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Conserved domains on  [gi|571471681|ref|XP_006585378|]
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uncharacterized protein LOC100785001 isoform X7 [Glycine max]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SOK super family cl05585
Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein ...
 14-100 4.47e-29

Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein SOSEKI1-5 from Arabidopsis thaliana and Physcomitrium patens. SOK1-5 integrate apical-basal and radial organizmal axes to localize to polar cell edges and contain a DIX oligomerization domain that resembles that in the animal Dishevelled polarity regulator.


The actual alignment was detected with superfamily member pfam06136:

Pssm-ID: 461836  Cd Length: 366  Bit Score: 116.79  E-value: 4.47e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571471681   14 IIYFLSQiGGRADHPHLIRVLHLARNGVYLRDVKRWLGELRGKDLPDAFSWSYKRRYKSGYVWQDLLDDDLITPISDNEY 93
Cdd:pfam06136   3 VVYYLCR-NGQLEHPHFMEVPLSSPDGLYLRDVIDRLNVLRGKGMASMYSWSCKRSYKNGFVWHDLSEDDLILPAHGNEY 81


                  ....*..
gi 571471681   94 VLKGSQI 100
Cdd:pfam06136  82 VLKGSEL 88
 
Name Accession Description Interval E-value
SOK pfam06136
Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein ...
 14-100 4.47e-29

Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein SOSEKI1-5 from Arabidopsis thaliana and Physcomitrium patens. SOK1-5 integrate apical-basal and radial organizmal axes to localize to polar cell edges and contain a DIX oligomerization domain that resembles that in the animal Dishevelled polarity regulator.


Pssm-ID: 461836  Cd Length: 366  Bit Score: 116.79  E-value: 4.47e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571471681   14 IIYFLSQiGGRADHPHLIRVLHLARNGVYLRDVKRWLGELRGKDLPDAFSWSYKRRYKSGYVWQDLLDDDLITPISDNEY 93
Cdd:pfam06136   3 VVYYLCR-NGQLEHPHFMEVPLSSPDGLYLRDVIDRLNVLRGKGMASMYSWSCKRSYKNGFVWHDLSEDDLILPAHGNEY 81


                  ....*..
gi 571471681   94 VLKGSQI 100
Cdd:pfam06136  82 VLKGSEL 88
 
Name Accession Description Interval E-value
SOK pfam06136
Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein ...
 14-100 4.47e-29

Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein SOSEKI1-5 from Arabidopsis thaliana and Physcomitrium patens. SOK1-5 integrate apical-basal and radial organizmal axes to localize to polar cell edges and contain a DIX oligomerization domain that resembles that in the animal Dishevelled polarity regulator.


Pssm-ID: 461836  Cd Length: 366  Bit Score: 116.79  E-value: 4.47e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571471681   14 IIYFLSQiGGRADHPHLIRVLHLARNGVYLRDVKRWLGELRGKDLPDAFSWSYKRRYKSGYVWQDLLDDDLITPISDNEY 93
Cdd:pfam06136   3 VVYYLCR-NGQLEHPHFMEVPLSSPDGLYLRDVIDRLNVLRGKGMASMYSWSCKRSYKNGFVWHDLSEDDLILPAHGNEY 81


                  ....*..
gi 571471681   94 VLKGSQI 100
Cdd:pfam06136  82 VLKGSEL 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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