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Conserved domains on  [gi|571561635|ref|XP_006605121|]
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uncharacterized protein LOC102669901 [Glycine max]

Protein Classification

retropepsin-like aspartic protease( domain architecture ID 10084770)

retropepsin-like (A2 family) peptidase is an aspartic protease that hydrolyzes the peptide bonds of substrates; similar to human retroviral-like aspartic protease 1

CATH:  2.40.70.10
Gene Ontology:  GO:0004190|GO:0006508
MEROPS:  A2
PubMed:  1851433|2194475|7674916

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
retropepsin_like cd00303
Retropepsins; pepsin-like aspartate proteases; The family includes pepsin-like aspartate ...
 26-119 1.02e-17

Retropepsins; pepsin-like aspartate proteases; The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.


:

Pssm-ID: 133136  Cd Length: 92  Bit Score: 73.91  E-value: 1.02e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571561635  26 IPCSIGAMSVRkALIDLGASINLMPLSMCRRIG-ELEIMPTRMTLQLADRSITRPYGVIEDVLVKVQHFTFPTDFVVMDi 104
Cdd:cd00303    1 LKGKINGVPVR-ALVDSGASVNFISESLAKKLGlPPRLLPTPLKVKGANGSSVKTLGVILPVTIGIGGKTFTVDFYVLD- 78

                         90
                 ....*....|....*
gi 571561635 105 eeDAKIPLILGLPFM 119
Cdd:cd00303   79 --LLSYDVILGRPWL 91
 
Name Accession Description Interval E-value
retropepsin_like cd00303
Retropepsins; pepsin-like aspartate proteases; The family includes pepsin-like aspartate ...
 26-119 1.02e-17

Retropepsins; pepsin-like aspartate proteases; The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.


Pssm-ID: 133136  Cd Length: 92  Bit Score: 73.91  E-value: 1.02e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571561635  26 IPCSIGAMSVRkALIDLGASINLMPLSMCRRIG-ELEIMPTRMTLQLADRSITRPYGVIEDVLVKVQHFTFPTDFVVMDi 104
Cdd:cd00303    1 LKGKINGVPVR-ALVDSGASVNFISESLAKKLGlPPRLLPTPLKVKGANGSSVKTLGVILPVTIGIGGKTFTVDFYVLD- 78

                         90
                 ....*....|....*
gi 571561635 105 eeDAKIPLILGLPFM 119
Cdd:cd00303   79 --LLSYDVILGRPWL 91
Asp_protease_2 pfam13650
Aspartyl protease; This family consists of predicted aspartic proteases, typically from 180 to ...
 37-118 2.55e-03

Aspartyl protease; This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix.


Pssm-ID: 433378  Cd Length: 90  Bit Score: 35.72  E-value: 2.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571561635   37 KALIDLGASINLMPLSMCRRIG-ELEIMPTRMTLQLADRSITRPYGVIEDvlVKVQHFTF-PTDFVVMDIEEdaKIPLIL 114
Cdd:pfam13650  11 RFLVDTGASGTVISPSLAERLGlKVRGLAYTVRVSTAGGRVSAARVRLDS--LRLGGLTLeNVPALVLDLGD--LIDGLL 86


                  ....
gi 571561635  115 GLPF 118
Cdd:pfam13650  87 GMDF 90
 
Name Accession Description Interval E-value
retropepsin_like cd00303
Retropepsins; pepsin-like aspartate proteases; The family includes pepsin-like aspartate ...
 26-119 1.02e-17

Retropepsins; pepsin-like aspartate proteases; The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.


Pssm-ID: 133136  Cd Length: 92  Bit Score: 73.91  E-value: 1.02e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571561635  26 IPCSIGAMSVRkALIDLGASINLMPLSMCRRIG-ELEIMPTRMTLQLADRSITRPYGVIEDVLVKVQHFTFPTDFVVMDi 104
Cdd:cd00303    1 LKGKINGVPVR-ALVDSGASVNFISESLAKKLGlPPRLLPTPLKVKGANGSSVKTLGVILPVTIGIGGKTFTVDFYVLD- 78

                         90
                 ....*....|....*
gi 571561635 105 eeDAKIPLILGLPFM 119
Cdd:cd00303   79 --LLSYDVILGRPWL 91
RP_DDI cd05479
RP_DDI; retropepsin-like domain of DNA damage inducible protein; The family represents the ...
 26-127 1.08e-05

RP_DDI; retropepsin-like domain of DNA damage inducible protein; The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.


Pssm-ID: 133146  Cd Length: 124  Bit Score: 42.92  E-value: 1.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571561635  26 IPCSIGAMSVrKALIDLGASINLMPLSMCRRIGELEIMPTRMTLQLADRSITRPYGVIEDVLVKVQHFTFPTDFVVMdie 105
Cdd:cd05479   19 INVEINGVPV-KAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIAKGVGTQKILGRIHLAQVKIGNLFLPCSFTVL--- 94

                         90       100
                 ....*....|....*....|..
gi 571561635 106 EDAKIPLILGLPFMLTANCVVD 127
Cdd:cd05479   95 EDDDVDFLIGLDMLKRHQCVID 116
Asp_protease_2 pfam13650
Aspartyl protease; This family consists of predicted aspartic proteases, typically from 180 to ...
 37-118 2.55e-03

Aspartyl protease; This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix.


Pssm-ID: 433378  Cd Length: 90  Bit Score: 35.72  E-value: 2.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571561635   37 KALIDLGASINLMPLSMCRRIG-ELEIMPTRMTLQLADRSITRPYGVIEDvlVKVQHFTF-PTDFVVMDIEEdaKIPLIL 114
Cdd:pfam13650  11 RFLVDTGASGTVISPSLAERLGlKVRGLAYTVRVSTAGGRVSAARVRLDS--LRLGGLTLeNVPALVLDLGD--LIDGLL 86


                  ....
gi 571561635  115 GLPF 118
Cdd:pfam13650  87 GMDF 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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