMNQTQ 161
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFvlvALMLVIFKLFGGLSyfPSaqgVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 162 IRKILAFSSISHLGWMAMIISYSPKLTLLNFYLYA----LMTATVFLTLNSI----KVSKLSILMTTWTKIPSLNAMLLL 233
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260
                 ....*....|....*....|..
gi 577702418 234 TLLSLAGLPPLTGFLPKWLIIQ 255
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQ 391
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 42-257 5.36e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.56  E-value: 5.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  42 AATKYFLTQATASALVLFSSMNNAWHTGQWDITQLTHP-----MSCLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLL 116
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 117 LSTVM-KFPPMTLLFMTSHSLNPSL-----LTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAMIISYSPKLTLL 190
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPELwwgvlILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVY 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418 191 NFYLYALMT--ATVFLTLNSIKVSKL------SILMTTWTK-----------IPSLNAMLLLTLLSLAGLPPLTGFLPKW 251
Cdd:PRK08667 323 GLDTLALLAlgGALFHSLNHALFKSLlfltagSVVHATGTRniekmgglvklMPYTSALFLVGAVSIAALPPFNGFASEL 402


                 ....*.
gi 577702418 252 LIIQEL 257
Cdd:PRK08667 403 LLYESF 408
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-179 9.87e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 37.37  E-value: 9.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418   1 LLGTTLTISSNHW---ITAWAGLEI---NTLAILPmisksHHPRAIEAATKYFLTQATASALVLFSSMNNAWHTGQWDIT 74
Cdd:PRK08168 110 LAAVHLLVLSDHLlvlIAAWAAISLalhRLLCFYP-----DRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577702418  75 QL-----THPMS------CLILTSAIAMKLGLAPFHFWFPEVLQGSPLITGLLLSTVMKFPPMTLL-FMTSHSLNPS--- 139
Cdd:PRK08168 185 ALwahlaAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIrFAPLLEQAPParw 264

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 577702418 140 LLTLMAILSTALGGWMGMNQTQIRKILAFSSISHLGWMAM 179
Cdd:PRK08168 265 LLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLL 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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