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Conserved domains on  [gi|572994004|gb|AHF59415|]
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hypothetical protein HAS68_0737 [Streptococcus suis 05HAS68]

Protein Classification

VOC family protein( domain architecture ID 10170093)

vicinal oxygen chelate (VOC) family protein similar to Escherichia coli YaeR protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
VOC_Bs_YwkD_like cd08352
vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins; ...
4-128 7.69e-68

vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins; uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


:

Pssm-ID: 319940 [Multi-domain]  Cd Length: 123  Bit Score: 200.08  E-value: 7.69e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   4 DAVHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDILFNVKKGNLILEIFIKPDAPMRPamPNPEHTGLRHLAFQV 83
Cdd:cd08352    1 KKIHHIAIICSDYEKSKDFYVDKLGFEIIREHYRPERNDIKLDLALGGYQLELFIKPDAPARP--SYPEALGLRHLAFKV 78
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 572994004  84 ADVEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEIHE 128
Cdd:cd08352   79 EDVEATVAELKSLGIETEPIRVDDFTGKKFTFFFDPDGLPLELYE 123
 
Name Accession Description Interval E-value
VOC_Bs_YwkD_like cd08352
vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins; ...
4-128 7.69e-68

vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins; uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319940 [Multi-domain]  Cd Length: 123  Bit Score: 200.08  E-value: 7.69e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   4 DAVHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDILFNVKKGNLILEIFIKPDAPMRPamPNPEHTGLRHLAFQV 83
Cdd:cd08352    1 KKIHHIAIICSDYEKSKDFYVDKLGFEIIREHYRPERNDIKLDLALGGYQLELFIKPDAPARP--SYPEALGLRHLAFKV 78
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 572994004  84 ADVEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEIHE 128
Cdd:cd08352   79 EDVEATVAELKSLGIETEPIRVDDFTGKKFTFFFDPDGLPLELYE 123
PRK11478 PRK11478
VOC family protein;
6-128 1.20e-32

VOC family protein;


Pssm-ID: 183156 [Multi-domain]  Cd Length: 129  Bit Score: 111.53  E-value: 1.20e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   6 VHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPE----KNDILFNvkkGNLILEIFIKPDAPMRPAmpNPEHTGLRHLAF 81
Cdd:PRK11478   7 VHHIAIIATDYAVSKAFYCDILGFTLQSEVYREArdswKGDLALN---GQYVIELFSFPFPPERPS--RPEACGLRHLAF 81
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 572994004  82 QVADVEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEIHE 128
Cdd:PRK11478  82 SVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128
GloA COG0346
Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family [Secondary ...
6-128 9.92e-28

Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440115 [Multi-domain]  Cd Length: 125  Bit Score: 98.53  E-value: 9.92e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   6 VHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDILFNVKKGN-LILEIFIKPDAPmrpamPNPEHTGLRHLAFQVA 84
Cdd:COG0346    3 LHHVTLRVSDLEASLAFYTDVLGLELVKRTDFGDGGFGHAFLRLGDgTELELFEAPGAA-----PAPGGGGLHHLAFRVD 77
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 572994004  85 DVEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEIHE 128
Cdd:COG0346   78 DLDAAYARLRAAGVEIEGEPRDRAYGYRSAYFRDPDGNLIELVE 121
Glyoxalase pfam00903
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;
6-126 5.34e-16

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;


Pssm-ID: 395724 [Multi-domain]  Cd Length: 121  Bit Score: 68.63  E-value: 5.34e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004    6 VHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKND-ILFNVKKGNLILEIFIKPDAPmrPAMPNPEHTGLRHLAFQVA 84
Cdd:pfam00903   2 IDHVALRVGDLEKSLDFYTDVLGFKLVEETDAGEEGGlRSAFFLAGGRVLELLLNETPP--PAAAGFGGHHIAFIAFSVD 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 572994004   85 DVEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEI 126
Cdd:pfam00903  80 DVDAAYDRLKAAGVEIVREPGRHGWGGRYSYFRDPDGNLIEL 121
 
Name Accession Description Interval E-value
VOC_Bs_YwkD_like cd08352
vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins; ...
4-128 7.69e-68

vicinal oxygen chelate (VOC) family protein Bacillus subtilis YwkD and similar proteins; uncharacterized subfamily of vicinal oxygen chelate (VOC) family contains Bacillus subtilis YwkD and similar proteins. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319940 [Multi-domain]  Cd Length: 123  Bit Score: 200.08  E-value: 7.69e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   4 DAVHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDILFNVKKGNLILEIFIKPDAPMRPamPNPEHTGLRHLAFQV 83
Cdd:cd08352    1 KKIHHIAIICSDYEKSKDFYVDKLGFEIIREHYRPERNDIKLDLALGGYQLELFIKPDAPARP--SYPEALGLRHLAFKV 78
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 572994004  84 ADVEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEIHE 128
Cdd:cd08352   79 EDVEATVAELKSLGIETEPIRVDDFTGKKFTFFFDPDGLPLELYE 123
PRK11478 PRK11478
VOC family protein;
6-128 1.20e-32

VOC family protein;


Pssm-ID: 183156 [Multi-domain]  Cd Length: 129  Bit Score: 111.53  E-value: 1.20e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   6 VHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPE----KNDILFNvkkGNLILEIFIKPDAPMRPAmpNPEHTGLRHLAF 81
Cdd:PRK11478   7 VHHIAIIATDYAVSKAFYCDILGFTLQSEVYREArdswKGDLALN---GQYVIELFSFPFPPERPS--RPEACGLRHLAF 81
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 572994004  82 QVADVEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEIHE 128
Cdd:PRK11478  82 SVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128
GloA COG0346
Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family [Secondary ...
6-128 9.92e-28

Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440115 [Multi-domain]  Cd Length: 125  Bit Score: 98.53  E-value: 9.92e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   6 VHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDILFNVKKGN-LILEIFIKPDAPmrpamPNPEHTGLRHLAFQVA 84
Cdd:COG0346    3 LHHVTLRVSDLEASLAFYTDVLGLELVKRTDFGDGGFGHAFLRLGDgTELELFEAPGAA-----PAPGGGGLHHLAFRVD 77
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 572994004  85 DVEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEIHE 128
Cdd:COG0346   78 DLDAAYARLRAAGVEIEGEPRDRAYGYRSAYFRDPDGNLIELVE 121
Glyoxalase pfam00903
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;
6-126 5.34e-16

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;


Pssm-ID: 395724 [Multi-domain]  Cd Length: 121  Bit Score: 68.63  E-value: 5.34e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004    6 VHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKND-ILFNVKKGNLILEIFIKPDAPmrPAMPNPEHTGLRHLAFQVA 84
Cdd:pfam00903   2 IDHVALRVGDLEKSLDFYTDVLGFKLVEETDAGEEGGlRSAFFLAGGRVLELLLNETPP--PAAAGFGGHHIAFIAFSVD 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 572994004   85 DVEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEI 126
Cdd:pfam00903  80 DVDAAYDRLKAAGVEIVREPGRHGWGGRYSYFRDPDGNLIEL 121
VOC cd06587
vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed ...
8-126 7.55e-14

vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.


Pssm-ID: 319898 [Multi-domain]  Cd Length: 112  Bit Score: 62.93  E-value: 7.55e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   8 HIAIIGSDYDKTREFYVEKLGFEQVDehiRPEKNDILFNVKKGNLILEIFIkpdapmRPAMPNPEHTGLRHLAFQVADVE 87
Cdd:cd06587    1 HVALRVPDLDASVAFYEEVLGFEVVS---RNEGGGFAFLRLGPGLRLALLE------GPEPERPGGGGLFHLAFEVDDVD 71
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 572994004  88 ACLEEFDRLDIRHEVL--RTDDFDGKKMAFFFDPDGLPLEI 126
Cdd:cd06587   72 EVDERLREAGAEGELVapPVDDPWGGRSFYFRDPDGNLIEF 112
CatE COG2514
Catechol-2,3-dioxygenase [Secondary metabolites biosynthesis, transport and catabolism];
5-126 1.88e-13

Catechol-2,3-dioxygenase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442004 [Multi-domain]  Cd Length: 141  Bit Score: 62.67  E-value: 1.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   5 AVHHIAIIGSDYDKTREFYVEKLGFEQVDEhirpEKNDILFNVKKGNLILEIFIKPDAPmrpamPNPEHTGLRHLAFQV- 83
Cdd:COG2514    3 RLGHVTLRVRDLERSAAFYTDVLGLEVVER----EGGRVYLRADGGEHLLVLEEAPGAP-----PRPGAAGLDHVAFRVp 73
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 572994004  84 --ADVEACLEEFDRLDIRHEvlRTDDFDGKKMAFFFDPDGLPLEI 126
Cdd:COG2514   74 srADLDAALARLAAAGVPVE--GAVDHGVGESLYFRDPDGNLIEL 116
VOC_ShValD_like cd16361
vicinal oxygen chelate (VOC) family protein similar to Streptomyces hygroscopicus ValD protein; ...
5-126 2.60e-11

vicinal oxygen chelate (VOC) family protein similar to Streptomyces hygroscopicus ValD protein; This subfamily of vicinal oxygen chelate (VOC) family protein includes Streptomyces hygroscopicus ValD protein and similar proteins. ValD protein functions in validamycin biosynthetic pathway. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319968  Cd Length: 150  Bit Score: 56.96  E-value: 2.60e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   5 AVHHIAIIGSDYDKTREFYVEKLGFEQV---------DEHIRPEKNDILFN---------VKKGNLI-LEIFIKPDAPMR 65
Cdd:cd16361    1 GVNHVGITVPDLDAAVEFYTDVLGAEVVyrstplaegDRGGGEMRAAGFVPgfarariamLRLGPGPgIELFEYKGPEQR 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 572994004  66 PAMPNPEHTGLRHLAFQVADVEACLEEFD------RLDIRhEVLRTDDFDGKKMAFFFDPDGLPLEI 126
Cdd:cd16361   81 APVPRNSDVGIFHFALQVDDVEAAAERLAaaggkvLMGPR-EIPDGGPGKGNRMVYLRDPWGTLIEL 146
VOC_like cd07245
uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate ...
6-126 8.25e-10

uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319909 [Multi-domain]  Cd Length: 117  Bit Score: 52.32  E-value: 8.25e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   6 VHHIAIIGSDYDKTREFYVEKLGFEQVDehiRPE--KNDIL-FNVKKGNLILEIFIKPDAPmrpaMPNPEHTG-LRHLAF 81
Cdd:cd07245    1 LDHVALACPDLERARRFYTDVLGLEEVP---RPPflKFGGAwLYLGGGQQIHLVVEQNPSE----LPRPEHPGrDRHPSF 73
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 572994004  82 QVADVEACLEEFDRLDIrHEVLRTDDFDGKKMAFFFDPDGLPLEI 126
Cdd:cd07245   74 SVPDLDALKQRLKEAGI-PYTESTSPGGGVTQLFFRDPDGNRLEF 117
VOC COG3324
Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family [General function ...
5-128 1.36e-09

Lactoylglutathione lyase-related enzyme, vicinal oxygen chelate (VOC) family [General function prediction only];


Pssm-ID: 442553 [Multi-domain]  Cd Length: 119  Bit Score: 51.95  E-value: 1.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   5 AVHHIAIIGSDYDKTREFYVEKLGFEqVDEHIRPEKNDILFNVKKGnLILEIFIKPDAPMRPAMpnpehtglrHLAFQVA 84
Cdd:COG3324    4 TIVWVELPVDDLERAKAFYEEVFGWT-FEDDAGPGGDYAEFDTDGG-QVGGLMPGAEEPGGPGW---------LLYFAVD 72
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 572994004  85 DVEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEIHE 128
Cdd:COG3324   73 DLDAAVARVEAAGGTVLRPPTDIPPWGRFAVFRDPEGNRFGLWQ 116
Glyoxalase_4 pfam13669
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;
7-99 6.54e-09

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;


Pssm-ID: 463951 [Multi-domain]  Cd Length: 109  Bit Score: 49.97  E-value: 6.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004    7 HHIAIIGSDYDKTREFYVEKLGFEQ-VDEHIRPEKNDILFnVKKGNLILEI-FIKPDAPmrPAMPNPEHTGLRHLAFQVA 84
Cdd:pfam13669   1 HHVGIAVPDLDRALALWGALLGLGPeGDYRSEPQNVDLAF-ALLGDGPVEVeLIQPLDG--DSPLARHGPGLHHLAYWVD 77
                          90
                  ....*....|....*
gi 572994004   85 DVEACLEEFDRLDIR 99
Cdd:pfam13669  78 DLDAAVARLLDQGYR 92
VOC_like cd07264
uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate ...
8-128 4.36e-08

uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319925 [Multi-domain]  Cd Length: 118  Bit Score: 48.10  E-value: 4.36e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   8 HIAIIGSDYDKTREFYVEKLGFEqvdehIRPEKNDILF-NVKKGNLILEIF-IKPDAPMRPAMPNPEHtglRHLAFQVAD 85
Cdd:cd07264    3 YIVLYVDDFAASLRFYRDVLGLP-----PRFLHEEGEYaEFDTGETKLALFsRKEMARSGGPDRRGSA---FELGFEVDD 74
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 572994004  86 VEACLEEFDRLDIRHEVLRTDDFDGKKMAFFFDPDGLPLEIHE 128
Cdd:cd07264   75 VEATVEELVERGAEFVREPANKPWGQTVAYVRDPDGNLIEICE 117
VOC_BsYyaH cd07241
vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YyaH; The vicinal ...
6-126 4.43e-07

vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YyaH; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319905  Cd Length: 125  Bit Score: 45.48  E-value: 4.43e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   6 VHHIAIIGSDYDKTREFYVEKLGfeqvdehirPEKNDILFNVKKG----------NLILEIFIKPDapMRPAMPNPEHTG 75
Cdd:cd07241    2 IEHVALWTNDLERMKDFYVKYFG---------AESNDIYHNKKKGfrsyfltfdsGARLELMSRPD--VTDPDKEVERTG 70
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 572994004  76 LRHLAFQVADVEACLEEFDRldirhevLRTDDF----------DGKKMAFFFDPDGLPLEI 126
Cdd:cd07241   71 LAHIAFSVGSKEAVDELTER-------LRADGYavvggprttgDGYYESVILDPEGNRIEI 124
PhnB COG2764
Zn-dependent glyoxalase, PhnB family [Energy production and conversion];
15-128 2.19e-06

Zn-dependent glyoxalase, PhnB family [Energy production and conversion];


Pssm-ID: 442048 [Multi-domain]  Cd Length: 118  Bit Score: 43.31  E-value: 2.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004  15 DYDKTREFYVEKLGFEQVDEHIRPEkNDILF-NVKKGNLILEIFikpDAPmrPAMPNPEHTGLrHLAFQVADVEAcleEF 93
Cdd:COG2764   10 DAEEALEFYEDVFGFEVVFRMTDPD-GKIMHaELRIGGSVLMLS---DAP--PDSPAAEGNGV-SLSLYVDDVDA---LF 79
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 572994004  94 DRL-----DIRHEVlrTDDFDGKKMAFFFDPDGLPLEIHE 128
Cdd:COG2764   80 ARLvaagaTVVMPL--QDTFWGDRFGMVRDPFGVLWMINT 117
VOC_like cd07263
uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate ...
8-121 3.82e-06

uncharacterized subfamily of vicinal oxygen chelate (VOC) family; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping


Pssm-ID: 319924 [Multi-domain]  Cd Length: 120  Bit Score: 42.67  E-value: 3.82e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   8 HIAIIGSDYDKTREFYVEKLGFEqVDEHIRPEKNDILFNVKKGNLILEIFIKPDAPMRPAMPNPEHTG-LRHLAFQVADV 86
Cdd:cd07263    1 QVMLYVDDQDKALDFYVEKLGFE-VVEDVPMGGMRWVTVAPPGSPGTSLLLEPKAHPAQMPQSPEAAGgTPGILLATDDI 79
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 572994004  87 EAcleEFDRLDIRH-EVLR-TDDFDGKKMAFFFDPDG 121
Cdd:cd07263   80 DA---TYERLTAAGvTFVQePTQMGGGRVANFRDPDG 113
MMCE cd07249
Methylmalonyl-CoA epimerase (MMCE); MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) ...
6-121 4.56e-06

Methylmalonyl-CoA epimerase (MMCE); MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.


Pssm-ID: 319912 [Multi-domain]  Cd Length: 127  Bit Score: 42.95  E-value: 4.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   6 VHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDILFNVKKGNLILEIF--IKPDAPMRPAMPNPeHTGLRHLAFQV 83
Cdd:cd07249    1 LDHIGIAVPDLDEALKFYEDVLGVKVSEPEELEEQGVRVAFLELGNTQIELLepLGEDSPIAKFLDKK-GGGLHHIAFEV 79
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 572994004  84 ADVEACLEEFDRLDIR--HEVLRtDDFDGKKMAFFFDPDG 121
Cdd:cd07249   80 DDIDAAVEELKAQGVRllSEGPR-IGAHGKRVAFLHPKDT 118
HPCD_N_class_II cd07266
N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); This subfamily ...
8-125 1.46e-04

N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a different superfamily.


Pssm-ID: 319927  Cd Length: 118  Bit Score: 38.54  E-value: 1.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   8 HIAIIGSDYDKTREFYVEKLGFEQVDEhirpEKNDILF----NVKKGNLILEifiKPDAPmrpampnpehtGLRHLAFQV 83
Cdd:cd07266    7 HAELVVTDLAASREFYVDTLGLHVTDE----DDNAIYLrgveEFIHHTLVLR---KAPEA-----------AVGHLGFRV 68
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 572994004  84 ---ADVEACLEEFDRLDIRHEvlRTDDFDGKKMAFFFDPDGLPLE 125
Cdd:cd07266   69 rdeADLDKAAAFYKELGLPTE--WREEPGQGRTLRVEDPFGFPIE 111
GlxI_Zn cd07233
Glyoxalase I that uses Zn(++) as cofactor; This family includes eukaryotic glyoxalase I that ...
70-126 1.85e-04

Glyoxalase I that uses Zn(++) as cofactor; This family includes eukaryotic glyoxalase I that prefers the divalent cation zinc as cofactor. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic glyoxalase I uses nickel. However, eukaryotic Trypanosomatid parasites also use nickel as a cofactor, which could possibly be explained by acquiring their GLOI gene by horizontal gene transfer. Human glyoxalase I is a two-domain enzyme and it has the structure of a domain-swapped dimer with two active sites located at the dimer interface. In yeast, in various plants, insects and Plasmodia, glyoxalase I is four-domain, possibly the result of a further gene duplication and an additional gene fusing event.


Pssm-ID: 319900 [Multi-domain]  Cd Length: 142  Bit Score: 38.85  E-value: 1.85e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 572994004  70 NPEHTGLRHLAFQVADVEACLEEFDRLDIRHeVLRTDDFDGKKMAFFFDPDGLPLEI 126
Cdd:cd07233   86 NSDPRGFGHIGIAVDDVYAACERFEELGVKF-KKKPDDGKMKGIAFIKDPDGYWIEI 141
PLN02367 PLN02367
lactoylglutathione lyase
70-126 1.94e-04

lactoylglutathione lyase


Pssm-ID: 177995  Cd Length: 233  Bit Score: 39.21  E-value: 1.94e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 572994004  70 NPEHTGLRHLAFQVADVEACLEEFDRLDIRHeVLRTDDFDGKKMAFFFDPDGLPLEI 126
Cdd:PLN02367 164 NSEPRGFGHIGITVDDVYKACERFEELGVEF-VKKPNDGKMKGIAFIKDPDGYWIEI 219
FosA cd07244
fosfomycin resistant protein subfamily FosA; This subfamily family contains FosA, a fosfomycin ...
8-127 2.13e-04

fosfomycin resistant protein subfamily FosA; This subfamily family contains FosA, a fosfomycin resistant protein. FosA is a Mn(II) and K(+)-dependent glutathione transferase. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.


Pssm-ID: 319908 [Multi-domain]  Cd Length: 121  Bit Score: 38.03  E-value: 2.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   8 HIAIIGSDYDKTREFYVEKLGFEQvdeHIRPEKNDILFNvkkGNLILEIFIKPDAPmrpamPNPEHTglrHLAFQVADve 87
Cdd:cd07244    4 HITLAVSDLERSLAFYVDLLGFKP---HVRWDKGAYLTA---GDLWLCLSLDPAAE-----PSPDYT---HIAFTVSE-- 67
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 572994004  88 aclEEFDRLDIRHEVLRTDDF-----DGKKMaFFFDPDGLPLEIH 127
Cdd:cd07244   68 ---EDFEELSERLRAAGVKIWqenssEGDSL-YFLDPDGHKLELH 108
VOC_BsYqjT cd07242
vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YqjT; The vicinal ...
5-126 2.91e-04

vicinal oxygen chelate (VOC) family protein similar to Bacillus subtilis YqjT; The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.


Pssm-ID: 319906  Cd Length: 126  Bit Score: 37.85  E-value: 2.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   5 AVHHIAIIGSDYDKTREFYvEKLGFEQVDEHIRPEKNDILFNVKKGNLILEifikpdapMRPAMPNPEH----TGLRHLA 80
Cdd:cd07242    1 GVSHVELAVSDLHRSFKWF-EWILGLGWKEYDTWSFGPSWKLSGGSLLVVQ--------QTDEFATPEFdrarVGLNHLA 71
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 572994004  81 FQVADVEACLEEFDRLDIRHEVLRTDD------FDGKKMAFFFDPDGLPLEI 126
Cdd:cd07242   72 FHAESREAVDELTEKLAKIGGVRTYGDrhpfagGPPHYAAFCEDPDGIKLEL 123
ED_TypeI_classII_N cd16360
N-terminal domain of type I, class II extradiol dioxygenases; This family contains the ...
8-125 9.29e-04

N-terminal domain of type I, class II extradiol dioxygenases; This family contains the N-terminal non-catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are type I, class II enzymes, and are composed of the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. A catalytically essential metal, Fe(II) or Mn(II), presents in all the enzymes in this family.


Pssm-ID: 319967  Cd Length: 111  Bit Score: 36.14  E-value: 9.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   8 HIAIIGSDYDKTREFYVEKLGFEQVDEhirpEKNDILF---NVKKGNLILEifikpdapmrpampNPEHTGLRHLAFQVA 84
Cdd:cd16360    1 YAELGVPDLEKALEFYTDVLGLQVAKR----DGNSVYLrgyEDEHHSLVLY--------------EAPEAGLKHFAFEVA 62
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 572994004  85 ---DVEACLEEFDRLDIRHEVLRTDDFDGKKMAF-FFDPDGLPLE 125
Cdd:cd16360   63 seeDLERAAASLTALGCDVTWGPDGEVPGGGKGFrFQDPSGHLLE 107
ED_TypeI_classII_C cd08343
C-terminal domain of type I, class II extradiol dioxygenases, catalytic domain; This family ...
8-121 1.89e-03

C-terminal domain of type I, class II extradiol dioxygenases, catalytic domain; This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are type I, class II enzymes, and are composed of the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. A catalytically essential metal, Fe(II) or Mn(II), presents in all the enzymes in this family.


Pssm-ID: 319931  Cd Length: 132  Bit Score: 35.76  E-value: 1.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   8 HIAIIGSDYDKTREFYVEKLGFEQVDEhIRPEKNDILfnvkkgnlileIFIKPDAPM---RPAMPNPEHTGLRHLAFQVA 84
Cdd:cd08343    2 HVVLCSPDVEASRDFYTDVLGFRVSDR-IVDPGVDGG-----------AFLHCDRGTdhhTVALAGGPHPGLHHVAFEVH 69
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 572994004  85 DVEACLEEFDRL---DIRHE------VLRTDDFDgkkmaFFFDPDG 121
Cdd:cd08343   70 DLDDVGRGHDRLrekGYKIEwgpgrhGLGSQVFD-----YWFDPSG 110
HPPD_N_like cd08342
N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase ...
6-92 3.27e-03

N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS); HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, substrates, do not use alpha-ketoglutarate, and incorporate both atoms of dioxygen into the aromatic product. Both HPPD and HmaS exhibit duplicate beta barrel topology in their N- and C-terminal domains which share sequence similarity, suggestive of a gene duplication. Each protein has only one catalytic site located in at the C-terminal domain. This HPPD_N_like domain represents the N-terminal domain.


Pssm-ID: 319930  Cd Length: 141  Bit Score: 35.26  E-value: 3.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   6 VHHIAIIGSDYDKTREFYVEKLGFEQVDEHIRPEKNDILFNVKKGNLILeIFIKPDAPMRPAMPNPEH--TGLRHLAFQV 83
Cdd:cd08342    1 FDHVEFYVGNAKQAASYYSTGLGFEPVAYHGLETREKASHVLRQGDIRF-VFTSPLSSDAPAADFLAKhgDGVKDVAFRV 79

                 ....*....
gi 572994004  84 ADVEACLEE 92
Cdd:cd08342   80 EDADAAYER 88
BphC1-RGP6_C_like cd07237
C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase; This subfamily contains the ...
8-34 5.82e-03

C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase; This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in this subfamily. BphC2-RGP6 and BphC3-RGP6 are one-domain dioxygenases, they belong to a different subfamily of the ED_TypeI_classII_C (C-terminal domain of type I, class II extradiol dioxygenases) family.


Pssm-ID: 319902  Cd Length: 153  Bit Score: 34.56  E-value: 5.82e-03
                         10        20
                 ....*....|....*....|....*..
gi 572994004   8 HIAIIGSDYDKTREFYVEKLGFEQVDE 34
Cdd:cd07237   12 HVVLIVPDVDEALAFYTDVLGFRLSDE 38
Fosfomycin_RP cd08345
Fosfomycin resistant protein; This family contains three types of fosfomycin resistant protein. ...
8-127 8.04e-03

Fosfomycin resistant protein; This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.


Pssm-ID: 319933  Cd Length: 118  Bit Score: 34.07  E-value: 8.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 572994004   8 HIAIIGSDYDKTREFYVEKLGFEQV---DEHIRPEKNDILFNVkkGNLILEIFIKPDAPMRpampnpehtGLRHLAFQVA 84
Cdd:cd08345    1 HITLIVRDLEKSTAFLQDIFGAREVyssGDKTFSLSKEKFFLL--GGLWIALMEGESLQER---------SYTHIAFQIQ 69
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 572994004  85 DveaclEEFDRLDIRHEVL--------RTDDFDGKKMaFFFDPDGLPLEIH 127
Cdd:cd08345   70 S-----EDFDRYAERLGALgvemrpprPRVEGEGRSI-YFYDPDNHLFELH 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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