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Conserved domains on  [gi|571509728|ref|XP_003544655|]
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auxin-responsive protein SAUR50 [Glycine max]

Protein Classification

SAUR-like auxin-responsive family protein( domain architecture ID 10494974)

SAUR-like auxin-responsive family protein similar to Arabidopsis thaliana SAUR proteins that may provide a mechanistic link between auxin and plasma membrane H+-ATPases (PM H+-ATPases)

Gene Ontology:  GO:0009733

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Auxin_inducible pfam02519
Auxin responsive protein; This family consists of the protein products of the ARG7 auxin ...
 51-133 4.31e-31

Auxin responsive protein; This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role.


:

Pssm-ID: 460580  Cd Length: 92  Bit Score: 108.11  E-value: 4.31e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571509728   51 KSMKYLKRTLSLSEREGGSSNVVPKGYLAVCVGEELKRFTIPTEYLGHQAFQILLREAEEEFGFQQTGVLRIPCEVAVFE 130
Cdd:pfam02519   9 QKRAALGRKRISSPRTTSSSDVPEKGHFVVYVGDERRRFVVPLEYLNHPLFRELLRMSEEEFGFPSDGPITLPCDVVVFE 88


                  ...
gi 571509728  131 SIL 133
Cdd:pfam02519  89 YLL 91
 
Name Accession Description Interval E-value
Auxin_inducible pfam02519
Auxin responsive protein; This family consists of the protein products of the ARG7 auxin ...
 51-133 4.31e-31

Auxin responsive protein; This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role.


Pssm-ID: 460580  Cd Length: 92  Bit Score: 108.11  E-value: 4.31e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571509728   51 KSMKYLKRTLSLSEREGGSSNVVPKGYLAVCVGEELKRFTIPTEYLGHQAFQILLREAEEEFGFQQTGVLRIPCEVAVFE 130
Cdd:pfam02519   9 QKRAALGRKRISSPRTTSSSDVPEKGHFVVYVGDERRRFVVPLEYLNHPLFRELLRMSEEEFGFPSDGPITLPCDVVVFE 88


                  ...
gi 571509728  131 SIL 133
Cdd:pfam02519  89 YLL 91
PLN03090 PLN03090
auxin-responsive family protein; Provisional
 4-136 2.82e-19

auxin-responsive family protein; Provisional


Pssm-ID: 178639  Cd Length: 104  Bit Score: 78.27  E-value: 2.82e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571509728   4 MDLKKSNKIREIVRLQQILKKWRKLAnsskttmvtttatatvtssasKSMKYlkrtlslseREGGSSNVVPKGYLAVCVG 83
Cdd:PLN03090   1 MAIKKSNKLTQTAMLKQILKRCSSLG---------------------KKQGY---------DEDGLPLDVPKGHFPVYVG 50

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 571509728  84 EELKRFTIPTEYLGHQAFQILLREAEEEFGFQQTGVLRIPCEVAVFESILKMV 136
Cdd:PLN03090  51 ENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103
rim_protein TIGR01257
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...
 73-137 1.77e-03

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]


Pssm-ID: 130324 [Multi-domain]  Cd Length: 2272  Bit Score: 38.46  E-value: 1.77e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 571509728    73 VPKGYLAVCVGEELKrFTIPTEYLGHQAFQILLREAEE---EFGFQQTGVLRIPCEvavfESILKMVE 137
Cdd:TIGR01257 1216 VPEAKLVECIGQELI-FLLPNKNFKQRAYASLFRELEEtlaDLGLSSFGISDTPLE----EIFLKVTE 1278
 
Name Accession Description Interval E-value
Auxin_inducible pfam02519
Auxin responsive protein; This family consists of the protein products of the ARG7 auxin ...
 51-133 4.31e-31

Auxin responsive protein; This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role.


Pssm-ID: 460580  Cd Length: 92  Bit Score: 108.11  E-value: 4.31e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571509728   51 KSMKYLKRTLSLSEREGGSSNVVPKGYLAVCVGEELKRFTIPTEYLGHQAFQILLREAEEEFGFQQTGVLRIPCEVAVFE 130
Cdd:pfam02519   9 QKRAALGRKRISSPRTTSSSDVPEKGHFVVYVGDERRRFVVPLEYLNHPLFRELLRMSEEEFGFPSDGPITLPCDVVVFE 88


                  ...
gi 571509728  131 SIL 133
Cdd:pfam02519  89 YLL 91
PLN03090 PLN03090
auxin-responsive family protein; Provisional
 4-136 2.82e-19

auxin-responsive family protein; Provisional


Pssm-ID: 178639  Cd Length: 104  Bit Score: 78.27  E-value: 2.82e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571509728   4 MDLKKSNKIREIVRLQQILKKWRKLAnsskttmvtttatatvtssasKSMKYlkrtlslseREGGSSNVVPKGYLAVCVG 83
Cdd:PLN03090   1 MAIKKSNKLTQTAMLKQILKRCSSLG---------------------KKQGY---------DEDGLPLDVPKGHFPVYVG 50

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 571509728  84 EELKRFTIPTEYLGHQAFQILLREAEEEFGFQQTGVLRIPCEVAVFESILKMV 136
Cdd:PLN03090  51 ENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103
PLN03220 PLN03220
uncharacterized protein; Provisional
 52-129 1.08e-12

uncharacterized protein; Provisional


Pssm-ID: 178759  Cd Length: 105  Bit Score: 61.30  E-value: 1.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571509728  52 SMKYLKRTLSLSER---EGGSSNVVPKGYLAVCVGEEL----KRFTIPTEYLGHQAFQILLREAEEEFGFQQ-TGVLRIP 123
Cdd:PLN03220  11 ATKQILKLNSLANRnrtSSSSSDHVPKGHVAVYVGEQIemekKRFVVPISFLNHPSFKEFLSRAEEEFGFNHpMGGLTIP 90


                 ....*.
gi 571509728 124 CEVAVF 129
Cdd:PLN03220  91 CREEVF 96
PLN03219 PLN03219
uncharacterized protein; Provisional
 69-129 1.39e-11

uncharacterized protein; Provisional


Pssm-ID: 178758 [Multi-domain]  Cd Length: 108  Bit Score: 58.22  E-value: 1.39e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 571509728  69 SSNVVPKGYLAVCVGEEL--KRFTIPTEYLGHQAFQILLREAEEEFGFQQT-GVLRIPCEVAVF 129
Cdd:PLN03219  35 TSGLVPKGHVAVYVGEQMekKRFVVPISYLNHPLFREFLNRAEEECGFHHSmGGLTIPCREESF 98
rim_protein TIGR01257
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ...
 73-137 1.77e-03

retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]


Pssm-ID: 130324 [Multi-domain]  Cd Length: 2272  Bit Score: 38.46  E-value: 1.77e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 571509728    73 VPKGYLAVCVGEELKrFTIPTEYLGHQAFQILLREAEE---EFGFQQTGVLRIPCEvavfESILKMVE 137
Cdd:TIGR01257 1216 VPEAKLVECIGQELI-FLLPNKNFKQRAYASLFRELEEtlaDLGLSSFGISDTPLE----EIFLKVTE 1278
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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