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Conserved domains on  [gi|571514958|ref|XP_006597183|]
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putative FBD-associated F-box protein At5g22720 isoform X2 [Glycine max]

Protein Classification

F-box protein( domain architecture ID 17779409)

F-box protein functions as the substrate-recognition component of an SCF (Skp1-Cullin-F-box protein) ubiquitin-protein ligase that is involved in ubiquitin-dependent degradation

CATH:  1.20.1280.50
Gene Ontology:  GO:0019005|GO:0005515|GO:0006511
PubMed:  31898225|11178263
SCOP:  4001927

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
F-box_AtFBL13-like cd22160
F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) ...
 47-82 1.62e-09

F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) and similar proteins; AtARP13 and AtARP25 belong to the largest subfamily of plant F-box proteins, F-box/LRR-repeat protein (FBLs). It contains tandem leucine-rich repeats (LRRs). Like other F-box proteins, they may be components of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


:

Pssm-ID: 438931  Cd Length: 36  Bit Score: 53.06  E-value: 1.62e-09
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 571514958  47 ISQFPDHVIHHILSHLRnVNDAIRTSVLSKRWRELW 82
Cdd:cd22160    1 ISDLPDELLCHILSFLP-TKDAVKTSVLSKRWRHLW 35
 
Name Accession Description Interval E-value
F-box_AtFBL13-like cd22160
F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) ...
 47-82 1.62e-09

F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) and similar proteins; AtARP13 and AtARP25 belong to the largest subfamily of plant F-box proteins, F-box/LRR-repeat protein (FBLs). It contains tandem leucine-rich repeats (LRRs). Like other F-box proteins, they may be components of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438931  Cd Length: 36  Bit Score: 53.06  E-value: 1.62e-09
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 571514958  47 ISQFPDHVIHHILSHLRnVNDAIRTSVLSKRWRELW 82
Cdd:cd22160    1 ISDLPDELLCHILSFLP-TKDAVKTSVLSKRWRHLW 35
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 47-90 3.99e-04

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 38.29  E-value: 3.99e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 571514958   47 ISQFPDHVIHHILSHLrNVNDAIRTSVLSKRWRELWYSYSVLIF 90
Cdd:pfam00646   1 LLDLPDDLLLEILSRL-DPKDLLRLSLVSKRWRSLVDSLKLWKK 43
FBOX smart00256
A Receptor for Ubiquitination Targets;
50-82 9.97e-03

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 34.33  E-value: 9.97e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 571514958    50 FPDHVIHHILSHLrNVNDAIRTSVLSKRWRELW 82
Cdd:smart00256   1 LPDEILEEILSKL-DPKDLLRLRKVSRKWRSLI 32
 
Name Accession Description Interval E-value
F-box_AtFBL13-like cd22160
F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) ...
 47-82 1.62e-09

F-box domain found in Arabidopsis thaliana F-box/LRR-repeat protein 13 (AtARP13), 25 (AtARP25) and similar proteins; AtARP13 and AtARP25 belong to the largest subfamily of plant F-box proteins, F-box/LRR-repeat protein (FBLs). It contains tandem leucine-rich repeats (LRRs). Like other F-box proteins, they may be components of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438931  Cd Length: 36  Bit Score: 53.06  E-value: 1.62e-09
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 571514958  47 ISQFPDHVIHHILSHLRnVNDAIRTSVLSKRWRELW 82
Cdd:cd22160    1 ISDLPDELLCHILSFLP-TKDAVKTSVLSKRWRHLW 35
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 47-90 3.99e-04

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 38.29  E-value: 3.99e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 571514958   47 ISQFPDHVIHHILSHLrNVNDAIRTSVLSKRWRELWYSYSVLIF 90
Cdd:pfam00646   1 LLDLPDDLLLEILSRL-DPKDLLRLSLVSKRWRSLVDSLKLWKK 43
F-box_FBXL12 cd22123
F-box domain found in F-box/LRR-repeat protein 12 (FBXL12) and similar proteins; FBXL12, also ...
 47-83 4.54e-03

F-box domain found in F-box/LRR-repeat protein 12 (FBXL12) and similar proteins; FBXL12, also called F-box and leucine-rich repeat protein 12, or F-box protein FBL12, is the substrate-recognition component of an SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. It mediates the polyubiquitination and proteasomal degradation of calcium/calmodulin dependent protein kinase I (CAMK1) leading to disruption of cyclin D1/CDK4 complex assembly, which results in G1 cell cycle arrest in lung epithelia. It regulates T-cell differentiation in a cell-autonomous manner. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438895  Cd Length: 42  Bit Score: 35.02  E-value: 4.54e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 571514958  47 ISQFPDHVIHHILSHLrNVNDAIRTSVLSKRWRELWY 83
Cdd:cd22123    1 LDQLPENVLLEILSYL-PVRDLLRISRVCKRWRRLVY 36
FBOX smart00256
A Receptor for Ubiquitination Targets;
50-82 9.97e-03

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 34.33  E-value: 9.97e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 571514958    50 FPDHVIHHILSHLrNVNDAIRTSVLSKRWRELW 82
Cdd:smart00256   1 LPDEILEEILSKL-DPKDLLRLRKVSRKWRSLI 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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