|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-213 |
1.76e-157 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 440.49 E-value: 1.76e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00119 37 LLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00119 117 GVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLI 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00119 197 HLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPN 249
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-213 |
1.21e-83 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 253.17 E-value: 1.21e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYlyKE---- 76
Cdd:COG1290 45 LALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprel 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 77 TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLIA 155
Cdd:COG1290 123 NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLL 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 57235481 156 GITLIHLTFLHESGSNNPLGI----ISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:COG1290 203 ALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-171 |
1.06e-81 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 241.89 E-value: 1.06e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSY--LYKETW 78
Cdd:cd00284 28 LLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTW 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 79 NTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGIT 158
Cdd:cd00284 108 VIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIV 187
|
170
....*....|...
gi 57235481 159 LIHLTFLHESGSN 171
Cdd:cd00284 188 ILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-169 |
2.18e-70 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 212.63 E-value: 2.18e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYG--SYLYKETW 78
Cdd:pfam00033 19 LLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTW 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 79 NTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGIT 158
Cdd:pfam00033 99 VIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILM 178
|
170
....*....|.
gi 57235481 159 LIHLTFLHESG 169
Cdd:pfam00033 179 LLHLLFLHETG 189
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-213 |
1.76e-157 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 440.49 E-value: 1.76e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00119 37 LLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00119 117 GVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLI 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00119 197 HLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPN 249
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-213 |
4.26e-142 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 401.34 E-value: 4.26e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00131 36 LLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNI 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00131 116 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATIL 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00131 196 HLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPN 248
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-213 |
2.91e-139 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 394.39 E-value: 2.91e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00100 36 LLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNI 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00100 116 GIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMV 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00100 196 HLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPD 248
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-213 |
1.69e-137 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 389.81 E-value: 1.69e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00074 37 LLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00074 117 GVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASII 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00074 197 HLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPN 249
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-213 |
2.69e-137 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 388.37 E-value: 2.69e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00156 26 LLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00156 106 GVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMI 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00156 186 HLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPY 238
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-213 |
3.46e-134 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 380.80 E-value: 3.46e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00191 33 LLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00191 113 GVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLI 192
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00191 193 HLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPN 245
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-213 |
1.22e-130 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 372.32 E-value: 1.22e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00145 37 LLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00145 117 GVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVL 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00145 197 HLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPN 249
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-213 |
3.77e-122 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 350.90 E-value: 3.77e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00016 37 LLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00016 117 GVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMI 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00016 197 HLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPN 249
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-213 |
1.65e-120 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 346.69 E-value: 1.65e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00034 36 LLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNI 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00034 116 GVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSII 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00034 196 HLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPT 248
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-213 |
1.90e-103 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 303.38 E-value: 1.90e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00224 37 LLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00224 117 GVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATIL 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00224 197 HIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPN 249
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-212 |
2.17e-99 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 293.15 E-value: 2.17e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00053 37 LLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00053 117 GVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALV 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSP 212
Cdd:MTH00053 197 HLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFP 248
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-213 |
2.32e-98 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 290.45 E-value: 2.32e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00022 35 LLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNV 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00022 115 GVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIV 194
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00022 195 HLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPN 247
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-213 |
1.21e-83 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 253.17 E-value: 1.21e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYlyKE---- 76
Cdd:COG1290 45 LALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprel 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 77 TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLIA 155
Cdd:COG1290 123 NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLL 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 57235481 156 GITLIHLTFLHESGSNNPLGI----ISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:COG1290 203 ALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-171 |
1.06e-81 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 241.89 E-value: 1.06e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSY--LYKETW 78
Cdd:cd00284 28 LLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTW 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 79 NTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGIT 158
Cdd:cd00284 108 VIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIV 187
|
170
....*....|...
gi 57235481 159 LIHLTFLHESGSN 171
Cdd:cd00284 188 ILHLLFLHEQGSS 200
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-207 |
2.57e-80 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 244.46 E-value: 2.57e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00033 33 LLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIV 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00033 113 GVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLA 192
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTL 207
Cdd:MTH00033 193 HLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVII 239
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-212 |
6.60e-71 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 219.43 E-value: 6.60e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00086 25 MLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWIS 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00086 105 GLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLF 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 57235481 161 HLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIpLLTLTFFSP 212
Cdd:MTH00086 185 HLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYP 235
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-169 |
2.18e-70 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 212.63 E-value: 2.18e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYG--SYLYKETW 78
Cdd:pfam00033 19 LLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTW 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 79 NTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGIT 158
Cdd:pfam00033 99 VIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILM 178
|
170
....*....|.
gi 57235481 159 LIHLTFLHESG 169
Cdd:pfam00033 179 LLHLLFLHETG 189
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-213 |
5.15e-57 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 184.03 E-value: 5.15e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 1 LLGICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNT 80
Cdd:MTH00046 27 VLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 81 GIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGITLI 160
Cdd:MTH00046 107 GFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVV 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 57235481 161 HLTFLHESGSNNPLGII-SHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:MTH00046 187 HLFYLHKSGSSNPLFSSnGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
53-213 |
4.27e-44 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 145.08 E-value: 4.27e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 53 SFFFICIYLHIGRGFYYGSYLYKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 130
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 131 GGFSVDNPTLTRFFALHF-LLPFLIAGITLIHLTFLHESGSNNPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTF 209
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....
gi 57235481 210 FSPN 213
Cdd:pfam13631 161 INPI 164
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
4-174 |
2.41e-36 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 126.75 E-value: 2.41e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 4 ICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKE--TWNTG 81
Cdd:PRK03735 50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 82 IILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLIAGITLI 160
Cdd:PRK03735 130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLA 209
|
170
....*....|....
gi 57235481 161 HLTFLHESGSNNPL 174
Cdd:PRK03735 210 HFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
4-174 |
6.10e-33 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 117.90 E-value: 6.10e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 4 ICLITQILTGLLLAMHYTADTSLAFSSIAHICRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKE--TWNTG 81
Cdd:CHL00070 42 TCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTG 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 57235481 82 IILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLIAGITLI 160
Cdd:CHL00070 122 VVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLM 201
|
170
....*....|....
gi 57235481 161 HLTFLHESGSNNPL 174
Cdd:CHL00070 202 HFLMIRKQGISGPL 215
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
172-213 |
1.34e-06 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 46.10 E-value: 1.34e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 57235481 172 NPLGIISHCDKIPFHPYFSLKDILGFTLMLIPLLTLTFFSPN 213
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPN 42
|
|
|