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Conserved domains on  [gi|571795706|gb|AHF48117|]
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movement protein [Cardamom bushy dwarf virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Babuvirus_MP super family cl06321
Movement and RNA silencing protein; This family consists of several Babuvirus proteins of ...
 1-117 1.10e-46

Movement and RNA silencing protein; This family consists of several Babuvirus proteins of around 120 residues in length. Proteins in this family include movement and RNA silencing protein (also known as MP) from Banana bunchy top virus. MP acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs. It transports viral genome to neighbouring plant cells directly through plasmosdesmata, without any budding. The movement protein allows efficient cell to cell propagation, by bypassing the host cell wall barrier.


The actual alignment was detected with superfamily member pfam07234:

Pssm-ID: 284616  Cd Length: 117  Bit Score: 145.96  E-value: 1.10e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571795706    1 MGLSGERVKSFFEWFLFFVAIFVAITIFYILLALLLEIPRYIKDLVKYGVEYATRRRVWMRRTQLTEATGGVGRNEGGGD 80
Cdd:pfam07234   1 MALTTERVKLFFEWFLFFGAIFIAITILYILLVLLFEVPRYIKELVRCLVEYLTRRRVWMQRTQLTEATGDVEIGRGIVE 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 571795706   81 DRLEMTQSVVPAVSQVIQQNPNRRDDQGRRNNTGPTF 117
Cdd:pfam07234  81 DRRDQEPAVIPHVSQVIPSQPNRRDDQGRRGNAGPMF 117
 
Name Accession Description Interval E-value
Babuvirus_MP pfam07234
Movement and RNA silencing protein; This family consists of several Babuvirus proteins of ...
 1-117 1.10e-46

Movement and RNA silencing protein; This family consists of several Babuvirus proteins of around 120 residues in length. Proteins in this family include movement and RNA silencing protein (also known as MP) from Banana bunchy top virus. MP acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs. It transports viral genome to neighbouring plant cells directly through plasmosdesmata, without any budding. The movement protein allows efficient cell to cell propagation, by bypassing the host cell wall barrier.


Pssm-ID: 284616  Cd Length: 117  Bit Score: 145.96  E-value: 1.10e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571795706    1 MGLSGERVKSFFEWFLFFVAIFVAITIFYILLALLLEIPRYIKDLVKYGVEYATRRRVWMRRTQLTEATGGVGRNEGGGD 80
Cdd:pfam07234   1 MALTTERVKLFFEWFLFFGAIFIAITILYILLVLLFEVPRYIKELVRCLVEYLTRRRVWMQRTQLTEATGDVEIGRGIVE 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 571795706   81 DRLEMTQSVVPAVSQVIQQNPNRRDDQGRRNNTGPTF 117
Cdd:pfam07234  81 DRRDQEPAVIPHVSQVIPSQPNRRDDQGRRGNAGPMF 117
 
Name Accession Description Interval E-value
Babuvirus_MP pfam07234
Movement and RNA silencing protein; This family consists of several Babuvirus proteins of ...
 1-117 1.10e-46

Movement and RNA silencing protein; This family consists of several Babuvirus proteins of around 120 residues in length. Proteins in this family include movement and RNA silencing protein (also known as MP) from Banana bunchy top virus. MP acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs. It transports viral genome to neighbouring plant cells directly through plasmosdesmata, without any budding. The movement protein allows efficient cell to cell propagation, by bypassing the host cell wall barrier.


Pssm-ID: 284616  Cd Length: 117  Bit Score: 145.96  E-value: 1.10e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571795706    1 MGLSGERVKSFFEWFLFFVAIFVAITIFYILLALLLEIPRYIKDLVKYGVEYATRRRVWMRRTQLTEATGGVGRNEGGGD 80
Cdd:pfam07234   1 MALTTERVKLFFEWFLFFGAIFIAITILYILLVLLFEVPRYIKELVRCLVEYLTRRRVWMQRTQLTEATGDVEIGRGIVE 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 571795706   81 DRLEMTQSVVPAVSQVIQQNPNRRDDQGRRNNTGPTF 117
Cdd:pfam07234  81 DRRDQEPAVIPHVSQVIPSQPNRRDDQGRRGNAGPMF 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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