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Conserved domains on  [gi|571794733|gb|AHF47714|]
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replication initiation protein [Cardamom bushy dwarf virus]

Protein Classification

Viral_Rep and RNA_helicase domain-containing protein( domain architecture ID 10493342)

Viral_Rep and RNA_helicase domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Viral_Rep pfam02407
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 5-83 5.62e-40

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


:

Pssm-ID: 280553  Cd Length: 82  Bit Score: 134.23  E-value: 5.62e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571794733    5 VVCWMFTINNPSSLP--VMRDEIKYMVYQVERGQEGTRHVQGYVEMKRRSSLKQMRTFFPG-AHLEKRKGTQEEARSYCM 81
Cdd:pfam02407   1 ARCWCFTLNNPTEFLslFSQDELKYFVYQDERGTTGTKHLQGFVEFKNRTSLGQMKKKFPGrAHLEIARGSQEEARDYCM 80


                  ..
gi 571794733   82 KE 83
Cdd:pfam02407  81 KE 82
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 176-268 2.81e-14

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


:

Pssm-ID: 459992  Cd Length: 102  Bit Score: 67.24  E-value: 2.81e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571794733  176 IWVYGPNGgEGKTTYAKHLMK--------TRNAFYTpGGKALDICRLYNYEEIVI-FDIPRCKEeyinyGIIEEFKNGIV 246
Cdd:pfam00910   1 IWLYGPPG-CGKSTLAKYLARallkklglPKDSVYS-RNPDDDFWDGYTGQPVVIiDDFGQNPD-----GPDEAELIRLV 73

                          90       100
                  ....*....|....*....|....*....
gi 571794733  247 QSGKYEPVLKIVEY-------VEVIVMAN 268
Cdd:pfam00910  74 SSTPYPPPMAALEEkgtpftsKFVIVTSN 102
 
Name Accession Description Interval E-value
Viral_Rep pfam02407
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 5-83 5.62e-40

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


Pssm-ID: 280553  Cd Length: 82  Bit Score: 134.23  E-value: 5.62e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571794733    5 VVCWMFTINNPSSLP--VMRDEIKYMVYQVERGQEGTRHVQGYVEMKRRSSLKQMRTFFPG-AHLEKRKGTQEEARSYCM 81
Cdd:pfam02407   1 ARCWCFTLNNPTEFLslFSQDELKYFVYQDERGTTGTKHLQGFVEFKNRTSLGQMKKKFPGrAHLEIARGSQEEARDYCM 80


                  ..
gi 571794733   82 KE 83
Cdd:pfam02407  81 KE 82
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 176-268 2.81e-14

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 67.24  E-value: 2.81e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571794733  176 IWVYGPNGgEGKTTYAKHLMK--------TRNAFYTpGGKALDICRLYNYEEIVI-FDIPRCKEeyinyGIIEEFKNGIV 246
Cdd:pfam00910   1 IWLYGPPG-CGKSTLAKYLARallkklglPKDSVYS-RNPDDDFWDGYTGQPVVIiDDFGQNPD-----GPDEAELIRLV 73

                          90       100
                  ....*....|....*....|....*....
gi 571794733  247 QSGKYEPVLKIVEY-------VEVIVMAN 268
Cdd:pfam00910  74 SSTPYPPPMAALEEkgtpftsKFVIVTSN 102
 
Name Accession Description Interval E-value
Viral_Rep pfam02407
Putative viral replication protein; This is a family of viral ORFs from various plant and ...
 5-83 5.62e-40

Putative viral replication protein; This is a family of viral ORFs from various plant and animal ssDNA circoviruses. Published evidence to support the annotated function "viral replication associated protein" has not be found.


Pssm-ID: 280553  Cd Length: 82  Bit Score: 134.23  E-value: 5.62e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571794733    5 VVCWMFTINNPSSLP--VMRDEIKYMVYQVERGQEGTRHVQGYVEMKRRSSLKQMRTFFPG-AHLEKRKGTQEEARSYCM 81
Cdd:pfam02407   1 ARCWCFTLNNPTEFLslFSQDELKYFVYQDERGTTGTKHLQGFVEFKNRTSLGQMKKKFPGrAHLEIARGSQEEARDYCM 80


                  ..
gi 571794733   82 KE 83
Cdd:pfam02407  81 KE 82
RNA_helicase pfam00910
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ...
 176-268 2.81e-14

RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.


Pssm-ID: 459992  Cd Length: 102  Bit Score: 67.24  E-value: 2.81e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571794733  176 IWVYGPNGgEGKTTYAKHLMK--------TRNAFYTpGGKALDICRLYNYEEIVI-FDIPRCKEeyinyGIIEEFKNGIV 246
Cdd:pfam00910   1 IWLYGPPG-CGKSTLAKYLARallkklglPKDSVYS-RNPDDDFWDGYTGQPVVIiDDFGQNPD-----GPDEAELIRLV 73

                          90       100
                  ....*....|....*....|....*....
gi 571794733  247 QSGKYEPVLKIVEY-------VEVIVMAN 268
Cdd:pfam00910  74 SSTPYPPPMAALEEkgtpftsKFVIVTSN 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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