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Concise Results
Standard Results
Full Results
DNA-directed RNA polymerase 1B, mitochondrial isoform X1 [Glycine max]
Protein Classification
RPOL_N and RNA_pol domain-containing protein ( domain architecture ID 13418561 )
RPOL_N and RNA_pol domain-containing protein
List of domain hits
Name
Accession
Description
Interval
E-value
RNA_pol
pfam00940 DNA-dependent RNA polymerase; This is a family of single chain RNA polymerases.
568-957
0e+00
DNA-dependent RNA polymerase; This is a family of single chain RNA polymerases.
Pssm-ID: 460006
Cd Length: 411
Bit Score: 677.69
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 568 LG KS GLRWLKIHLANLY ag G V DK L S Y D G R IS F T E NH L D DI F DSA DR PL E G KH WWL Q AEDP F QCLAAC IN L SE ALRSP T PE 647
Cdd:pfam00940 3 LG ER GLRWLKIHLANLY -- G F DK A S L D E R VA F V E DN L E DI L DSA EN PL D G RR WWL K AEDP W QCLAAC FE L AN ALRSP D PE 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 648 TTI SH M PVHQDGSCNGLQHYAALG R D KL GA AA VNLV GG D Q P A DVYSG I A AR V L E IMKR DA E K DPR tnpnal H A RR L ISQV 727
Cdd:pfam00940 81 EYV SH L PVHQDGSCNGLQHYAALG G D EE GA KQ VNLV PS D R P Q DVYSG V A EL V E E KIEK DA A K GNE ------ I A KL L KGKI 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 728 D RK L VKQTVMT S VYGVT Y IGAR D QI KRR LKE RCAIEDDVE L FA AS C Y A AK TTLTALE E M F EA A RS I MG WLG D CAK V IA AT 807
Cdd:pfam00940 155 T RK V VKQTVMT N VYGVT F IGAR E QI EKQ LKE IGDFPGEED L YK AS S Y L AK KIFDSIG E L F TG A HE I QD WLG E CAK R IA KS 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 808 ------ NQA V R W I TPLGLPVVQPYR QFGRHLI KT S LQ ILTLQR -- E T NK V MVKR Q RT AFPPNF V HSLD GS HMM M TA V AC K 879
Cdd:pfam00940 235 vppeqs MSP V I W T TPLGLPVVQPYR KSKKKQV KT N LQ SVSISD pn D T DP V DKRK Q LQ AFPPNF I HSLD AT HMM L TA L AC D 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 880 K AGL N FA G VHDS Y WTHACDVDEMN R ILRE K FV E L YDAP ILE N L L E S F QKTFP ------------------- A L N FP PL P E 940
Cdd:pfam00940 315 E AGL T FA A VHDS F WTHACDVDEMN K ILRE Q FV K L HSED ILE R L R E E F KERYK gslqlakipkdspltpvwl P L T FP EV P K 394
410
....*....|....*..
gi 571526978 941 R GDFDL QE VL G S A YFF N 957
Cdd:pfam00940 395 K GDFDL NR VL D S K YFF S 411
PHA00452 super family
cl42978 T3/T7-like RNA polymerase
114-956
0e+00
T3/T7-like RNA polymerase
PHA00452 :Pssm-ID: 222797 [Multi-domain]
Cd Length: 807
Bit Score: 561.95
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 114 L KRR Q IES E T EA WA E AAREYGEL LE DMRDKKL A PNL P YMKS L FLGWFE P LRN AI L A DQDLC K DSKCRMSHAPYFNDLPAD 193
Cdd:PHA00452 5 L AAE Q LQL E E EA YG E GEERFRKA LE RQLEAGE A DDN P VARR L LATLLP P VAE AI D A WKEEY K KRGRAAKARGLLRLVDPE 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 194 MM AV V T MHKLMAL L MTNANG vg TA RVI qa A CQ IG E A V E N E A R IYQF mk REKEN K SSH lapveqsg K LT E ENGEMEQKQSR 273
Cdd:PHA00452 85 VL AV I T LKVTLDM L LSKETP -- TA QAV -- A TA IG R A I E D E I R FGRI -- EDLNP K YFK -------- K VV E YLKRSRTGSVY 150
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 274 LRKRVAGLMKKQKK L Q amgiigrqd D W KT W GQ E AQVK VG SR L MQL LIE TAYI ---- QPPTNQI G DGPPDIHPA -- FRHT L 347
Cdd:PHA00452 151 HIAFMMVVEADMVL L G --------- E W DP W PK E DYIH VG KW L LEA LIE STGL velv RHTGGNG G KDHEYLELS ee AVEL L 221
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 348 rtlsnesqr ETRRYGVIECD P L vqngleksarhmvip Y M PM L VPP IN WT GYDK G A Y L --- FL P SYVMRVHG akqq RE A VK 424
Cdd:PHA00452 222 --------- QDIAAAAAGIS P M --------------- Y Q PM V VPP KP WT SIVG G G Y H teg RR P LAPLVRKT ---- KK A LR 273
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 425 R APKS Q LDP V FE A L N T L G NT K WR V NK R VL C V IDQIWAN G g RLA D LVDRENV P S P KE P DTI DE A E IRKWK -- WKVK A VKKE 502
Cdd:PHA00452 274 R YRQK Q MPE V YK A V N A L Q NT A WR I NK D VL A V VNEVVNW G - PVG D VLGIPRR P L P PK P EFL DE N E EAFKA wk RAAA A WYTK 352
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 503 NS ER H S Q R CDI E LK L A VA R K MK D EE A F Y Y P H N L D F RGR A Y PM h PY LN HL GSDL CRGI L E FAEG RS LGK S GL R WLK I H L AN 582
Cdd:PHA00452 353 EK ER V S K R RRL E FM L R VA N K FA D YK A I Y F P Y N M D W RGR V Y AV - SM LN PQ GSDL QKAL L R FAEG KP LGK R GL Y WLK V H G AN 431
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 583 L Y ag GVDK LSY D G R ISFTENHL D D I FDS A DR PL EGK h WW LQ A ED P FQC LAAC INLSE A LR S P T pe TTI S HM PV HQ DG S C N 662
Cdd:PHA00452 432 C Y -- GVDK VTF D E R AAWVDENH D N I LAA A ED PL NNT - WW AE A DS P LCF LAAC FEYAA A VH S G T -- SYV S GL PV AM DG T C S 506
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 663 GLQH YA A LG RD KL G AA AVNL VGG D Q P A D V Y SGI A AR V L E IMK RDA e KDPRT N PN AL HARR L ISQVD R K L V K QT VMT SV YG 742
Cdd:PHA00452 507 GLQH FS A ML RD EV G GR AVNL LPS D K P Q D I Y GIV A EV V N E KLE RDA - INGTD N TR AL ARLW L AYGIT R S L T K RP VMT LP YG 585
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 743 V T YIGA RD Q I KRR L KERCAI E D D -- VELFA A SC Y A AK TTLT A LE E MFE AA RSI M G WL GDC AK - VI A ATNQ A VR W I TP L G L 819
Cdd:PHA00452 586 S T RFSC RD Y I LED L LQPGID E G D ga MFTNQ A AS Y M AK LIWD A IS E TVP AA VEA M N WL QQA AK l LA A KGAE A LH W T TP T G F 665
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 820 PV V Q P YR QFGRHLIKTS L ---- QI l T L QRE T NKVMVKRQRTAFP PNFVHSLD G SH MMM T A VAC KKA G L - N FA GV HDS YW T 894
Cdd:PHA00452 666 PV W Q E YR KPEEKRVRLR L mgva RV - Q L YVN T DTIDARKHASGIA PNFVHSLD A SH LRL T V VAC AEK G I e S FA VI HDS FG T 744
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 571526978 895 HA C D V D EMN R IL RE K FVE L Y DAP ile NL L ES F QKT F P --- A L NF P P LPE R G DF DL Q EVL G S AY FF 956
Cdd:PHA00452 745 HA A D A D NLH R AI RE T FVE M Y EEN --- DV L AD F ADQ F G dql Q L KM P E LPE K G SL DL E EVL D S DF FF 806
Name
Accession
Description
Interval
E-value
RNA_pol
pfam00940 DNA-dependent RNA polymerase; This is a family of single chain RNA polymerases.
568-957
0e+00
DNA-dependent RNA polymerase; This is a family of single chain RNA polymerases.
Pssm-ID: 460006
Cd Length: 411
Bit Score: 677.69
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 568 LG KS GLRWLKIHLANLY ag G V DK L S Y D G R IS F T E NH L D DI F DSA DR PL E G KH WWL Q AEDP F QCLAAC IN L SE ALRSP T PE 647
Cdd:pfam00940 3 LG ER GLRWLKIHLANLY -- G F DK A S L D E R VA F V E DN L E DI L DSA EN PL D G RR WWL K AEDP W QCLAAC FE L AN ALRSP D PE 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 648 TTI SH M PVHQDGSCNGLQHYAALG R D KL GA AA VNLV GG D Q P A DVYSG I A AR V L E IMKR DA E K DPR tnpnal H A RR L ISQV 727
Cdd:pfam00940 81 EYV SH L PVHQDGSCNGLQHYAALG G D EE GA KQ VNLV PS D R P Q DVYSG V A EL V E E KIEK DA A K GNE ------ I A KL L KGKI 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 728 D RK L VKQTVMT S VYGVT Y IGAR D QI KRR LKE RCAIEDDVE L FA AS C Y A AK TTLTALE E M F EA A RS I MG WLG D CAK V IA AT 807
Cdd:pfam00940 155 T RK V VKQTVMT N VYGVT F IGAR E QI EKQ LKE IGDFPGEED L YK AS S Y L AK KIFDSIG E L F TG A HE I QD WLG E CAK R IA KS 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 808 ------ NQA V R W I TPLGLPVVQPYR QFGRHLI KT S LQ ILTLQR -- E T NK V MVKR Q RT AFPPNF V HSLD GS HMM M TA V AC K 879
Cdd:pfam00940 235 vppeqs MSP V I W T TPLGLPVVQPYR KSKKKQV KT N LQ SVSISD pn D T DP V DKRK Q LQ AFPPNF I HSLD AT HMM L TA L AC D 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 880 K AGL N FA G VHDS Y WTHACDVDEMN R ILRE K FV E L YDAP ILE N L L E S F QKTFP ------------------- A L N FP PL P E 940
Cdd:pfam00940 315 E AGL T FA A VHDS F WTHACDVDEMN K ILRE Q FV K L HSED ILE R L R E E F KERYK gslqlakipkdspltpvwl P L T FP EV P K 394
410
....*....|....*..
gi 571526978 941 R GDFDL QE VL G S A YFF N 957
Cdd:pfam00940 395 K GDFDL NR VL D S K YFF S 411
PHA00452
PHA00452 T3/T7-like RNA polymerase
114-956
0e+00
T3/T7-like RNA polymerase
Pssm-ID: 222797 [Multi-domain]
Cd Length: 807
Bit Score: 561.95
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 114 L KRR Q IES E T EA WA E AAREYGEL LE DMRDKKL A PNL P YMKS L FLGWFE P LRN AI L A DQDLC K DSKCRMSHAPYFNDLPAD 193
Cdd:PHA00452 5 L AAE Q LQL E E EA YG E GEERFRKA LE RQLEAGE A DDN P VARR L LATLLP P VAE AI D A WKEEY K KRGRAAKARGLLRLVDPE 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 194 MM AV V T MHKLMAL L MTNANG vg TA RVI qa A CQ IG E A V E N E A R IYQF mk REKEN K SSH lapveqsg K LT E ENGEMEQKQSR 273
Cdd:PHA00452 85 VL AV I T LKVTLDM L LSKETP -- TA QAV -- A TA IG R A I E D E I R FGRI -- EDLNP K YFK -------- K VV E YLKRSRTGSVY 150
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 274 LRKRVAGLMKKQKK L Q amgiigrqd D W KT W GQ E AQVK VG SR L MQL LIE TAYI ---- QPPTNQI G DGPPDIHPA -- FRHT L 347
Cdd:PHA00452 151 HIAFMMVVEADMVL L G --------- E W DP W PK E DYIH VG KW L LEA LIE STGL velv RHTGGNG G KDHEYLELS ee AVEL L 221
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 348 rtlsnesqr ETRRYGVIECD P L vqngleksarhmvip Y M PM L VPP IN WT GYDK G A Y L --- FL P SYVMRVHG akqq RE A VK 424
Cdd:PHA00452 222 --------- QDIAAAAAGIS P M --------------- Y Q PM V VPP KP WT SIVG G G Y H teg RR P LAPLVRKT ---- KK A LR 273
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 425 R APKS Q LDP V FE A L N T L G NT K WR V NK R VL C V IDQIWAN G g RLA D LVDRENV P S P KE P DTI DE A E IRKWK -- WKVK A VKKE 502
Cdd:PHA00452 274 R YRQK Q MPE V YK A V N A L Q NT A WR I NK D VL A V VNEVVNW G - PVG D VLGIPRR P L P PK P EFL DE N E EAFKA wk RAAA A WYTK 352
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 503 NS ER H S Q R CDI E LK L A VA R K MK D EE A F Y Y P H N L D F RGR A Y PM h PY LN HL GSDL CRGI L E FAEG RS LGK S GL R WLK I H L AN 582
Cdd:PHA00452 353 EK ER V S K R RRL E FM L R VA N K FA D YK A I Y F P Y N M D W RGR V Y AV - SM LN PQ GSDL QKAL L R FAEG KP LGK R GL Y WLK V H G AN 431
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 583 L Y ag GVDK LSY D G R ISFTENHL D D I FDS A DR PL EGK h WW LQ A ED P FQC LAAC INLSE A LR S P T pe TTI S HM PV HQ DG S C N 662
Cdd:PHA00452 432 C Y -- GVDK VTF D E R AAWVDENH D N I LAA A ED PL NNT - WW AE A DS P LCF LAAC FEYAA A VH S G T -- SYV S GL PV AM DG T C S 506
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 663 GLQH YA A LG RD KL G AA AVNL VGG D Q P A D V Y SGI A AR V L E IMK RDA e KDPRT N PN AL HARR L ISQVD R K L V K QT VMT SV YG 742
Cdd:PHA00452 507 GLQH FS A ML RD EV G GR AVNL LPS D K P Q D I Y GIV A EV V N E KLE RDA - INGTD N TR AL ARLW L AYGIT R S L T K RP VMT LP YG 585
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 743 V T YIGA RD Q I KRR L KERCAI E D D -- VELFA A SC Y A AK TTLT A LE E MFE AA RSI M G WL GDC AK - VI A ATNQ A VR W I TP L G L 819
Cdd:PHA00452 586 S T RFSC RD Y I LED L LQPGID E G D ga MFTNQ A AS Y M AK LIWD A IS E TVP AA VEA M N WL QQA AK l LA A KGAE A LH W T TP T G F 665
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 820 PV V Q P YR QFGRHLIKTS L ---- QI l T L QRE T NKVMVKRQRTAFP PNFVHSLD G SH MMM T A VAC KKA G L - N FA GV HDS YW T 894
Cdd:PHA00452 666 PV W Q E YR KPEEKRVRLR L mgva RV - Q L YVN T DTIDARKHASGIA PNFVHSLD A SH LRL T V VAC AEK G I e S FA VI HDS FG T 744
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 571526978 895 HA C D V D EMN R IL RE K FVE L Y DAP ile NL L ES F QKT F P --- A L NF P P LPE R G DF DL Q EVL G S AY FF 956
Cdd:PHA00452 745 HA A D A D NLH R AI RE T FVE M Y EEN --- DV L AD F ADQ F G dql Q L KM P E LPE K G SL DL E EVL D S DF FF 806
RPO41
COG5108 Mitochondrial DNA-directed RNA polymerase [Transcription];
117-956
9.57e-147
Mitochondrial DNA-directed RNA polymerase [Transcription];
Pssm-ID: 444054 [Multi-domain]
Cd Length: 826
Bit Score: 456.30
E-value: 9.57e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 117 RQI ES E T E A w AEA A R EYG - E LL E DM R DKKLAPNLP Y MKSLFLGWF E P L RN AI L A -- D QDLCKDSKCRMSHAP Y FND L P A D 193
Cdd:COG5108 13 RQI AL E E E M - AEA G R SRF v E RI E KA R KRGEESGTQ Y GRRIISDAV E L L AE AI E A ti D ESSSGGAGNWHTAYA Y LRE L D A E 91
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 194 MM A VVTMHKLM allmtna NG V GTARVI QA - A CQ I GEA VE N E A R IYQFMKRE K ENKS shlapveqsg KLTEENGEMEQKQS 272
Cdd:COG5108 92 VL A YLALRQCL ------- DA V TQRHTL QA v A IR I ASM VE D E V R GEAIREAF K DFYP ---------- RGKKKIESRTSRAV 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 273 R LRKRVAGLM K kqkklqamgii GRQDDWKT W GQEAQVK VG SR L MQ L LI E TA --- Y I QPP T NQ I G D G P P dihp AF R H T LR T 349
Cdd:COG5108 155 R YKDDFERRV K ----------- NAVAKEED W PVSDKIH VG FK L IE L VV E ST glv E I ARD T EG I N D T P V ---- FV R P T ET T 219
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 350 L SNESQRET R rygviecdplvqngleks ARHMVIP Y M PM L VPP I NWT GYDK G A YL fl PSY V M R VHGA K QQREAVKRAP K S 429
Cdd:COG5108 220 L EWIAEANL R ------------------ MAMLSPA Y L PM V VPP R NWT TPFR G G YL -- SGE V R R LPLV K TRNRKYLEEL K N 279
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 430 - QLDP V FE A L N T L GN T K W RV N KR VL C V IDQI W ANGGR L ---- ADLVDRENV P SPK E PD T IDEAEIRK WK WKVKAVKKE N S 504
Cdd:COG5108 280 g DMPE V YA A V N A L QQ T P W TI N RY VL A V MKWL W ERDLD L glpq REPITPPIK P ENR E DI T TNQVARKR WK KAARKIYIA N A 359
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 505 ERH S Q R CDIELK L AV A RKMK D EEA FY Y P HN LDFRGR A Y PMHPY LN HL G S D LCR G I L E FA E G RSL G KS G LR WL K IH L AN LY 584
Cdd:COG5108 360 KLC S K R VQFRRD L NE A ERFS D YRE FY F P YQ LDFRGR V Y AVPAF LN PQ G Q D HAK G L L M FA D G KPI G DG G AK WL A IH G AN VW 439
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 585 ag G V DK L S YDG R ISFT E NHLDD I FDS A - D RPL E G khw W LQ A ED P F Q C LA A C INLSEALRSP tp E TTI S HM P VHQ DGSC N G 663
Cdd:COG5108 440 -- G Y DK A S LEE R VKWV E DNYEA I LAA A a D YVA E F --- W SK A DK P W Q F LA F C REWYGYDQHG -- E GYV S GL P IAM DGSC S G 512
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 664 LQHY A A LG RD KL G A AAVNLV GG D Q P A D V Y SGI A ARVLEIMK R DAEK D PR T NPNA L HA ------ RR L ISQVD RK LV K QT VM 737
Cdd:COG5108 513 LQHY S A ML RD EV G G AAVNLV PS D K P Q D I Y AFV A EVDINLAQ R IGCP D EL T TNEI L NG imdmah NW L AFGIT RK VT K RN VM 592
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 738 T SV YG V T YI G A RDQ IKRRLKE R CAI E DDVEL ------ F A A SCYA AK TTLT A LE E MFE AAR SI M G WL G D C A KVI A ATNQA V 811
Cdd:COG5108 593 T LP YG S T EY G F RDQ VREDMIT R KKE E EGEPF pfggdg F S A AMWL AK LIWD A IG E VVV AAR RG M D WL Q D L A GIA A KEGLP V 672
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 812 R W I TPLG L PV V Q P YR QFGRHL I K T SLQ ---- I LTL QR E TNKVMVKR Q RTAFP PNFVHS L D GS H M MMT AVACKKA G L - N FA 886
Cdd:COG5108 673 I W T TPLG F PV M Q D YR SSKARR I N T TTR kvrv R LTL RE E QDTIDKRK Q KQGIA PNFVHS M D AT H L MMT VNRSNEY G A s S FA 752
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 571526978 887 G VHDS YW T H A CDVDE M NRI LR EK F V ELY DA pil ENL LE S F QKTF ------ P A LNF P PL P ER G DF D LQE VL G S AY FF 956
Cdd:COG5108 753 L VHDS FG T D A GSAEL M LDC LR KA F I ELY EE --- SDV LE D F KSEI admlsd D A YAL P EV P KK G SL D VSA VL E S DF FF 825
RPOL_N
pfam14700 DNA-directed RNA polymerase N-terminal; This is the N-terminal domain of DNA-directed RNA ...
117-443
1.79e-92
DNA-directed RNA polymerase N-terminal; This is the N-terminal domain of DNA-directed RNA polymerase. This domain has a role in interaction with regions of upstream promoter DNA and the nascent RNA chain, leading to the processivity of the enzyme. In order to make mRNA transcripts the RNA polymerase undergoes a transition from the initiation phase (which only makes short fragments of RNA) to an elongation phase. This domain undergoes a structural change in the transition from initiation to elongation phase. The structural change results in abolition of the promoter binding site, creation of a channel accommodating the heteroduplex in the active site and formation of an exit tunnel which the RNA transcript passes through after peeling off the heteroduplex.
Pssm-ID: 464270
Cd Length: 286
Bit Score: 294.90
E-value: 1.79e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 117 RQ IES E TEAWAE A AREYG E LL E DMRDKK L AP NLP - YMKS L FLG W F E P L RN AI LADQD L C K DS --------- K C R MSHA PY 186
Cdd:pfam14700 1 RQ LRL E RDSVEA A VERWR E EF E ELQKRG L NT NLP k SLNA L LWQ W Y E A L LP AI KEEIE L L K AA eakpkktkd K E R CEYG PY 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 187 FND LP ADMM A VV T MHK L MA LL M T NANGV G t AR V IQA A CQ IG E AVE N E A R IY Q FM K R EK ENKSSHLA P veqsgklteenge 266
Cdd:pfam14700 81 LRL LP PEKL A AI T ILE L LS LL S T GGVDK G - MK V SRL A IS IG K AVE D E Y R AQ Q LL K K EK KKIKKKKI P ------------- 146
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 267 meqkqsrlrkrvaglmkkqkklqamgiigrqddwkt W G QE AQV KVG SR L MQ LLIETA YIQPPTNQIGD G PPD I H -- PAF R 344
Cdd:pfam14700 147 ------------------------------------ W P QE VRA KVG AV L LS LLIETA KVPVTAEDPET G EKV I Q pq PAF Y 190
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 345 H T lrtlsn ESQRETRRY GVI ECD P LVQNG L - EKS AR HMVI P - YM PMLVPP IN WT G Y D KG A YL FL PS YV MR VHGAKQ QR EA 422
Cdd:pfam14700 191 H S ------ YQYKRGKKV GVI KPH P ELVKL L l REP AR DTLT P r HL PMLVPP KP WT S Y N KG G YL LS PS KL MR TKDGDE QR AY 264
330 340
....*....|....*....|..
gi 571526978 423 V K R A PKS - Q LD P VF EA L NT LGN 443
Cdd:pfam14700 265 L K A A SER g D LD Q VF DG L DV LGN 286
Name
Accession
Description
Interval
E-value
RNA_pol
pfam00940 DNA-dependent RNA polymerase; This is a family of single chain RNA polymerases.
568-957
0e+00
DNA-dependent RNA polymerase; This is a family of single chain RNA polymerases.
Pssm-ID: 460006
Cd Length: 411
Bit Score: 677.69
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 568 LG KS GLRWLKIHLANLY ag G V DK L S Y D G R IS F T E NH L D DI F DSA DR PL E G KH WWL Q AEDP F QCLAAC IN L SE ALRSP T PE 647
Cdd:pfam00940 3 LG ER GLRWLKIHLANLY -- G F DK A S L D E R VA F V E DN L E DI L DSA EN PL D G RR WWL K AEDP W QCLAAC FE L AN ALRSP D PE 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 648 TTI SH M PVHQDGSCNGLQHYAALG R D KL GA AA VNLV GG D Q P A DVYSG I A AR V L E IMKR DA E K DPR tnpnal H A RR L ISQV 727
Cdd:pfam00940 81 EYV SH L PVHQDGSCNGLQHYAALG G D EE GA KQ VNLV PS D R P Q DVYSG V A EL V E E KIEK DA A K GNE ------ I A KL L KGKI 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 728 D RK L VKQTVMT S VYGVT Y IGAR D QI KRR LKE RCAIEDDVE L FA AS C Y A AK TTLTALE E M F EA A RS I MG WLG D CAK V IA AT 807
Cdd:pfam00940 155 T RK V VKQTVMT N VYGVT F IGAR E QI EKQ LKE IGDFPGEED L YK AS S Y L AK KIFDSIG E L F TG A HE I QD WLG E CAK R IA KS 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 808 ------ NQA V R W I TPLGLPVVQPYR QFGRHLI KT S LQ ILTLQR -- E T NK V MVKR Q RT AFPPNF V HSLD GS HMM M TA V AC K 879
Cdd:pfam00940 235 vppeqs MSP V I W T TPLGLPVVQPYR KSKKKQV KT N LQ SVSISD pn D T DP V DKRK Q LQ AFPPNF I HSLD AT HMM L TA L AC D 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 880 K AGL N FA G VHDS Y WTHACDVDEMN R ILRE K FV E L YDAP ILE N L L E S F QKTFP ------------------- A L N FP PL P E 940
Cdd:pfam00940 315 E AGL T FA A VHDS F WTHACDVDEMN K ILRE Q FV K L HSED ILE R L R E E F KERYK gslqlakipkdspltpvwl P L T FP EV P K 394
410
....*....|....*..
gi 571526978 941 R GDFDL QE VL G S A YFF N 957
Cdd:pfam00940 395 K GDFDL NR VL D S K YFF S 411
PHA00452
PHA00452 T3/T7-like RNA polymerase
114-956
0e+00
T3/T7-like RNA polymerase
Pssm-ID: 222797 [Multi-domain]
Cd Length: 807
Bit Score: 561.95
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 114 L KRR Q IES E T EA WA E AAREYGEL LE DMRDKKL A PNL P YMKS L FLGWFE P LRN AI L A DQDLC K DSKCRMSHAPYFNDLPAD 193
Cdd:PHA00452 5 L AAE Q LQL E E EA YG E GEERFRKA LE RQLEAGE A DDN P VARR L LATLLP P VAE AI D A WKEEY K KRGRAAKARGLLRLVDPE 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 194 MM AV V T MHKLMAL L MTNANG vg TA RVI qa A CQ IG E A V E N E A R IYQF mk REKEN K SSH lapveqsg K LT E ENGEMEQKQSR 273
Cdd:PHA00452 85 VL AV I T LKVTLDM L LSKETP -- TA QAV -- A TA IG R A I E D E I R FGRI -- EDLNP K YFK -------- K VV E YLKRSRTGSVY 150
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 274 LRKRVAGLMKKQKK L Q amgiigrqd D W KT W GQ E AQVK VG SR L MQL LIE TAYI ---- QPPTNQI G DGPPDIHPA -- FRHT L 347
Cdd:PHA00452 151 HIAFMMVVEADMVL L G --------- E W DP W PK E DYIH VG KW L LEA LIE STGL velv RHTGGNG G KDHEYLELS ee AVEL L 221
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 348 rtlsnesqr ETRRYGVIECD P L vqngleksarhmvip Y M PM L VPP IN WT GYDK G A Y L --- FL P SYVMRVHG akqq RE A VK 424
Cdd:PHA00452 222 --------- QDIAAAAAGIS P M --------------- Y Q PM V VPP KP WT SIVG G G Y H teg RR P LAPLVRKT ---- KK A LR 273
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 425 R APKS Q LDP V FE A L N T L G NT K WR V NK R VL C V IDQIWAN G g RLA D LVDRENV P S P KE P DTI DE A E IRKWK -- WKVK A VKKE 502
Cdd:PHA00452 274 R YRQK Q MPE V YK A V N A L Q NT A WR I NK D VL A V VNEVVNW G - PVG D VLGIPRR P L P PK P EFL DE N E EAFKA wk RAAA A WYTK 352
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 503 NS ER H S Q R CDI E LK L A VA R K MK D EE A F Y Y P H N L D F RGR A Y PM h PY LN HL GSDL CRGI L E FAEG RS LGK S GL R WLK I H L AN 582
Cdd:PHA00452 353 EK ER V S K R RRL E FM L R VA N K FA D YK A I Y F P Y N M D W RGR V Y AV - SM LN PQ GSDL QKAL L R FAEG KP LGK R GL Y WLK V H G AN 431
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 583 L Y ag GVDK LSY D G R ISFTENHL D D I FDS A DR PL EGK h WW LQ A ED P FQC LAAC INLSE A LR S P T pe TTI S HM PV HQ DG S C N 662
Cdd:PHA00452 432 C Y -- GVDK VTF D E R AAWVDENH D N I LAA A ED PL NNT - WW AE A DS P LCF LAAC FEYAA A VH S G T -- SYV S GL PV AM DG T C S 506
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 663 GLQH YA A LG RD KL G AA AVNL VGG D Q P A D V Y SGI A AR V L E IMK RDA e KDPRT N PN AL HARR L ISQVD R K L V K QT VMT SV YG 742
Cdd:PHA00452 507 GLQH FS A ML RD EV G GR AVNL LPS D K P Q D I Y GIV A EV V N E KLE RDA - INGTD N TR AL ARLW L AYGIT R S L T K RP VMT LP YG 585
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 743 V T YIGA RD Q I KRR L KERCAI E D D -- VELFA A SC Y A AK TTLT A LE E MFE AA RSI M G WL GDC AK - VI A ATNQ A VR W I TP L G L 819
Cdd:PHA00452 586 S T RFSC RD Y I LED L LQPGID E G D ga MFTNQ A AS Y M AK LIWD A IS E TVP AA VEA M N WL QQA AK l LA A KGAE A LH W T TP T G F 665
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 820 PV V Q P YR QFGRHLIKTS L ---- QI l T L QRE T NKVMVKRQRTAFP PNFVHSLD G SH MMM T A VAC KKA G L - N FA GV HDS YW T 894
Cdd:PHA00452 666 PV W Q E YR KPEEKRVRLR L mgva RV - Q L YVN T DTIDARKHASGIA PNFVHSLD A SH LRL T V VAC AEK G I e S FA VI HDS FG T 744
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 571526978 895 HA C D V D EMN R IL RE K FVE L Y DAP ile NL L ES F QKT F P --- A L NF P P LPE R G DF DL Q EVL G S AY FF 956
Cdd:PHA00452 745 HA A D A D NLH R AI RE T FVE M Y EEN --- DV L AD F ADQ F G dql Q L KM P E LPE K G SL DL E EVL D S DF FF 806
RPO41
COG5108 Mitochondrial DNA-directed RNA polymerase [Transcription];
117-956
9.57e-147
Mitochondrial DNA-directed RNA polymerase [Transcription];
Pssm-ID: 444054 [Multi-domain]
Cd Length: 826
Bit Score: 456.30
E-value: 9.57e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 117 RQI ES E T E A w AEA A R EYG - E LL E DM R DKKLAPNLP Y MKSLFLGWF E P L RN AI L A -- D QDLCKDSKCRMSHAP Y FND L P A D 193
Cdd:COG5108 13 RQI AL E E E M - AEA G R SRF v E RI E KA R KRGEESGTQ Y GRRIISDAV E L L AE AI E A ti D ESSSGGAGNWHTAYA Y LRE L D A E 91
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 194 MM A VVTMHKLM allmtna NG V GTARVI QA - A CQ I GEA VE N E A R IYQFMKRE K ENKS shlapveqsg KLTEENGEMEQKQS 272
Cdd:COG5108 92 VL A YLALRQCL ------- DA V TQRHTL QA v A IR I ASM VE D E V R GEAIREAF K DFYP ---------- RGKKKIESRTSRAV 154
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 273 R LRKRVAGLM K kqkklqamgii GRQDDWKT W GQEAQVK VG SR L MQ L LI E TA --- Y I QPP T NQ I G D G P P dihp AF R H T LR T 349
Cdd:COG5108 155 R YKDDFERRV K ----------- NAVAKEED W PVSDKIH VG FK L IE L VV E ST glv E I ARD T EG I N D T P V ---- FV R P T ET T 219
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 350 L SNESQRET R rygviecdplvqngleks ARHMVIP Y M PM L VPP I NWT GYDK G A YL fl PSY V M R VHGA K QQREAVKRAP K S 429
Cdd:COG5108 220 L EWIAEANL R ------------------ MAMLSPA Y L PM V VPP R NWT TPFR G G YL -- SGE V R R LPLV K TRNRKYLEEL K N 279
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 430 - QLDP V FE A L N T L GN T K W RV N KR VL C V IDQI W ANGGR L ---- ADLVDRENV P SPK E PD T IDEAEIRK WK WKVKAVKKE N S 504
Cdd:COG5108 280 g DMPE V YA A V N A L QQ T P W TI N RY VL A V MKWL W ERDLD L glpq REPITPPIK P ENR E DI T TNQVARKR WK KAARKIYIA N A 359
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 505 ERH S Q R CDIELK L AV A RKMK D EEA FY Y P HN LDFRGR A Y PMHPY LN HL G S D LCR G I L E FA E G RSL G KS G LR WL K IH L AN LY 584
Cdd:COG5108 360 KLC S K R VQFRRD L NE A ERFS D YRE FY F P YQ LDFRGR V Y AVPAF LN PQ G Q D HAK G L L M FA D G KPI G DG G AK WL A IH G AN VW 439
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 585 ag G V DK L S YDG R ISFT E NHLDD I FDS A - D RPL E G khw W LQ A ED P F Q C LA A C INLSEALRSP tp E TTI S HM P VHQ DGSC N G 663
Cdd:COG5108 440 -- G Y DK A S LEE R VKWV E DNYEA I LAA A a D YVA E F --- W SK A DK P W Q F LA F C REWYGYDQHG -- E GYV S GL P IAM DGSC S G 512
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 664 LQHY A A LG RD KL G A AAVNLV GG D Q P A D V Y SGI A ARVLEIMK R DAEK D PR T NPNA L HA ------ RR L ISQVD RK LV K QT VM 737
Cdd:COG5108 513 LQHY S A ML RD EV G G AAVNLV PS D K P Q D I Y AFV A EVDINLAQ R IGCP D EL T TNEI L NG imdmah NW L AFGIT RK VT K RN VM 592
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 738 T SV YG V T YI G A RDQ IKRRLKE R CAI E DDVEL ------ F A A SCYA AK TTLT A LE E MFE AAR SI M G WL G D C A KVI A ATNQA V 811
Cdd:COG5108 593 T LP YG S T EY G F RDQ VREDMIT R KKE E EGEPF pfggdg F S A AMWL AK LIWD A IG E VVV AAR RG M D WL Q D L A GIA A KEGLP V 672
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 812 R W I TPLG L PV V Q P YR QFGRHL I K T SLQ ---- I LTL QR E TNKVMVKR Q RTAFP PNFVHS L D GS H M MMT AVACKKA G L - N FA 886
Cdd:COG5108 673 I W T TPLG F PV M Q D YR SSKARR I N T TTR kvrv R LTL RE E QDTIDKRK Q KQGIA PNFVHS M D AT H L MMT VNRSNEY G A s S FA 752
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 571526978 887 G VHDS YW T H A CDVDE M NRI LR EK F V ELY DA pil ENL LE S F QKTF ------ P A LNF P PL P ER G DF D LQE VL G S AY FF 956
Cdd:COG5108 753 L VHDS FG T D A GSAEL M LDC LR KA F I ELY EE --- SDV LE D F KSEI admlsd D A YAL P EV P KK G SL D VSA VL E S DF FF 825
RPOL_N
pfam14700 DNA-directed RNA polymerase N-terminal; This is the N-terminal domain of DNA-directed RNA ...
117-443
1.79e-92
DNA-directed RNA polymerase N-terminal; This is the N-terminal domain of DNA-directed RNA polymerase. This domain has a role in interaction with regions of upstream promoter DNA and the nascent RNA chain, leading to the processivity of the enzyme. In order to make mRNA transcripts the RNA polymerase undergoes a transition from the initiation phase (which only makes short fragments of RNA) to an elongation phase. This domain undergoes a structural change in the transition from initiation to elongation phase. The structural change results in abolition of the promoter binding site, creation of a channel accommodating the heteroduplex in the active site and formation of an exit tunnel which the RNA transcript passes through after peeling off the heteroduplex.
Pssm-ID: 464270
Cd Length: 286
Bit Score: 294.90
E-value: 1.79e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 117 RQ IES E TEAWAE A AREYG E LL E DMRDKK L AP NLP - YMKS L FLG W F E P L RN AI LADQD L C K DS --------- K C R MSHA PY 186
Cdd:pfam14700 1 RQ LRL E RDSVEA A VERWR E EF E ELQKRG L NT NLP k SLNA L LWQ W Y E A L LP AI KEEIE L L K AA eakpkktkd K E R CEYG PY 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 187 FND LP ADMM A VV T MHK L MA LL M T NANGV G t AR V IQA A CQ IG E AVE N E A R IY Q FM K R EK ENKSSHLA P veqsgklteenge 266
Cdd:pfam14700 81 LRL LP PEKL A AI T ILE L LS LL S T GGVDK G - MK V SRL A IS IG K AVE D E Y R AQ Q LL K K EK KKIKKKKI P ------------- 146
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 267 meqkqsrlrkrvaglmkkqkklqamgiigrqddwkt W G QE AQV KVG SR L MQ LLIETA YIQPPTNQIGD G PPD I H -- PAF R 344
Cdd:pfam14700 147 ------------------------------------ W P QE VRA KVG AV L LS LLIETA KVPVTAEDPET G EKV I Q pq PAF Y 190
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571526978 345 H T lrtlsn ESQRETRRY GVI ECD P LVQNG L - EKS AR HMVI P - YM PMLVPP IN WT G Y D KG A YL FL PS YV MR VHGAKQ QR EA 422
Cdd:pfam14700 191 H S ------ YQYKRGKKV GVI KPH P ELVKL L l REP AR DTLT P r HL PMLVPP KP WT S Y N KG G YL LS PS KL MR TKDGDE QR AY 264
330 340
....*....|....*....|..
gi 571526978 423 V K R A PKS - Q LD P VF EA L NT LGN 443
Cdd:pfam14700 265 L K A A SER g D LD Q VF DG L DV LGN 286
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
