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Conserved domains on  [gi|571495414|ref|XP_006593201|]
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uncharacterized protein LOC102665828 [Glycine max]

Protein Classification

zinc-binding domain-containing protein( domain architecture ID 10623303)

zinc-binding domain-containing protein may be associated with an long terminal repeat (LTR) retrotransposon

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-RVT pfam13966
zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of ...
 102-183 6.25e-18

zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of a putative reverse transcriptase.


:

Pssm-ID: 433612  Cd Length: 84  Bit Score: 76.54  E-value: 6.25e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571495414  102 YTTKSAYNLLITLSSPALDRRtsqLLWNMKIPPKHAVFTWKLLSGRLPTRANLSRRRVNIqDTACPLCGDVQEEVGHLFF 181
Cdd:pfam13966   1 FSVKSAYNLLRQKRPKVDWAK---LIWKKKAPPKVKFFLWLALRNRLPTADRLKKRGIPI-DSRCPLCGQEEETIDHLFF 76


                  ..
gi 571495414  182 NC 183
Cdd:pfam13966  77 SC 78
 
Name Accession Description Interval E-value
zf-RVT pfam13966
zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of ...
 102-183 6.25e-18

zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of a putative reverse transcriptase.


Pssm-ID: 433612  Cd Length: 84  Bit Score: 76.54  E-value: 6.25e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571495414  102 YTTKSAYNLLITLSSPALDRRtsqLLWNMKIPPKHAVFTWKLLSGRLPTRANLSRRRVNIqDTACPLCGDVQEEVGHLFF 181
Cdd:pfam13966   1 FSVKSAYNLLRQKRPKVDWAK---LIWKKKAPPKVKFFLWLALRNRLPTADRLKKRGIPI-DSRCPLCGQEEETIDHLFF 76


                  ..
gi 571495414  182 NC 183
Cdd:pfam13966  77 SC 78
 
Name Accession Description Interval E-value
zf-RVT pfam13966
zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of ...
 102-183 6.25e-18

zinc-binding in reverse transcriptase; This domain would appear to be a zinc-binding region of a putative reverse transcriptase.


Pssm-ID: 433612  Cd Length: 84  Bit Score: 76.54  E-value: 6.25e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571495414  102 YTTKSAYNLLITLSSPALDRRtsqLLWNMKIPPKHAVFTWKLLSGRLPTRANLSRRRVNIqDTACPLCGDVQEEVGHLFF 181
Cdd:pfam13966   1 FSVKSAYNLLRQKRPKVDWAK---LIWKKKAPPKVKFFLWLALRNRLPTADRLKKRGIPI-DSRCPLCGQEEETIDHLFF 76


                  ..
gi 571495414  182 NC 183
Cdd:pfam13966  77 SC 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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