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Conserved domains on  [gi|571458840|ref|XP_003528272|]
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photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Glycine max]

Protein Classification

chlorophyll a-b binding domain-containing protein( domain architecture ID 10010656)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 22-283 4.12e-168

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


:

Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 465.51  E-value: 4.12e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  22 TMAVAIGRSFSIQPGSlfnnksldRGSPAGRLSwlgDGAAATPRYRQTcVGAQQRPTWLPGLDPPPHLDGTLAGDFGFDP 101
Cdd:PLN00147   3 SMAGGTTGGFLHQPRD--------SSSHCTRSI---SSVAASSGGINP-VVAQERPTWLPGLDPPPHLDGTLAGDFGFDP 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 102 LGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKIPVWFEAGAVKYDFANTKTLFLVQLVLMGFVETKRY 181
Cdd:PLN00147  71 LGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAETKRY 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 182 MDFVSPGSQAKEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 261
Cdd:PLN00147 151 MDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230

                        250       260
                 ....*....|....*....|..
gi 571458840 262 DNLVEHLSNPWHKTIIQTLANS 283
Cdd:PLN00147 231 DNLLTHLSDPWHKTIIQTLSHS 252
 
Name Accession Description Interval E-value
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 22-283 4.12e-168

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 465.51  E-value: 4.12e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  22 TMAVAIGRSFSIQPGSlfnnksldRGSPAGRLSwlgDGAAATPRYRQTcVGAQQRPTWLPGLDPPPHLDGTLAGDFGFDP 101
Cdd:PLN00147   3 SMAGGTTGGFLHQPRD--------SSSHCTRSI---SSVAASSGGINP-VVAQERPTWLPGLDPPPHLDGTLAGDFGFDP 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 102 LGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKIPVWFEAGAVKYDFANTKTLFLVQLVLMGFVETKRY 181
Cdd:PLN00147  71 LGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAETKRY 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 182 MDFVSPGSQAKEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 261
Cdd:PLN00147 151 MDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230

                        250       260
                 ....*....|....*....|..
gi 571458840 262 DNLVEHLSNPWHKTIIQTLANS 283
Cdd:PLN00147 231 DNLLTHLSDPWHKTIIQTLSHS 252
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
85-253 1.49e-62

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 194.45  E-value: 1.49e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840   85 PPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKIPVWFEAGAVKYDFANTKT 164
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEAGAVALHAQSVPT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  165 LF-LVQLVLMGFVETKRYMDFVSPGsqakegsffgleaSLKGLEPGYPGGPLLNPLGLA-KDINNAHDWKLKEIKNGRLA 242
Cdd:pfam00504  81 LLaLQILLLMGFLELARWQGGKAPG-------------LGGGGDRGYPGGFGFDPLGLAkKDPETLAELKLKELKNGRLA 147

                         170
                  ....*....|.
gi 571458840  243 MVAMLGIFVQA 253
Cdd:pfam00504 148 MIAFLGFFVQE 158
 
Name Accession Description Interval E-value
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 22-283 4.12e-168

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 465.51  E-value: 4.12e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  22 TMAVAIGRSFSIQPGSlfnnksldRGSPAGRLSwlgDGAAATPRYRQTcVGAQQRPTWLPGLDPPPHLDGTLAGDFGFDP 101
Cdd:PLN00147   3 SMAGGTTGGFLHQPRD--------SSSHCTRSI---SSVAASSGGINP-VVAQERPTWLPGLDPPPHLDGTLAGDFGFDP 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 102 LGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKIPVWFEAGAVKYDFANTKTLFLVQLVLMGFVETKRY 181
Cdd:PLN00147  71 LGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAETKRY 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 182 MDFVSPGSQAKEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 261
Cdd:PLN00147 151 MDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230

                        250       260
                 ....*....|....*....|..
gi 571458840 262 DNLVEHLSNPWHKTIIQTLANS 283
Cdd:PLN00147 231 DNLLTHLSDPWHKTIIQTLSHS 252
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 79-281 9.25e-72

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 221.33  E-value: 9.25e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  79 WLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKIPVWFEAGAVKYd 158
Cdd:PLN00101  56 WLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY- 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 159 FANTKTLFLVQLVLMGFVETKRYMDFVSPGSQAKEGSFFGLeaSLKGLEPGYPGGpLLNPLGLAKDInnahDWKLKEIKN 238
Cdd:PLN00101 135 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY--SLPPNEVGYPGG-IFNPLNFAPTE----EAKEKELAN 207

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 571458840 239 GRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLA 281
Cdd:PLN00101 208 GRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 73-276 7.91e-69

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 213.33  E-value: 7.91e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  73 AQQRPTWLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKIPVWFEA 152
Cdd:PLN00097  41 AADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDA 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 153 GAVKYDFANTKTLFLVQLVLMGFVETKRYMDFVSPGSqAKEGSFFGLEASLKGLEPGYPGGpLLNPLGLAKDINNAHDWK 232
Cdd:PLN00097 121 AKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGS-MNEDPLFGANKGDTNTDVGYPKG-LFDKFGWAKDEKKAAELK 198

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 571458840 233 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTI 276
Cdd:PLN00097 199 LKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGI 242
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 60-280 8.44e-63

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 198.54  E-value: 8.44e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  60 AAATPRYRQtcvgAQQRPTWLPGLDPPPHLDGTLAGDFGFDPLGLAeDPASL------RWYVQAELVHCRFAMLGVFGIL 133
Cdd:PLN00048  30 AEATPPAKQ----GADRQLWFASKQSLSYLDGTLPGDFGFDPLGLS-DPEGAggfiepQWLAYGEVINGRFAMLGAAGAI 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 134 VTDLLRVTGIskIP-----VWFEAGAVK----YDF-ANTKTLFLVQLVLMGFVETKRYMDFVSPGSQAKEgSFFGLEASL 203
Cdd:PLN00048 105 APEILGKAGL--IPqetalPWFQSGVIPpagtYDYwADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQ-YFLGLEKGL 181

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 571458840 204 KGL-EPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTL 280
Cdd:PLN00048 182 GGSgNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNL 259
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
85-253 1.49e-62

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 194.45  E-value: 1.49e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840   85 PPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKIPVWFEAGAVKYDFANTKT 164
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEAGAVALHAQSVPT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  165 LF-LVQLVLMGFVETKRYMDFVSPGsqakegsffgleaSLKGLEPGYPGGPLLNPLGLA-KDINNAHDWKLKEIKNGRLA 242
Cdd:pfam00504  81 LLaLQILLLMGFLELARWQGGKAPG-------------LGGGGDRGYPGGFGFDPLGLAkKDPETLAELKLKELKNGRLA 147

                         170
                  ....*....|.
gi 571458840  243 MVAMLGIFVQA 253
Cdd:pfam00504 148 MIAFLGFFVQE 158
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 76-273 4.51e-58

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 186.66  E-value: 4.51e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  76 RPTWLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKIPVWFEAGAV 155
Cdd:PLN00098  62 RPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAR 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 156 KYdFANTKTLFLVQLVLMGFVETKRYMDFVSPGSQAKEGSFfgleASLKGLEP--GYPGGPLLNPLGLAK-DINNAHDWK 232
Cdd:PLN00098 142 EY-FADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKL----PNKTNPKPdvGYPGGLWFDPMMWGRgSPEPVMVLR 216

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 571458840 233 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWH 273
Cdd:PLN00098 217 TKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGH 257
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 60-276 8.05e-53

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 172.75  E-value: 8.05e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  60 AAATPRYRQTCVGAQQRPTWLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLr 139
Cdd:PLN00100  19 GVSTTRRPRVRVAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAV- 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 140 vtgisKIPVWFEAGAVKYDFaNTKTLFLVQLVLMGFVETKRYMDFVSPGsqakegsffgleaslkglEPGYPGGPLLNPL 219
Cdd:PLN00100  98 -----GLPKFWEAGAEKYGL-DLQTLVLIQVVVMAVLEAARYRGFMKTG------------------ESGVLSFFPFDPT 153

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 571458840 220 GLakdinNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTI 276
Cdd:PLN00100 154 GM-----DSPEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNI 205
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 74-280 3.29e-48

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 163.05  E-value: 3.29e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  74 QQRPTWLPGL--DPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISKI--PVW 149
Cdd:PLN00171 106 EERPRWLGPIpyDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFaePVW 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 150 FEAGAVK-------------YDFANTKTLFLV---QLVLMGFVETKRYMdfvspgsqakegsffGLEAslkgLEP----- 208
Cdd:PLN00171 186 WRVGYAKlqgdtldylgipgLHIAGSQGVIVIaicQALLMVGPEYARYC---------------GIEA----LEPlgiyl 246

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 571458840 209 ----GYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTL 280
Cdd:PLN00171 247 pgdiNYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 70-276 3.45e-48

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 160.58  E-value: 3.45e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  70 CVGAQQRPT----WLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISK 145
Cdd:PLN00099  34 NANGSSRVTmsadWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVK 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 146 IPVW--FEAGAVKY-----DFANTKTLFLVQLVLMGFVETKRYMDfvsPGSQAKEgsffgleaslkglepgYPGGPlLNP 218
Cdd:PLN00099 114 AQEWaaIPGGQATYlgnpvPWGTLPTILAIEFLAIAFVEHQRSME---KDPEKKK----------------YPGGA-FDP 173

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 571458840 219 LGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNLVEHLSNPWHKTI 276
Cdd:PLN00099 174 LGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAyPGTGPLENLATHLADPWHNNI 232
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 76-271 9.68e-46

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 154.90  E-value: 9.68e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  76 RPTWLPGL--DPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGIS-KIPVWFEA 152
Cdd:PLN00025  51 RPKYLGPFsgETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKfGEAVWFKA 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 153 GAVKY-----DFANTKTL---------FLVQLVLMGFVETKRYmdfvsPGSQAKEGsffgleaslkgLEPGYPGGPLlNP 218
Cdd:PLN00025 131 GAQIFsegglDYLGNPSLvhaqsilaiWACQVVLMGAVEGYRV-----NGGPLGEG-----------LDPLYPGGSF-DP 193

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 571458840 219 LGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNP 271
Cdd:PLN00025 194 LGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 246
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 42-253 1.29e-44

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 151.62  E-value: 1.29e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  42 KSLDRGSPAGRLSWLGDGAAATPRYRQTCVGAQQRP--TWLPG------LDPPPHLDGTLAGDFGFDPLGLAEDPASLRW 113
Cdd:PLN00170  15 SSFLTGGKRSLALLVGTGAAKVGARTLLVVAAAAQPkkSWIPAvkgggnLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 114 YVQAELVHCRFAMLGVFGILVTDllrvtGISKIPvWFEAGAVKYDFA--NTKTLFLVQLVLMGFVETKRYMDFVSPGSQA 191
Cdd:PLN00170  95 YREAELIHGRWAMAAVVGIFVGQ-----AWSGIP-WFEAGADPGAIApfSFGSLLGTQLLLMGWVESKRWVDFFNPDSQS 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 192 KEGS---------FfgleASLKGLEpGYPGGPLLNPLGLA---------KDINNAHDWKLKEIKNGRLAMVAMLGIFVQA 253
Cdd:PLN00170 169 VEWAtpwsrtaenF----ANATGLQ-GYPGGKFFDPLGLAgtvkdgvyiPDFEKLERLKLAEIKHARLAMVAMLIFYFEA 243
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 52-282 2.72e-38

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 136.07  E-value: 2.72e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  52 RLSWLGDGAAATPRYRQTCVGAQQRPTWLPGLDPPPHLDGTLAGDFGFDPLGL--------------------------- 104
Cdd:PLN00187  28 RFGFGKKKKAAKKAKKKSSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLgkpaeylqfdldsldqnlaknlagdvi 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 105 -----AEDPAS-----------LRWYVQAELVHCRFAMLGVFGILVTDLLrvTGISkipvWFEAGAVKYD---------- 158
Cdd:PLN00187 108 gtrteASEIKStpfqpysevfgLQRFRECELIHGRWAMLATLGALSVEAL--TGVT----WQDAGKVELVdgssylgqpl 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 159 -FANTkTLFLVQLVLMGFVETKRymdfvspgsqakegsffglEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIK 237
Cdd:PLN00187 182 pFSIT-TLIWIEVLVIGYIEFQR-------------------NAELDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIK 241

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 571458840 238 NGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLAN 282
Cdd:PLN00187 242 HARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 95-259 2.49e-14

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 70.10  E-value: 2.49e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840  95 GDFGFDPLGLAED-PASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTG----ISKIPVWFEAgavkYDfANTKTLFLVQ 169
Cdd:PLN00089  55 GSKKFDPLGLAEKvEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGeaysFAAIPKTIDA----HD-ALLKSGAMIQ 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571458840 170 LVL-MGFVETKRymdfvspgsqakegSFFGLEASLKGLEpgYPGGPLLNPLGLA-KDINNAHDWKLKEIKNGRLAMVAML 247
Cdd:PLN00089 130 IFAwIGFVDLAV--------------SAPAAAAAAEFDR--TPGDFGFDLLALYpKDAAKMEKKKDKELKNGRLAMVAIG 193

                        170
                 ....*....|..
gi 571458840 248 GIFVQASVTHVG 259
Cdd:PLN00089 194 GIATGSAITGHG 205
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
78-137 1.37e-08

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 53.08  E-value: 1.37e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 571458840   78 TWLPGLDPPPhlDGTLAGDFGFDPLGLA-EDPASLRWYVQAELVHCRFAMLGVFGILVTDL 137
Cdd:pfam00504 101 GKAPGLGGGG--DRGYPGGFGFDPLGLAkKDPETLAELKLKELKNGRLAMIAFLGFFVQEL 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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